RNA–Protein interactions for RNA: Q0140

VAR1, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene VAR1, Length 1,197 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VAR1	Q0140	YHR173C	P38864	112 aa		-2.47	□□□□□ -2.8
VAR1	Q0140	PHB1	P40961	287 aa		-2.47	□□□□□ -2.8
VAR1	Q0140	RPL30	P14120	105 aa	Known RBP	-2.48	□□□□□ -2.81
VAR1	Q0140	YPD1	Q07688	167 aa		-2.48	□□□□□ -2.81
VAR1	Q0140	ATP14	Q12349	124 aa		-2.48	□□□□□ -2.81
VAR1	Q0140	UBI4	P0CG63	381 aa	Known RBP	-2.49	□□□□□ -2.81
VAR1	Q0140	YLR296W	Q05898	108 aa		-2.49	□□□□□ -2.81
VAR1	Q0140	LDB18	Q07887	179 aa		-2.5	□□□□□ -2.81
VAR1	Q0140	RPA12	P32529	125 aa	Known RBP	-2.51	□□□□□ -2.81
VAR1	Q0140	YBR072C-A	Q3E794	53 aa		-2.51	□□□□□ -2.81
VAR1	Q0140	ATP7	P30902	174 aa		-2.52	□□□□□ -2.81
VAR1	Q0140	YER181C	P40097	107 aa		-2.52	□□□□□ -2.81
VAR1	Q0140	YJL218W	P40892	196 aa	Known RBP	-2.52	□□□□□ -2.81
VAR1	Q0140	SOM1	Q05676	74 aa		-2.52	□□□□□ -2.81
VAR1	Q0140	SNT2	P53127	1403 aa		-2.52	□□□□□ -2.81
VAR1	Q0140	TIM11	P81449	96 aa	Predicted RBP	-2.54	□□□□□ -2.82
VAR1	Q0140	SUA7	P29055	345 aa	Predicted RBP	-2.55	□□□□□ -2.82
VAR1	Q0140	YIP3	P53633	176 aa		-2.56	□□□□□ -2.82
VAR1	Q0140	ATX1	P38636	73 aa		-2.57	□□□□□ -2.82
VAR1	Q0140	YGL149W	P53116	101 aa		-2.57	□□□□□ -2.82
VAR1	Q0140	GTT2	Q12390	233 aa		-2.57	□□□□□ -2.82
VAR1	Q0140	TY4B-H	P0C2J7	1802 aa		-2.58	□□□□□ -2.82
VAR1	Q0140	BRP1	P53194	125 aa		-2.58	□□□□□ -2.82
VAR1	Q0140	RAF1	Q06891	181 aa		-2.58	□□□□□ -2.82
VAR1	Q0140	HHO1	P53551	258 aa		-2.59	□□□□□ -2.82
VAR1	Q0140	RTC6	O14464	93 aa		-2.6	□□□□□ -2.83
VAR1	Q0140	FIG1	P38224	298 aa		-2.6	□□□□□ -2.83
VAR1	Q0140	YIL163C	P40448	117 aa		-2.6	□□□□□ -2.83
VAR1	Q0140	EGD2	P38879	174 aa	Known RBP	-2.61	□□□□□ -2.83
VAR1	Q0140	APQ12	P40532	138 aa		-2.61	□□□□□ -2.83
VAR1	Q0140	FCF2	Q12035	217 aa	Predicted RBP	-2.61	□□□□□ -2.83
VAR1	Q0140	OCA6	Q12454	224 aa		-2.61	□□□□□ -2.83
VAR1	Q0140	DDP1	Q99321	188 aa	Known RBP	-2.61	□□□□□ -2.83
VAR1	Q0140	GSP1	P32835	219 aa	Known RBP	-2.62	□□□□□ -2.83
VAR1	Q0140	AIM18	P38884	321 aa		-2.62	□□□□□ -2.83
VAR1	Q0140	SEC72	P39742	193 aa	Known RBP	-2.62	□□□□□ -2.83
VAR1	Q0140	YGR240C-A	Q3E786	66 aa		-2.62	□□□□□ -2.83
VAR1	Q0140	ENV10	Q99382	181 aa		-2.62	□□□□□ -2.83
VAR1	Q0140	YDR476C	Q03362	224 aa		-2.65	□□□□□ -2.83
VAR1	Q0140	CWC21	Q03375	135 aa	Known RBP	-2.65	□□□□□ -2.83
VAR1	Q0140	ICS3	P47034	131 aa		-2.66	□□□□□ -2.84
VAR1	Q0140	HSP12	P22943	109 aa	Known RBP	-2.67	□□□□□ -2.84
VAR1	Q0140	YOR385W	Q08909	290 aa		-2.67	□□□□□ -2.84
VAR1	Q0140	YPR202W	Q08993	238 aa		-2.67	□□□□□ -2.84
VAR1	Q0140	HAP3	P13434	144 aa		-2.68	□□□□□ -2.84
VAR1	Q0140	MRPL44	P19956	98 aa		-2.68	□□□□□ -2.84
VAR1	Q0140	MRPS12	P53732	153 aa		-2.7	□□□□□ -2.84
VAR1	Q0140	EFM5	P53200	248 aa	Known RBP	-2.71	□□□□□ -2.84
VAR1	Q0140	YGR017W	P53210	297 aa		-2.71	□□□□□ -2.84
VAR1	Q0140	MAK3	Q03503	176 aa		-2.71	□□□□□ -2.84
VAR1	Q0140	EFG1	Q3E705	233 aa	Known RBP	-2.71	□□□□□ -2.84
VAR1	Q0140	HPA2	Q06592	156 aa		-2.72	□□□□□ -2.84
VAR1	Q0140	CCW14	O13547	238 aa		-2.73	□□□□□ -2.85
VAR1	Q0140	SEC7	P11075	2009 aa	Known RBP	-2.74	□□□□□ -2.85
VAR1	Q0140	LSM1	P47017	172 aa	Known RBP	-2.74	□□□□□ -2.85
VAR1	Q0140	YLR053C	Q12026	108 aa		-2.74	□□□□□ -2.85
VAR1	Q0140	LSM8	P47093	109 aa	Known RBP	-2.75	□□□□□ -2.85
VAR1	Q0140	RPS1A	P33442	255 aa	Known RBP	-2.76	□□□□□ -2.85
VAR1	Q0140	YGR201C	P42936	225 aa		-2.77	□□□□□ -2.85
VAR1	Q0140	PET20	Q99373	253 aa		-2.77	□□□□□ -2.85
VAR1	Q0140	SGF11	Q03067	99 aa		-2.78	□□□□□ -2.85
VAR1	Q0140	PBI2	P0CT04	75 aa	Known RBP	-2.79	□□□□□ -2.86
VAR1	Q0140	URB1	P34241	1764 aa	Known RBP	-2.79	□□□□□ -2.86
VAR1	Q0140	YGL041C-B	Q3E750	60 aa		-2.8	□□□□□ -2.86
VAR1	Q0140	QCR10	P37299	77 aa		-2.83	□□□□□ -2.86
VAR1	Q0140	HSP10	P38910	106 aa		-2.83	□□□□□ -2.86
VAR1	Q0140	RPL36B	O14455	100 aa	Known RBP	-2.84	□□□□□ -2.86
VAR1	Q0140	RPL36A	P05745	100 aa	Predicted RBP	-2.84	□□□□□ -2.86
VAR1	Q0140	RPL35A	P0CX84	120 aa	Known RBP	-2.84	□□□□□ -2.86
VAR1	Q0140	RPL35B	P0CX85	120 aa	Known RBP	-2.84	□□□□□ -2.86
VAR1	Q0140	RAV2	Q03956	351 aa		-2.84	□□□□□ -2.86
VAR1	Q0140	PAU21	P0CE86	164 aa		-2.85	□□□□□ -2.87
VAR1	Q0140	PAU22	P0CE87	164 aa		-2.85	□□□□□ -2.87
VAR1	Q0140	PRS3	P38689	320 aa	Known RBP	-2.85	□□□□□ -2.87
VAR1	Q0140	SDH7	Q04401	133 aa		-2.86	□□□□□ -2.87
VAR1	Q0140	YRF1-6	P53819	1859 aa		-2.87	□□□□□ -2.87
VAR1	Q0140	RPL22A	P05749	121 aa	Known RBP	-2.87	□□□□□ -2.87
VAR1	Q0140	SPG1	P50088	95 aa		-2.88	□□□□□ -2.87
VAR1	Q0140	PHS1	P40857	217 aa		-2.89	□□□□□ -2.87
VAR1	Q0140	YAP3	P38749	330 aa		-2.91	□□□□□ -2.88
VAR1	Q0140	GCV3	P39726	170 aa	Predicted RBP	-2.92	□□□□□ -2.88
VAR1	Q0140	ECM5	Q03214	1411 aa		-2.94	□□□□□ -2.88
VAR1	Q0140	SUI1	P32911	108 aa	Known RBP	-2.96	□□□□□ -2.88
VAR1	Q0140	NSL1	Q12143	216 aa		-2.96	□□□□□ -2.88
VAR1	Q0140	GIM3	P53900	129 aa		-2.97	□□□□□ -2.88
VAR1	Q0140	RUB1	Q03919	77 aa		-2.99	□□□□□ -2.89
VAR1	Q0140	RPO41	P13433	1351 aa	Known RBP	-3	□□□□□ -2.89
VAR1	Q0140	RSF2	P46974	1380 aa		-3	□□□□□ -2.89
VAR1	Q0140	UTP20	P35194	2493 aa	Known RBP	-3.01	□□□□□ -2.89
VAR1	Q0140	ADK1	P07170	222 aa	Known RBP	-3.03	□□□□□ -2.89
VAR1	Q0140	RIM15	P43565	1770 aa		-3.03	□□□□□ -2.89
VAR1	Q0140	YFR009W-A	P0C5M9	85 aa		-3.04	□□□□□ -2.9
VAR1	Q0140	VPS51	P36116	164 aa		-3.04	□□□□□ -2.9
VAR1	Q0140	YAL064W	P39711	94 aa		-3.04	□□□□□ -2.9
VAR1	Q0140	YPK9	Q12697	1472 aa		-3.04	□□□□□ -2.9
VAR1	Q0140	RPS28B	P0C0X0	67 aa	Known RBP	-3.05	□□□□□ -2.9
VAR1	Q0140	YBR016W	P38216	128 aa		-3.05	□□□□□ -2.9
VAR1	Q0140	HPM1	P40481	377 aa		-3.05	□□□□□ -2.9
VAR1	Q0140	RPS28A	Q3E7X9	67 aa	Predicted RBP	-3.05	□□□□□ -2.9
VAR1	Q0140	YLR285C-A	Q3E771	56 aa		-3.07	□□□□□ -2.9

Retrieved 100 of 5,963 RNA–protein pairs in 43.5 ms