RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 CRELD2Q6UXH1 353 aaPredicted RBP13.98□□□□□ -0.17
SF3B3-202ENST00000562722 USP49Q70CQ1 688 aa13.98□□□□□ -0.17
SF3B3-202ENST00000562722 SV2BQ7L1I2 683 aa13.98□□□□□ -0.17
SF3B3-202ENST00000562722 FAM160A2Q8N612 972 aaPredicted RBP13.98□□□□□ -0.17
SF3B3-202ENST00000562722 STKLD1Q8NE28 680 aa13.98□□□□□ -0.17
SF3B3-202ENST00000562722 CACTINQ8WUQ7 758 aaKnown RBP13.98□□□□□ -0.17
SF3B3-202ENST00000562722 USP13Q92995 863 aaPredicted RBP13.98□□□□□ -0.17
SF3B3-202ENST00000562722 EBF3Q9H4W6 596 aa13.98□□□□□ -0.17
SF3B3-202ENST00000562722 TRPC7Q9HCX4 862 aa13.98□□□□□ -0.17
SF3B3-202ENST00000562722 TMLHEQ9NVH6 421 aa13.98□□□□□ -0.17
SF3B3-202ENST00000562722 RBAKQ9NYW8 714 aaPredicted RBP13.98□□□□□ -0.17
SF3B3-202ENST00000562722 SEL1LQ9UBV2 794 aa13.98□□□□□ -0.17
SF3B3-202ENST00000562722 STK17AQ9UEE5 414 aa13.98□□□□□ -0.17
SF3B3-202ENST00000562722 SLC8A2Q9UPR5 921 aa13.98□□□□□ -0.17
SF3B3-202ENST00000562722 CCL26Q9Y258 94 aa13.98□□□□□ -0.17
SF3B3-202ENST00000562722 CLIC4Q9Y696 253 aa13.98□□□□□ -0.17
SF3B3-202ENST00000562722 NCOR2Q9Y618 2525 aa13.98□□□□□ -0.17
SF3B3-202ENST00000562722 NUP210Q8TEM1 1887 aaPredicted RBP13.97□□□□□ -0.17
SF3B3-202ENST00000562722 SLC30A4O14863 429 aa13.97□□□□□ -0.17
SF3B3-202ENST00000562722 ATG13O75143 517 aa13.97□□□□□ -0.17
SF3B3-202ENST00000562722 CSH1P0DML2 217 aa13.97□□□□□ -0.17
SF3B3-202ENST00000562722 CSH2P0DML3 217 aa13.97□□□□□ -0.17
SF3B3-202ENST00000562722 CCDC192P0DO97 292 aa13.97□□□□□ -0.17
SF3B3-202ENST00000562722 IDEP14735 1019 aa13.97□□□□□ -0.17
SF3B3-202ENST00000562722 GAP43P17677 238 aa13.97□□□□□ -0.17
SF3B3-202ENST00000562722 ACAT1P24752 427 aaKnown RBP13.97□□□□□ -0.17
SF3B3-202ENST00000562722 ADSSP30520 456 aa13.97□□□□□ -0.17
SF3B3-202ENST00000562722 HOXC13P31276 330 aa13.97□□□□□ -0.17
SF3B3-202ENST00000562722 RPL10AP62906 217 aaKnown RBP13.97□□□□□ -0.17
SF3B3-202ENST00000562722 MYL7Q01449 175 aa13.97□□□□□ -0.17
SF3B3-202ENST00000562722 CEBPZQ03701 1054 aaKnown RBP13.97□□□□□ -0.17
SF3B3-202ENST00000562722 DDR2Q16832 855 aa13.97□□□□□ -0.17
SF3B3-202ENST00000562722 PPM1JQ5JR12 505 aa13.97□□□□□ -0.17
SF3B3-202ENST00000562722 L1TD1Q5T7N2 865 aaKnown RBP13.97□□□□□ -0.17
SF3B3-202ENST00000562722 WDR5BQ86VZ2 330 aa13.97□□□□□ -0.17
SF3B3-202ENST00000562722 PDCL2Q8N4E4 241 aa13.97□□□□□ -0.17
SF3B3-202ENST00000562722 KIF9Q9HAQ2 790 aa13.97□□□□□ -0.17
SF3B3-202ENST00000562722 HPS4Q9NQG7 708 aa13.97□□□□□ -0.17
SF3B3-202ENST00000562722 TDP1Q9NUW8 608 aa13.97□□□□□ -0.17
SF3B3-202ENST00000562722 DDX43Q9NXZ2 648 aaKnown RBP13.97□□□□□ -0.17
SF3B3-202ENST00000562722 R3HCC1Q9Y3T6 440 aaKnown RBP13.97□□□□□ -0.17
SF3B3-202ENST00000562722 GOLGA8IPA6NC78 632 aa13.96□□□□□ -0.17
SF3B3-202ENST00000562722 MYMKA6NI61 221 aa13.96□□□□□ -0.17
SF3B3-202ENST00000562722 GOLGA8JA6NMD2 632 aa13.96□□□□□ -0.17
SF3B3-202ENST00000562722 AXIN1O15169 862 aa13.96□□□□□ -0.17
SF3B3-202ENST00000562722 FOXD2O60548 495 aaPredicted RBP13.96□□□□□ -0.17
SF3B3-202ENST00000562722 RPP40O75818 363 aaKnown RBP13.96□□□□□ -0.17
SF3B3-202ENST00000562722 LDHAP00338 332 aaKnown RBP13.96□□□□□ -0.17
SF3B3-202ENST00000562722 F11P03951 625 aa13.96□□□□□ -0.17
SF3B3-202ENST00000562722 ARSAP15289 507 aa13.96□□□□□ -0.17
SF3B3-202ENST00000562722 HMGA1P17096 107 aaKnown RBP13.96□□□□□ -0.17
SF3B3-202ENST00000562722 PDCP20941 246 aa13.96□□□□□ -0.17
SF3B3-202ENST00000562722 HOXA6P31267 233 aa13.96□□□□□ -0.17
SF3B3-202ENST00000562722 KCNA1Q09470 495 aa13.96□□□□□ -0.17
SF3B3-202ENST00000562722 AASDHQ4L235 1098 aaPredicted RBP13.96□□□□□ -0.17
SF3B3-202ENST00000562722 TMEM196Q5HYL7 178 aa13.96□□□□□ -0.17
SF3B3-202ENST00000562722 FSTL4Q6MZW2 842 aa13.96□□□□□ -0.17
SF3B3-202ENST00000562722 PKN3Q6P5Z2 889 aa13.96□□□□□ -0.17
SF3B3-202ENST00000562722 TMEM150AQ86TG1 271 aa13.96□□□□□ -0.17
SF3B3-202ENST00000562722 MON1AQ86VX9 555 aa13.96□□□□□ -0.17
SF3B3-202ENST00000562722 BRSK2Q8IWQ3 736 aa13.96□□□□□ -0.17
SF3B3-202ENST00000562722 CSGALNACT2Q8N6G5 542 aa13.96□□□□□ -0.17
SF3B3-202ENST00000562722 C12orf50Q8NA57 414 aaPredicted RBP13.96□□□□□ -0.17
SF3B3-202ENST00000562722 EXOC4Q96A65 974 aa13.96□□□□□ -0.17
SF3B3-202ENST00000562722 FAM83CQ9BQN1 747 aa13.96□□□□□ -0.17
SF3B3-202ENST00000562722 UXTQ9UBK9 157 aaPredicted RBP13.96□□□□□ -0.17
SF3B3-202ENST00000562722 ITGA11Q9UKX5 1188 aa13.96□□□□□ -0.17
SF3B3-202ENST00000562722 L1RE1Q9UN81 338 aa13.96□□□□□ -0.17
SF3B3-202ENST00000562722 PCDHB13Q9Y5F0 798 aa13.96□□□□□ -0.17
SF3B3-202ENST00000562722 SCN1AP35498 2009 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 GDF9O60383 454 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 RNF40O75150 1001 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 PPP1R37O75864 691 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 CKMP06732 381 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 TMEM191BP0C7N4 346 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 CYP2F1P24903 491 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 STAT6P42226 847 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 WNT7BP56706 349 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 RBP5P82980 135 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 PDGFRLQ15198 375 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 INTS6LQ5JSJ4 861 aaKnown RBP13.95□□□□□ -0.18
SF3B3-202ENST00000562722 IL31Q6EBC2 164 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 CACNA2D4Q7Z3S7 1137 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 SPATA2LQ8IUW3 424 aaPredicted RBP13.95□□□□□ -0.18
SF3B3-202ENST00000562722 SCN4BQ8IWT1 228 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 ADGRF2Q8IZF7 708 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 TMEM86AQ8N2M4 240 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 CPA6Q8N4T0 437 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 LRRC52Q8N7C0 313 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 C1orf127Q8N9H9 656 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 ZSWIM2Q8NEG5 633 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 GAB3Q8WWW8 586 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 FAM84AQ96KN4 292 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 CLIC6Q96NY7 704 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 ACBD6Q9BR61 282 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 ARRDC1-AS1Q9H2J1 176 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 PCIF1Q9H4Z3 704 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 FBXO2Q9UK22 296 aaPredicted RBP13.95□□□□□ -0.18
SF3B3-202ENST00000562722 GTF3C4Q9UKN8 822 aa13.95□□□□□ -0.18
SF3B3-202ENST00000562722 SNX9Q9Y5X1 595 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms