RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W MST28P39552 234 aa2.77□□□□□ -1.97
USE1YGL098W YNL195CP40168 261 aa2.77□□□□□ -1.97
USE1YGL098W GZF3P42944 551 aaKnown RBP2.77□□□□□ -1.97
USE1YGL098W SBH1P52870 82 aa2.77□□□□□ -1.97
USE1YGL098W YIP1P53039 248 aa2.77□□□□□ -1.97
USE1YGL098W BRR6P53062 197 aa2.77□□□□□ -1.97
USE1YGL098W UPS1Q05776 175 aa2.77□□□□□ -1.97
USE1YGL098W RFM1Q12192 310 aa2.77□□□□□ -1.97
USE1YGL098W USB1Q12208 290 aaKnown RBP2.77□□□□□ -1.97
USE1YGL098W MPD1Q12404 318 aaKnown RBP2.77□□□□□ -1.97
USE1YGL098W MRPL23Q12487 163 aaPredicted RBP2.77□□□□□ -1.97
USE1YGL098W YBL112CQ3E7Y4 105 aa2.77□□□□□ -1.97
USE1YGL098W KTI11Q3E840 82 aa2.77□□□□□ -1.97
USE1YGL098W BNI1P41832 1953 aa2.76□□□□□ -1.97
USE1YGL098W FLO9P39712 1322 aa2.76□□□□□ -1.97
USE1YGL098W CDC26P14724 124 aa2.76□□□□□ -1.97
USE1YGL098W UBC5P15732 148 aa2.76□□□□□ -1.97
USE1YGL098W PHO85P17157 305 aa2.76□□□□□ -1.97
USE1YGL098W MDM10P18409 493 aa2.76□□□□□ -1.97
USE1YGL098W BET2P20133 325 aa2.76□□□□□ -1.97
USE1YGL098W RPA12P32529 125 aaKnown RBP2.76□□□□□ -1.97
USE1YGL098W YHL026CP38740 315 aa2.76□□□□□ -1.97
USE1YGL098W SAS2P40963 338 aa2.76□□□□□ -1.97
USE1YGL098W EGT2P42835 1041 aa2.76□□□□□ -1.97
USE1YGL098W YNR071CP53757 342 aa2.76□□□□□ -1.97
USE1YGL098W SWT21P53873 357 aaPredicted RBP2.76□□□□□ -1.97
USE1YGL098W PIR3Q03180 325 aa2.76□□□□□ -1.97
USE1YGL098W RDL2Q08742 149 aaKnown RBP2.76□□□□□ -1.97
USE1YGL098W YDR029WQ12111 104 aa2.76□□□□□ -1.97
USE1YGL098W AYT1Q12226 474 aa2.76□□□□□ -1.97
USE1YGL098W POC4Q12245 148 aaPredicted RBP2.76□□□□□ -1.97
USE1YGL098W YPR064WQ12492 139 aa2.76□□□□□ -1.97
USE1YGL098W YFL041W-AQ3E817 63 aa2.76□□□□□ -1.97
USE1YGL098W ENV10Q99382 181 aa2.76□□□□□ -1.97
USE1YGL098W PMD1P32634 1753 aa2.75□□□□□ -1.97
USE1YGL098W CPR2P23285 205 aa2.75□□□□□ -1.97
USE1YGL098W INO2P26798 304 aa2.75□□□□□ -1.97
USE1YGL098W PAD1P33751 242 aaKnown RBP RIP-Chip data2.75□□□□□ -1.97not detected
USE1YGL098W YKL070WP36087 169 aa2.75□□□□□ -1.97
USE1YGL098W YKR041WP36134 250 aa2.75□□□□□ -1.97
USE1YGL098W FRM2P37261 193 aa2.75□□□□□ -1.97
USE1YGL098W SNF11P38956 169 aa2.75□□□□□ -1.97
USE1YGL098W YJL193WP39542 402 aa2.75□□□□□ -1.97
USE1YGL098W YNL200CP40165 246 aaKnown RBP2.75□□□□□ -1.97
USE1YGL098W YPL073CP40323 161 aa2.75□□□□□ -1.97
USE1YGL098W YGR269WP40326 108 aa2.75□□□□□ -1.97
USE1YGL098W YIL163CP40448 117 aa2.75□□□□□ -1.97
USE1YGL098W CUP9P41817 306 aa2.75□□□□□ -1.97
USE1YGL098W SDS23P53172 527 aa2.75□□□□□ -1.97
USE1YGL098W BRP1P53194 125 aa2.75□□□□□ -1.97
USE1YGL098W CDH1P53197 566 aa2.75□□□□□ -1.97
USE1YGL098W CPD1P53314 239 aa2.75□□□□□ -1.97
USE1YGL098W WSC2P53832 503 aa2.75□□□□□ -1.97
USE1YGL098W AQR1P53943 586 aa2.75□□□□□ -1.97
USE1YGL098W ERG13P54839 491 aaKnown RBP2.75□□□□□ -1.97
USE1YGL098W COF1Q03048 143 aaKnown RBP2.75□□□□□ -1.97
USE1YGL098W YMR007WQ03675 126 aa2.75□□□□□ -1.97
USE1YGL098W ATG33Q06485 197 aa2.75□□□□□ -1.97
USE1YGL098W YDL218WQ07629 317 aa2.75□□□□□ -1.97
USE1YGL098W FIT3Q08907 204 aa2.75□□□□□ -1.97
USE1YGL098W YAL063C-AQ3E791 96 aa2.75□□□□□ -1.97
USE1YGL098W YLR365WQ7LIF2 110 aa2.75□□□□□ -1.97
USE1YGL098W STT4P37297 1900 aa2.75□□□□□ -1.97
USE1YGL098W LAA1P39526 2014 aa2.75□□□□□ -1.97
USE1YGL098W GSC2P40989 1895 aa2.74□□□□□ -1.97
USE1YGL098W RPL23AP0CX41 137 aaKnown RBP2.74□□□□□ -1.97
USE1YGL098W RPL23BP0CX42 137 aaKnown RBP2.74□□□□□ -1.97
USE1YGL098W YSR3P23501 404 aa2.74□□□□□ -1.97
USE1YGL098W REC114P32841 428 aa2.74□□□□□ -1.97
USE1YGL098W TIM23P32897 222 aa2.74□□□□□ -1.97
USE1YGL098W SPC29P33419 253 aa2.74□□□□□ -1.97
USE1YGL098W RPP1P38786 293 aa2.74□□□□□ -1.97
USE1YGL098W YFR020WP43600 232 aa2.74□□□□□ -1.97
USE1YGL098W LCB3P47013 409 aa2.74□□□□□ -1.97
USE1YGL098W DSK2P48510 373 aa2.74□□□□□ -1.97
USE1YGL098W KNH1P50112 268 aa2.74□□□□□ -1.97
USE1YGL098W MIX17Q03667 156 aa2.74□□□□□ -1.97
USE1YGL098W YMR321CQ04898 105 aa2.74□□□□□ -1.97
USE1YGL098W FCF1Q05498 189 aaPredicted RBP2.74□□□□□ -1.97
USE1YGL098W XYL2Q07993 356 aa2.74□□□□□ -1.97
USE1YGL098W HRT1Q08273 121 aa2.74□□□□□ -1.97
USE1YGL098W DAP1Q12091 152 aa2.74□□□□□ -1.97
USE1YGL098W YLL053CP0CD98 152 aa2.73□□□□□ -1.97
USE1YGL098W MRPS5P33759 307 aa2.73□□□□□ -1.97
USE1YGL098W MID2P36027 376 aa2.73□□□□□ -1.97
USE1YGL098W PAU7P39545 55 aa2.73□□□□□ -1.97
USE1YGL098W ATP19P81451 68 aa2.73□□□□□ -1.97
USE1YGL098W COX12Q01519 83 aa2.73□□□□□ -1.97
USE1YGL098W PET191Q02772 108 aa2.73□□□□□ -1.97
USE1YGL098W RAF1Q06891 181 aa2.73□□□□□ -1.97
USE1YGL098W IRC25Q07951 179 aa2.73□□□□□ -1.97
USE1YGL098W FCY1Q12178 158 aa2.73□□□□□ -1.97
USE1YGL098W CSR2Q12734 1121 aa2.73□□□□□ -1.97
USE1YGL098W DFM1Q12743 341 aaKnown RBP2.73□□□□□ -1.97
USE1YGL098W YPR108W-AQ3E7B3 70 aa2.73□□□□□ -1.97
USE1YGL098W YPL229WQ99395 206 aa2.73□□□□□ -1.97
USE1YGL098W OPI3P05375 206 aa2.72□□□□□ -1.97
USE1YGL098W RPS2P25443 254 aaKnown RBP2.72□□□□□ -1.97
USE1YGL098W YPS1P32329 569 aa2.72□□□□□ -1.97
USE1YGL098W TOM6P33448 61 aa2.72□□□□□ -1.97
Retrieved 100 of 5,963 RNA–protein pairs in 16.5 ms