RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSL1	YLR005W	PHO92	Q06390	306 aa		2.78	□□□□□ -1.96
SSL1	YLR005W	POC4	Q12245	148 aa	Predicted RBP	2.78	□□□□□ -1.96
SSL1	YLR005W	SPS2	P08459	502 aa		2.77	□□□□□ -1.97
SSL1	YLR005W	ACP1	P32463	125 aa		2.77	□□□□□ -1.97
SSL1	YLR005W	SFT2	P38166	215 aa		2.77	□□□□□ -1.97
SSL1	YLR005W	SLM6	P38343	150 aa		2.77	□□□□□ -1.97
SSL1	YLR005W	MIG3	P39943	394 aa		2.77	□□□□□ -1.97
SSL1	YLR005W	YNL200C	P40165	246 aa	Known RBP	2.77	□□□□□ -1.97
SSL1	YLR005W	AIM24	P47127	394 aa		2.77	□□□□□ -1.97
SSL1	YLR005W	YLR179C	Q06252	201 aa	Known RBP	2.77	□□□□□ -1.97
SSL1	YLR005W	CCW12	Q12127	133 aa		2.77	□□□□□ -1.97
SSL1	YLR005W	YPR145C-A	Q2V2P0	78 aa		2.77	□□□□□ -1.97
SSL1	YLR005W	YHR213W-A	Q8TGT4	77 aa		2.77	□□□□□ -1.97
SSL1	YLR005W	PUT1	P09368	476 aa		2.76	□□□□□ -1.97
SSL1	YLR005W	RPS25B	P0C0T4	108 aa	Known RBP	2.76	□□□□□ -1.97
SSL1	YLR005W	TAL1	P15019	335 aa	Known RBP	2.76	□□□□□ -1.97
SSL1	YLR005W	YCR001W	P25347	104 aa		2.76	□□□□□ -1.97
SSL1	YLR005W	YCR025C	P25352	136 aa		2.76	□□□□□ -1.97
SSL1	YLR005W	UTP11	P34247	250 aa	Predicted RBP	2.76	□□□□□ -1.97
SSL1	YLR005W	GLE2	P40066	365 aa		2.76	□□□□□ -1.97
SSL1	YLR005W	YER135C	P40082	130 aa		2.76	□□□□□ -1.97
SSL1	YLR005W	SWM2	P40342	146 aa		2.76	□□□□□ -1.97
SSL1	YLR005W	LCB3	P47013	409 aa		2.76	□□□□□ -1.97
SSL1	YLR005W	BOR1	P53838	576 aa		2.76	□□□□□ -1.97
SSL1	YLR005W	FMP41	P53889	259 aa	Known RBP	2.76	□□□□□ -1.97
SSL1	YLR005W	BER1	Q06688	274 aa	Known RBP	2.76	□□□□□ -1.97
SSL1	YLR005W	AYT1	Q12226	474 aa		2.76	□□□□□ -1.97
SSL1	YLR005W	IES3	Q12345	250 aa		2.76	□□□□□ -1.97
SSL1	YLR005W	RPS25A	Q3E792	108 aa	Predicted RBP	2.76	□□□□□ -1.97
SSL1	YLR005W	YDR157W	A0A023PZE8	133 aa		2.75	□□□□□ -1.97
SSL1	YLR005W	RPL31B	P0C2H9	113 aa	Known RBP	2.75	□□□□□ -1.97
SSL1	YLR005W	RPS2	P25443	254 aa	Known RBP	2.75	□□□□□ -1.97
SSL1	YLR005W	YBR242W	P38331	238 aa		2.75	□□□□□ -1.97
SSL1	YLR005W	PET100	P38958	111 aa		2.75	□□□□□ -1.97
SSL1	YLR005W	MBB1	P39534	108 aa		2.75	□□□□□ -1.97
SSL1	YLR005W	ATG27	P46989	271 aa		2.75	□□□□□ -1.97
SSL1	YLR005W	SNO1	Q03144	224 aa		2.75	□□□□□ -1.97
SSL1	YLR005W	ERP1	Q05359	219 aa	Known RBP	2.75	□□□□□ -1.97
SSL1	YLR005W	YOL160W	Q08321	113 aa		2.75	□□□□□ -1.97
SSL1	YLR005W	COA2	Q3E823	68 aa		2.75	□□□□□ -1.97
SSL1	YLR005W	DDI2	P0CH63	225 aa		2.74	□□□□□ -1.97
SSL1	YLR005W	DDI3	P0CH64	225 aa		2.74	□□□□□ -1.97
SSL1	YLR005W	MRPL20	P22354	195 aa	Predicted RBP	2.74	□□□□□ -1.97
SSL1	YLR005W	EMP24	P32803	203 aa	Known RBP	2.74	□□□□□ -1.97
SSL1	YLR005W	TIR2	P33890	251 aa		2.74	□□□□□ -1.97
SSL1	YLR005W	YHR022C	P38763	256 aa		2.74	□□□□□ -1.97
SSL1	YLR005W	PRE5	P40302	234 aa	Known RBP	2.74	□□□□□ -1.97
SSL1	YLR005W	SPC1	P46965	94 aa		2.74	□□□□□ -1.97
SSL1	YLR005W	YGR149W	P48236	432 aa		2.74	□□□□□ -1.97
SSL1	YLR005W	MRPS16	Q02608	121 aa		2.74	□□□□□ -1.97
SSL1	YLR005W	YMR082C	Q04276	118 aa		2.74	□□□□□ -1.97
SSL1	YLR005W	SHH3	Q04487	196 aa		2.74	□□□□□ -1.97
SSL1	YLR005W	COA4	Q05809	96 aa		2.74	□□□□□ -1.97
SSL1	YLR005W	ERV2	Q12284	196 aa		2.74	□□□□□ -1.97
SSL1	YLR005W	YLR146W-A	Q2V2P1	62 aa		2.74	□□□□□ -1.97
SSL1	YLR005W	YMR316C-A	I2HB70	103 aa		2.74	□□□□□ -1.97
SSL1	YLR005W	QCR9	P22289	66 aa		2.74	□□□□□ -1.97
SSL1	YLR005W	SHB17	P36136	271 aa	Known RBP	2.74	□□□□□ -1.97
SSL1	YLR005W	YEA6	P39953	335 aa		2.74	□□□□□ -1.97
SSL1	YLR005W	YGR269W	P40326	108 aa		2.74	□□□□□ -1.97
SSL1	YLR005W	VHS2	P40463	436 aa		2.74	□□□□□ -1.97
SSL1	YLR005W	RPB3	P16370	318 aa	Known RBP	2.73	□□□□□ -1.97
SSL1	YLR005W	ANB1	P19211	157 aa		2.73	□□□□□ -1.97
SSL1	YLR005W	HSP12	P22943	109 aa	Known RBP	2.73	□□□□□ -1.97
SSL1	YLR005W	PPQ1	P32945	549 aa		2.73	□□□□□ -1.97
SSL1	YLR005W	LSM2	P38203	95 aa	Known RBP	2.73	□□□□□ -1.97
SSL1	YLR005W	IRC22	P40006	225 aa		2.73	□□□□□ -1.97
SSL1	YLR005W	YCH1	P42937	148 aa		2.73	□□□□□ -1.97
SSL1	YLR005W	YPS5	P53057	165 aa		2.73	□□□□□ -1.97
SSL1	YLR005W	PNC1	P53184	216 aa	Known RBP	2.73	□□□□□ -1.97
SSL1	YLR005W	YGR025W	P53216	100 aa		2.73	□□□□□ -1.97
SSL1	YLR005W	MRX11	Q03079	207 aa		2.73	□□□□□ -1.97
SSL1	YLR005W	RRT7	Q07829	113 aa		2.73	□□□□□ -1.97
SSL1	YLR005W	PRR2	Q12310	699 aa		2.73	□□□□□ -1.97
SSL1	YLR005W	YGR240C-A	Q3E786	66 aa		2.73	□□□□□ -1.97
SSL1	YLR005W	CPT1	P17898	393 aa		2.72	□□□□□ -1.97
SSL1	YLR005W	DER1	P38307	211 aa		2.72	□□□□□ -1.97
SSL1	YLR005W	YKE4	P40544	346 aa		2.72	□□□□□ -1.97
SSL1	YLR005W	DID2	P69771	204 aa		2.72	□□□□□ -1.97
SSL1	YLR005W	CTR3	Q06686	241 aa		2.72	□□□□□ -1.97
SSL1	YLR005W	YPL229W	Q99395	206 aa		2.72	□□□□□ -1.97
SSL1	YLR005W	VAR1	P02381	398 aa		2.71	□□□□□ -1.98
SSL1	YLR005W	CUP2	P15315	225 aa		2.71	□□□□□ -1.98
SSL1	YLR005W	TIP1	P27654	210 aa	Predicted RBP	2.71	□□□□□ -1.98
SSL1	YLR005W	YBL059W	P34224	193 aa		2.71	□□□□□ -1.98
SSL1	YLR005W	MRPL4	P36517	319 aa		2.71	□□□□□ -1.98
SSL1	YLR005W	COX16	P47081	118 aa		2.71	□□□□□ -1.98
SSL1	YLR005W	TMA23	Q03525	211 aa		2.71	□□□□□ -1.98
SSL1	YLR005W	ATC1	Q04005	294 aa		2.71	□□□□□ -1.98
SSL1	YLR005W	YPR195C	Q06594	109 aa		2.71	□□□□□ -1.98
SSL1	YLR005W	MRS1	P07266	363 aa		2.7	□□□□□ -1.98
SSL1	YLR005W	YEA4	P40004	342 aa		2.7	□□□□□ -1.98
SSL1	YLR005W	SPI1	P40092	148 aa		2.7	□□□□□ -1.98
SSL1	YLR005W	KEG1	P43614	200 aa		2.7	□□□□□ -1.98
SSL1	YLR005W	RIB4	P50861	169 aa	Predicted RBP	2.7	□□□□□ -1.98
SSL1	YLR005W	YDR366C	P87287	132 aa		2.7	□□□□□ -1.98
SSL1	YLR005W	YMR253C	Q04835	414 aa		2.7	□□□□□ -1.98
SSL1	YLR005W	KRE9	P39005	276 aa		2.69	□□□□□ -1.98
SSL1	YLR005W	TOM7	P53507	60 aa		2.69	□□□□□ -1.98
SSL1	YLR005W	CAF40	P53829	373 aa		2.69	□□□□□ -1.98

Retrieved 100 of 5,963 RNA–protein pairs in 115.6 ms