RNA–Protein interactions for RNA: YDR049W

VMS1, Transcript of Component of a Cdc48p-complex involved in protein quality control, yeast

Gene VMS1, Length 1,899 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMS1	YDR049W	YKR073C	P36153	106 aa		4.63	□□□□□ -1.67
VMS1	YDR049W	YNL200C	P40165	246 aa	Known RBP	4.63	□□□□□ -1.67
VMS1	YDR049W	STB1	P42845	420 aa		4.63	□□□□□ -1.67
VMS1	YDR049W	YGL262W	P53054	175 aa		4.63	□□□□□ -1.67
VMS1	YDR049W	MCP1	Q12106	302 aa		4.63	□□□□□ -1.67
VMS1	YDR049W	TIM22	Q12328	207 aa		4.63	□□□□□ -1.67
VMS1	YDR049W	YOR020W-A	Q3E824	90 aa		4.63	□□□□□ -1.67
VMS1	YDR049W	APC1	P53886	1748 aa		4.63	□□□□□ -1.67
VMS1	YDR049W	RPS19A	P07280	144 aa	Known RBP	4.62	□□□□□ -1.67
VMS1	YDR049W	RPS19B	P07281	144 aa	Predicted RBP	4.62	□□□□□ -1.67
VMS1	YDR049W	YPR170W-B	P0C5R9	85 aa		4.62	□□□□□ -1.67
VMS1	YDR049W	ERV15	P38312	142 aa		4.62	□□□□□ -1.67
VMS1	YDR049W	SNU13	P39990	126 aa	Known RBP	4.62	□□□□□ -1.67
VMS1	YDR049W	CLD1	P53264	445 aa		4.62	□□□□□ -1.67
VMS1	YDR049W	YNR062C	P53748	327 aa		4.62	□□□□□ -1.67
VMS1	YDR049W	WSC2	P53832	503 aa		4.62	□□□□□ -1.67
VMS1	YDR049W	UPS1	Q05776	175 aa		4.62	□□□□□ -1.67
VMS1	YDR049W	YML100W-A	Q8TGT0	57 aa		4.62	□□□□□ -1.67
VMS1	YDR049W	RSF2	P46974	1380 aa		4.62	□□□□□ -1.67
VMS1	YDR049W	BET1	P22804	142 aa		4.62	□□□□□ -1.67
VMS1	YDR049W	SDH4	P37298	181 aa		4.62	□□□□□ -1.67
VMS1	YDR049W	ECM31	P38122	312 aa		4.62	□□□□□ -1.67
VMS1	YDR049W	YOL014W	Q08110	124 aa		4.62	□□□□□ -1.67
VMS1	YDR049W	RRP5	Q05022	1729 aa	Known RBP	4.61	□□□□□ -1.67
VMS1	YDR049W	TRP1	P00912	224 aa		4.61	□□□□□ -1.67
VMS1	YDR049W	URE2	P23202	354 aa	Known RBP	4.61	□□□□□ -1.67
VMS1	YDR049W	TOD6	P34219	525 aa		4.61	□□□□□ -1.67
VMS1	YDR049W	SKG1	P36169	355 aa		4.61	□□□□□ -1.67
VMS1	YDR049W	YFL019C	P43576	117 aa		4.61	□□□□□ -1.67
VMS1	YDR049W	GNA1	P43577	159 aa	Predicted RBP	4.61	□□□□□ -1.67
VMS1	YDR049W	TY1B-NL2	Q99337	1749 aa	Known RBP	4.61	□□□□□ -1.67
VMS1	YDR049W	CCH1	P50077	2039 aa		4.61	□□□□□ -1.67
VMS1	YDR049W	SPT15	P13393	240 aa	Known RBP	4.6	□□□□□ -1.67
VMS1	YDR049W	HSP12	P22943	109 aa	Known RBP	4.6	□□□□□ -1.67
VMS1	YDR049W	MSA2	P36157	363 aa		4.6	□□□□□ -1.67
VMS1	YDR049W	OM14	P38325	134 aa		4.6	□□□□□ -1.67
VMS1	YDR049W	AVT6	P40074	448 aa		4.6	□□□□□ -1.67
VMS1	YDR049W	YER188W	P40103	239 aa		4.6	□□□□□ -1.67
VMS1	YDR049W	YJL028W	P47062	111 aa		4.6	□□□□□ -1.67
VMS1	YDR049W	EMC4	P53073	190 aa		4.6	□□□□□ -1.67
VMS1	YDR049W	GEP7	P53171	287 aa		4.6	□□□□□ -1.67
VMS1	YDR049W	OSH6	Q02201	448 aa		4.6	□□□□□ -1.67
VMS1	YDR049W	YDR415C	Q04033	374 aa	Predicted RBP	4.6	□□□□□ -1.67
VMS1	YDR049W	DDP1	Q99321	188 aa	Known RBP	4.6	□□□□□ -1.67
VMS1	YDR049W	ATR1	P13090	542 aa		4.6	□□□□□ -1.67
VMS1	YDR049W	MRS4	P23500	304 aa		4.6	□□□□□ -1.67
VMS1	YDR049W	YNL208W	P40159	199 aa	Known RBP	4.6	□□□□□ -1.67
VMS1	YDR049W	PHS1	P40857	217 aa		4.6	□□□□□ -1.67
VMS1	YDR049W	PFS2	P42841	465 aa	Known RBP	4.6	□□□□□ -1.67
VMS1	YDR049W	NCA3	P46955	337 aa		4.6	□□□□□ -1.67
VMS1	YDR049W	YJR085C	P47131	105 aa	Known RBP	4.6	□□□□□ -1.67
VMS1	YDR049W	EST3	Q03096	181 aa		4.6	□□□□□ -1.67
VMS1	YDR049W	YRF1-2	P40105	1681 aa		4.59	□□□□□ -1.67
VMS1	YDR049W	YER190C-B	P0CX94	160 aa		4.59	□□□□□ -1.67
VMS1	YDR049W	YEL077W-A	P0CX95	160 aa		4.59	□□□□□ -1.67
VMS1	YDR049W	YGR296C-B	P0CX96	160 aa		4.59	□□□□□ -1.67
VMS1	YDR049W	YPL283W-B	P0CX97	160 aa		4.59	□□□□□ -1.67
VMS1	YDR049W	YPR204C-A	P0CX98	160 aa		4.59	□□□□□ -1.67
VMS1	YDR049W	CPR1	P14832	162 aa	Known RBP	4.59	□□□□□ -1.67
VMS1	YDR049W	SHE1	P38200	338 aa		4.59	□□□□□ -1.67
VMS1	YDR049W	HTD2	P38790	280 aa	Known RBP	4.59	□□□□□ -1.67
VMS1	YDR049W	YHR130C	P38834	111 aa		4.59	□□□□□ -1.67
VMS1	YDR049W	YAR029W	P39549	74 aa		4.59	□□□□□ -1.67
VMS1	YDR049W	MPM1	P40364	252 aa		4.59	□□□□□ -1.67
VMS1	YDR049W	GAT4	P40569	121 aa		4.59	□□□□□ -1.67
VMS1	YDR049W	PGU1	P47180	361 aa		4.59	□□□□□ -1.67
VMS1	YDR049W	URA5	P13298	226 aa	Known RBP	4.58	□□□□□ -1.68
VMS1	YDR049W	TOM40	P23644	387 aa	Known RBP	4.58	□□□□□ -1.68
VMS1	YDR049W	SFT2	P38166	215 aa		4.58	□□□□□ -1.68
VMS1	YDR049W	GAA1	P39012	614 aa		4.58	□□□□□ -1.68
VMS1	YDR049W	GTT1	P40582	234 aa		4.58	□□□□□ -1.68
VMS1	YDR049W	SYS1	P41544	203 aa		4.58	□□□□□ -1.68
VMS1	YDR049W	EAF6	P47128	113 aa		4.58	□□□□□ -1.68
VMS1	YDR049W	BAT2	P47176	376 aa	Known RBP	4.58	□□□□□ -1.68
VMS1	YDR049W	YPL264C	Q08980	353 aa		4.58	□□□□□ -1.68
VMS1	YDR049W	ADE6	P38972	1358 aa	Known RBP	4.58	□□□□□ -1.68
VMS1	YDR049W	RPB5	P20434	215 aa		4.58	□□□□□ -1.68
VMS1	YDR049W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
VMS1	YDR049W	FYV4	P38783	130 aa	Predicted RBP	4.58	□□□□□ -1.68
VMS1	YDR049W	YPL039W	Q03080	316 aa		4.58	□□□□□ -1.68
VMS1	YDR049W	YLR156W	P0CE96	114 aa		4.57	□□□□□ -1.68
VMS1	YDR049W	YLR159W	P0CE97	114 aa		4.57	□□□□□ -1.68
VMS1	YDR049W	YLR161W	P0CE98	114 aa		4.57	□□□□□ -1.68
VMS1	YDR049W	RPL42A	P0CX27	106 aa	Known RBP	4.57	□□□□□ -1.68
VMS1	YDR049W	RPL42B	P0CX28	106 aa	Known RBP	4.57	□□□□□ -1.68
VMS1	YDR049W	SPC25	P40014	221 aa		4.57	□□□□□ -1.68
VMS1	YDR049W	BNS1	P50084	137 aa		4.57	□□□□□ -1.68
VMS1	YDR049W	SPG3	Q04398	127 aa	Predicted RBP	4.57	□□□□□ -1.68
VMS1	YDR049W	YOR097C	Q12274	175 aa	Predicted RBP	4.57	□□□□□ -1.68
VMS1	YDR049W	URB1	P34241	1764 aa	Known RBP	4.57	□□□□□ -1.68
VMS1	YDR049W	ATP15	P21306	62 aa		4.56	□□□□□ -1.68
VMS1	YDR049W	VMA11	P32842	164 aa		4.56	□□□□□ -1.68
VMS1	YDR049W	HOT13	P36078	116 aa		4.56	□□□□□ -1.68
VMS1	YDR049W	MOH1	P38191	138 aa		4.56	□□□□□ -1.68
VMS1	YDR049W	YCL001W-A	P87012	153 aa		4.56	□□□□□ -1.68
VMS1	YDR049W	YMR103C	Q04436	120 aa		4.56	□□□□□ -1.68
VMS1	YDR049W	YMR254C	Q04838	102 aa		4.56	□□□□□ -1.68
VMS1	YDR049W	SLD7	Q08457	257 aa		4.56	□□□□□ -1.68
VMS1	YDR049W	ATO3	Q12359	275 aa		4.56	□□□□□ -1.68
VMS1	YDR049W	SGA1	P08019	549 aa		4.56	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 79.6 ms