RNA–Protein interactions for RNA: YIR009W

MSL1, Transcript of U2B component of U2 snRNP, yeastyeast

Gene MSL1, Length 336 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
MSL1YIR009W ERV15P38312 142 aa1.35□□□□□ -2.19
MSL1YIR009W RFC2P40348 353 aa1.35□□□□□ -2.19
MSL1YIR009W SKI6P46948 246 aaPredicted RBP1.35□□□□□ -2.19
MSL1YIR009W COS6P53344 381 aa1.35□□□□□ -2.19
MSL1YIR009W HSK3P69852 69 aa1.35□□□□□ -2.19
MSL1YIR009W DIG2Q03373 323 aaKnown RBP1.35□□□□□ -2.19
MSL1YIR009W FYV12Q08559 129 aa1.35□□□□□ -2.19
MSL1YIR009W YPR202WQ08993 238 aa1.35□□□□□ -2.19
MSL1YIR009W VPS68Q12016 184 aa1.35□□□□□ -2.19
MSL1YIR009W FKS3Q04952 1785 aa1.34□□□□□ -2.19
MSL1YIR009W YAR023CD6VPM8 179 aa1.34□□□□□ -2.19
MSL1YIR009W PET54P10834 293 aa1.34□□□□□ -2.19
MSL1YIR009W PEX4P29340 183 aa1.34□□□□□ -2.19
MSL1YIR009W CPR5P35176 225 aa1.34□□□□□ -2.19
MSL1YIR009W SRP102P36057 244 aaPredicted RBP1.34□□□□□ -2.19
MSL1YIR009W PHO88P38264 188 aaPredicted RBP1.34□□□□□ -2.19
MSL1YIR009W SLM6P38343 150 aa1.34□□□□□ -2.19
MSL1YIR009W YBR285WP38354 144 aa1.34□□□□□ -2.19
MSL1YIR009W VTC1P40046 129 aaRIP-Chip data1.34□□□□□ -2.19not detected
MSL1YIR009W YER134CP40081 178 aa1.34□□□□□ -2.19
MSL1YIR009W TIR3P40552 269 aa1.34□□□□□ -2.19
MSL1YIR009W YFL019CP43576 117 aa1.34□□□□□ -2.19
MSL1YIR009W ERJ5P43613 295 aaPredicted RBP1.34□□□□□ -2.19
MSL1YIR009W MPA43P53583 542 aaPredicted RBP1.34□□□□□ -2.19
MSL1YIR009W YNR062CP53748 327 aa1.34□□□□□ -2.19
MSL1YIR009W TMA20P89886 181 aaPredicted RBP1.34□□□□□ -2.19
MSL1YIR009W RRP17Q04031 235 aaPredicted RBP1.34□□□□□ -2.19
MSL1YIR009W DGK1Q12382 290 aa1.34□□□□□ -2.19
MSL1YIR009W PEX34P25584 144 aa1.33□□□□□ -2.2
MSL1YIR009W YOR062CP36025 268 aa1.33□□□□□ -2.2
MSL1YIR009W FMP23P38231 175 aa1.33□□□□□ -2.2
MSL1YIR009W NSG1P38837 291 aa1.33□□□□□ -2.2
MSL1YIR009W TDA4P47153 279 aa1.33□□□□□ -2.2
MSL1YIR009W DOC1P53068 250 aa1.33□□□□□ -2.2
MSL1YIR009W YGL101WP53144 215 aa1.33□□□□□ -2.2
MSL1YIR009W NQM1P53228 333 aaPredicted RBP1.33□□□□□ -2.2
MSL1YIR009W MPC3P53311 146 aa1.33□□□□□ -2.2
MSL1YIR009W CYT2Q00873 224 aa1.33□□□□□ -2.2
MSL1YIR009W VPS71Q03433 280 aa1.33□□□□□ -2.2
MSL1YIR009W YMR295CQ03559 197 aa1.33□□□□□ -2.2
MSL1YIR009W NAT3Q06504 195 aa1.33□□□□□ -2.2
MSL1YIR009W NSL1Q12143 216 aa1.33□□□□□ -2.2
MSL1YIR009W EMC6Q12431 108 aa1.33□□□□□ -2.2
MSL1YIR009W ODC2Q99297 307 aa1.33□□□□□ -2.2
MSL1YIR009W FLO1P32768 1537 aa1.33□□□□□ -2.2
MSL1YIR009W RAS2P01120 322 aaKnown RBP1.32□□□□□ -2.2
MSL1YIR009W RPL2AP0CX45 254 aaKnown RBP1.32□□□□□ -2.2
MSL1YIR009W RPL2BP0CX46 254 aaKnown RBP1.32□□□□□ -2.2
MSL1YIR009W SPO13P23624 291 aa1.32□□□□□ -2.2
MSL1YIR009W UTR5P32630 166 aa1.32□□□□□ -2.2
MSL1YIR009W FZF1P32805 299 aa1.32□□□□□ -2.2
MSL1YIR009W CLB6P32943 380 aa1.32□□□□□ -2.2
MSL1YIR009W KDX1P36005 433 aa1.32□□□□□ -2.2
MSL1YIR009W PAM17P36147 197 aa1.32□□□□□ -2.2
MSL1YIR009W YNL217WP40152 326 aa1.32□□□□□ -2.2
MSL1YIR009W SOK1P40317 901 aa1.32□□□□□ -2.2
MSL1YIR009W CUP9P41817 306 aa1.32□□□□□ -2.2
MSL1YIR009W BOL2P53082 120 aa1.32□□□□□ -2.2
MSL1YIR009W RGM1Q00453 211 aa1.32□□□□□ -2.2
MSL1YIR009W THI74Q04083 370 aa1.32□□□□□ -2.2
MSL1YIR009W DAS2Q12084 232 aa1.32□□□□□ -2.2
MSL1YIR009W CSF1Q12150 2958 aa1.32□□□□□ -2.2
MSL1YIR009W YLR046CQ12253 270 aa1.32□□□□□ -2.2
MSL1YIR009W YOR097CQ12274 175 aaPredicted RBP1.32□□□□□ -2.2
MSL1YIR009W RPL43AP0CX25 92 aaKnown RBP1.31□□□□□ -2.2
MSL1YIR009W RPL43BP0CX26 92 aa1.31□□□□□ -2.2
MSL1YIR009W TIR1P10863 254 aa1.31□□□□□ -2.2
MSL1YIR009W SCL1P21243 252 aaKnown RBP1.31□□□□□ -2.2
MSL1YIR009W STP22P25604 385 aa1.31□□□□□ -2.2
MSL1YIR009W YHR022CP38763 256 aa1.31□□□□□ -2.2
MSL1YIR009W AGE2P40529 298 aa1.31□□□□□ -2.2
MSL1YIR009W TTI2P47168 421 aa1.31□□□□□ -2.2
MSL1YIR009W ERG25P53045 309 aa1.31□□□□□ -2.2
MSL1YIR009W TIM13P53299 105 aa1.31□□□□□ -2.2
MSL1YIR009W VPS28Q02767 242 aa1.31□□□□□ -2.2
MSL1YIR009W GAL83Q04739 417 aa1.31□□□□□ -2.2
MSL1YIR009W YMR253CQ04835 414 aa1.31□□□□□ -2.2
MSL1YIR009W MEU1Q07938 337 aaKnown RBP RIP-Chip data1.31□□□□□ -2.2not detected
MSL1YIR009W FSF1Q12029 327 aaKnown RBP1.31□□□□□ -2.2
MSL1YIR009W YLR236CA0A023PZG4 107 aa1.3□□□□□ -2.2
MSL1YIR009W UBI4P0CG63 381 aaKnown RBP1.3□□□□□ -2.2
MSL1YIR009W PBI2P0CT04 75 aaKnown RBP1.3□□□□□ -2.2
MSL1YIR009W DAN1P47178 298 aa1.3□□□□□ -2.2
MSL1YIR009W ORM1P53224 222 aa1.3□□□□□ -2.2
MSL1YIR009W LSM3P57743 89 aaKnown RBP1.3□□□□□ -2.2
MSL1YIR009W HHT1P61830 136 aa1.3□□□□□ -2.2
MSL1YIR009W SHH3Q04487 196 aa1.3□□□□□ -2.2
MSL1YIR009W IRC23Q08416 157 aa1.3□□□□□ -2.2
MSL1YIR009W YOR214CQ12282 236 aa1.3□□□□□ -2.2
MSL1YIR009W YDL180WQ12301 547 aa1.3□□□□□ -2.2
MSL1YIR009W YLR412C-AQ3E742 68 aa1.3□□□□□ -2.2
MSL1YIR009W YHR086W-AQ3E746 53 aa1.3□□□□□ -2.2
MSL1YIR009W RIF1P29539 1916 aa1.3□□□□□ -2.2
MSL1YIR009W UBR2Q07963 1872 aa1.29□□□□□ -2.2
MSL1YIR009W RPL30P14120 105 aaKnown RBP1.29□□□□□ -2.2
MSL1YIR009W PTC1P35182 281 aa1.29□□□□□ -2.2
MSL1YIR009W SFK1P35735 353 aa1.29□□□□□ -2.2
MSL1YIR009W YBR220CP38318 560 aa1.29□□□□□ -2.2
MSL1YIR009W GAA1P39012 614 aa1.29□□□□□ -2.2
MSL1YIR009W SPC25P40014 221 aa1.29□□□□□ -2.2
Retrieved 100 of 5,963 RNA–protein pairs in 26.9 ms