RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 MCM7P33993 719 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 ACVRL1P37023 503 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 U2AF1Q01081 240 aaKnown RBP eCLIP4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 OCA2Q04671 838 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 SLFN5Q08AF3 891 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 RESTQ13127 1097 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 RRS1Q15050 365 aaKnown RBP4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 TIGD2Q4W5G0 525 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 CCDC93Q567U6 631 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 CCDC157Q569K6 752 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 HSP90AB2PQ58FF8 381 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 NXNQ6DKJ4 435 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 ZNF365Q70YC5 407 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 PTF1AQ7RTS3 328 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 FAM90A1Q86YD7 464 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 SH2D3CQ8N5H7 860 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 CPEB3Q8NE35 698 aaKnown RBP4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 CDK5RAP3Q96JB5 506 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 FAM167AQ96KS9 214 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 PNKPQ96T60 521 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 CGRRF1Q99675 332 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 WDCPQ9H6R7 721 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 LMBRD1Q9NUN5 540 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 GNL3LQ9NVN8 582 aaKnown RBP4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 PNPOQ9NVS9 261 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 KLHL42Q9P2K6 505 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 POLKQ9UBT6 870 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 NR2E3Q9Y5X4 410 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 HS3ST4Q9Y661 456 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 SCN11AQ9UI33 1791 aa4.55□□□□□ -1.68
CKS1BP3-201ENST00000600888 C5P01031 1676 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 CENPVL1A0A0U1RR11 272 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 PRSS29PA6NIE9 313 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 H3BUI4 141 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 LPXNO60711 386 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 GPANK1O95872 356 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 FCER1AP12319 257 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 TYRP14679 529 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 FGFR4P22455 802 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 DDX6P26196 483 aaKnown RBP eCLIP4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 HMGB2P26583 209 aaKnown RBP4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 NKX6-1P78426 367 aaPredicted RBP4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 HSD11B2P80365 405 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 ABHD18Q0P651 414 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 TXNRD1Q16881 649 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 B3GNTL1Q67FW5 361 aaPredicted RBP4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 FOXR2Q6PJQ5 311 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 USP51Q70EK9 711 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 TCEAL8Q8IYN2 117 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 CAMKK1Q8N5S9 505 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 AOPEPQ8N6M6 819 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 MAGEB6Q8N7X4 407 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 KLHDC4Q8TBB5 520 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 RAPGEF4Q8WZA2 1011 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 LTV1Q96GA3 475 aaPredicted RBP4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 TAAR9Q96RI9 348 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 ACO2Q99798 780 aaKnown RBP4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 MLST8Q9BVC4 326 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 C1orf43Q9BWL3 253 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 MRPL46Q9H2W6 279 aaKnown RBP4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 BRD9Q9H8M2 597 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 PANK3Q9H999 370 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 HSFX1Q9UBD0 423 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 USP25Q9UHP3 1055 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 STXBP5LQ9Y2K9 1186 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 UBR3Q6ZT12 1888 aa4.54□□□□□ -1.68
CKS1BP3-201ENST00000600888 NPC1L1Q9UHC9 1359 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 KIF7Q2M1P5 1343 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 PCDH11XQ9BZA7 1347 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 PCDH11YQ9BZA8 1340 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 CHD4Q14839 1912 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 H3BML4 177 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 CTNND1O60716 968 aaKnown RBP4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 ABHD16AO95870 558 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 ANXA1P04083 346 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 GJB1P08034 283 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 GNAI3P08754 354 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 IL12RB1P42701 662 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 GDF5P43026 501 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 GNAI1P63096 354 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 MXRA7P84157 204 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 PLS1Q14651 629 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 MLC1Q15049 377 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 SLC15A2Q16348 729 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 SPDYE7PQ495Y7 208 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 MINDY4Q4G0A6 757 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 LY6G5CQ5SRR4 150 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 ARMC6Q6NXE6 501 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 PDSS2Q86YH6 399 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 DENND1CQ8IV53 801 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 ARHGEF19Q8IW93 802 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 MYO1HQ8N1T3 1032 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 FAM43AQ8N2R8 423 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 SLC17A8Q8NDX2 589 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 TMIEQ8NEW7 156 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 PROKR1Q8TCW9 393 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 LARP4BQ92615 738 aaKnown RBP4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 TSR2Q969E8 191 aaKnown RBP4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 SLC35A4Q96G79 324 aa4.53□□□□□ -1.68
CKS1BP3-201ENST00000600888 BOD1Q96IK1 185 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms