RNA–Protein interactions for RNA: YDR007W

TRP1, Transcript of Phosphoribosylanthranilate isomerase, yeast

Gene TRP1, Length 675 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRP1	YDR007W	YCR075W-A	Q3E830	75 aa		4.77	□□□□□ -1.65
TRP1	YDR007W	MBF1	O14467	151 aa	Known RBP	4.76	□□□□□ -1.65
TRP1	YDR007W	YCR023C	P25351	611 aa		4.76	□□□□□ -1.65
TRP1	YDR007W	PPA2	P28239	310 aa		4.76	□□□□□ -1.65
TRP1	YDR007W	MDH3	P32419	343 aa	Known RBP RIP-Chip data	4.76	□□□□□ -1.65	not detected
TRP1	YDR007W	PAU2	P32612	120 aa		4.76	□□□□□ -1.65
TRP1	YDR007W	PRP18	P33411	251 aa	Predicted RBP	4.76	□□□□□ -1.65
TRP1	YDR007W	PAN3	P36102	679 aa	Predicted RBP	4.76	□□□□□ -1.65
TRP1	YDR007W	MRPL24	P36525	258 aa	Predicted RBP	4.76	□□□□□ -1.65
TRP1	YDR007W	SWD3	P38123	315 aa		4.76	□□□□□ -1.65
TRP1	YDR007W	DOG2	P38773	246 aa		4.76	□□□□□ -1.65
TRP1	YDR007W	HMF1	P40037	129 aa	Known RBP	4.76	□□□□□ -1.65
TRP1	YDR007W	RPL13B	P40212	199 aa	Known RBP	4.76	□□□□□ -1.65
TRP1	YDR007W	MOB1	P40484	314 aa		4.76	□□□□□ -1.65
TRP1	YDR007W	SMD3	P43321	101 aa	Known RBP	4.76	□□□□□ -1.65
TRP1	YDR007W	VHT1	P53241	593 aa		4.76	□□□□□ -1.65
TRP1	YDR007W	APS2	Q00381	147 aa		4.76	□□□□□ -1.65
TRP1	YDR007W	YTH1	Q06102	208 aa	Predicted RBP	4.76	□□□□□ -1.65
TRP1	YDR007W	YLR146W-A	Q2V2P1	62 aa		4.76	□□□□□ -1.65
TRP1	YDR007W	PAU16	P35994	123 aa		4.75	□□□□□ -1.65
TRP1	YDR007W	OM14	P38325	134 aa		4.75	□□□□□ -1.65
TRP1	YDR007W	TAE1	P38340	232 aa		4.75	□□□□□ -1.65
TRP1	YDR007W	YBR292C	P38357	123 aa		4.75	□□□□□ -1.65
TRP1	YDR007W	YHR127W	P38833	243 aa	Known RBP	4.75	□□□□□ -1.65
TRP1	YDR007W	DLS1	P40366	167 aa		4.75	□□□□□ -1.65
TRP1	YDR007W	YIA6	P40556	373 aa		4.75	□□□□□ -1.65
TRP1	YDR007W	UBC13	P52490	153 aa		4.75	□□□□□ -1.65
TRP1	YDR007W	YGR015C	P53208	328 aa		4.75	□□□□□ -1.65
TRP1	YDR007W	SCW10	Q04951	389 aa		4.75	□□□□□ -1.65
TRP1	YDR007W	TAZ1	Q06510	381 aa		4.75	□□□□□ -1.65
TRP1	YDR007W	GEP5	Q12393	293 aa		4.75	□□□□□ -1.65
TRP1	YDR007W	YPR064W	Q12492	139 aa		4.75	□□□□□ -1.65
TRP1	YDR007W	PMD1	P32634	1753 aa		4.75	□□□□□ -1.65
TRP1	YDR007W	RPL27A	P0C2H6	136 aa	Known RBP	4.74	□□□□□ -1.65
TRP1	YDR007W	RPL27B	P0C2H7	136 aa	Known RBP	4.74	□□□□□ -1.65
TRP1	YDR007W	RPB11	P38902	120 aa		4.74	□□□□□ -1.65
TRP1	YDR007W	OTU1	P43558	301 aa		4.74	□□□□□ -1.65
TRP1	YDR007W	YJR015W	P47090	510 aa		4.74	□□□□□ -1.65
TRP1	YDR007W	XPT1	P47165	209 aa		4.74	□□□□□ -1.65
TRP1	YDR007W	TTI2	P47168	421 aa		4.74	□□□□□ -1.65
TRP1	YDR007W	CPD1	P53314	239 aa		4.74	□□□□□ -1.65
TRP1	YDR007W	NRM1	P53718	249 aa		4.74	□□□□□ -1.65
TRP1	YDR007W	YML079W	Q03629	201 aa		4.74	□□□□□ -1.65
TRP1	YDR007W	ELP6	Q04868	273 aa		4.74	□□□□□ -1.65
TRP1	YDR007W	SUE1	Q06524	206 aa		4.74	□□□□□ -1.65
TRP1	YDR007W	RPL21B	Q12672	160 aa	Known RBP	4.74	□□□□□ -1.65
TRP1	YDR007W	ECM29	P38737	1868 aa		4.74	□□□□□ -1.65
TRP1	YDR007W	COX9	P07255	59 aa		4.73	□□□□□ -1.65
TRP1	YDR007W	SBH2	P52871	88 aa		4.73	□□□□□ -1.65
TRP1	YDR007W	TPC1	P53257	314 aa		4.73	□□□□□ -1.65
TRP1	YDR007W	ADD37	Q03233	198 aa		4.73	□□□□□ -1.65
TRP1	YDR007W	YOL024W	Q08172	172 aa		4.73	□□□□□ -1.65
TRP1	YDR007W	YDL157C	Q12082	118 aa		4.73	□□□□□ -1.65
TRP1	YDR007W	YLR050C	Q12155	161 aa	Known RBP	4.73	□□□□□ -1.65
TRP1	YDR007W	RAX2	Q12465	1220 aa		4.73	□□□□□ -1.65
TRP1	YDR007W	CWP1	P28319	239 aa		4.72	□□□□□ -1.65
TRP1	YDR007W	DRE2	P36152	348 aa		4.72	□□□□□ -1.65
TRP1	YDR007W	RPS20	P38701	121 aa	Known RBP	4.72	□□□□□ -1.65
TRP1	YDR007W	YHR130C	P38834	111 aa		4.72	□□□□□ -1.65
TRP1	YDR007W	PET8	P38921	284 aa		4.72	□□□□□ -1.65
TRP1	YDR007W	YEL028W	P39989	153 aa		4.72	□□□□□ -1.65
TRP1	YDR007W	YER085C	P40058	173 aa		4.72	□□□□□ -1.65
TRP1	YDR007W	MSL1	P40567	111 aa	Predicted RBP	4.72	□□□□□ -1.65
TRP1	YDR007W	IGD1	P43598	195 aa		4.72	□□□□□ -1.65
TRP1	YDR007W	YDR115W	Q04598	105 aa		4.72	□□□□□ -1.65
TRP1	YDR007W	RRT7	Q07829	113 aa		4.72	□□□□□ -1.65
TRP1	YDR007W	MCP1	Q12106	302 aa		4.72	□□□□□ -1.65
TRP1	YDR007W	RAD6	P06104	172 aa		4.71	□□□□□ -1.66
TRP1	YDR007W	NOP1	P15646	327 aa	Known RBP	4.71	□□□□□ -1.66
TRP1	YDR007W	MRPL20	P22354	195 aa	Predicted RBP	4.71	□□□□□ -1.66
TRP1	YDR007W	HYP2	P23301	157 aa	Known RBP	4.71	□□□□□ -1.66
TRP1	YDR007W	TRR1	P29509	319 aa	Known RBP	4.71	□□□□□ -1.66
TRP1	YDR007W	UGX2	P32772	223 aa		4.71	□□□□□ -1.66
TRP1	YDR007W	SLM6	P38343	150 aa		4.71	□□□□□ -1.66
TRP1	YDR007W	RPL14B	P38754	138 aa	Known RBP	4.71	□□□□□ -1.66
TRP1	YDR007W	TIS11	P47977	285 aa		4.71	□□□□□ -1.66
TRP1	YDR007W	YMR252C	Q04814	134 aa		4.71	□□□□□ -1.66
TRP1	YDR007W	GRX8	Q05926	109 aa		4.71	□□□□□ -1.66
TRP1	YDR007W	SEI1	Q06058	285 aa		4.71	□□□□□ -1.66
TRP1	YDR007W	YPR098C	Q06089	161 aa		4.71	□□□□□ -1.66
TRP1	YDR007W	IES4	Q08561	116 aa		4.71	□□□□□ -1.66
TRP1	YDR007W	YPL162C	Q12042	273 aa		4.71	□□□□□ -1.66
TRP1	YDR007W	YLR363W-A	Q3E747	85 aa		4.71	□□□□□ -1.66
TRP1	YDR007W	YCL012C	Q8J0M4	134 aa		4.71	□□□□□ -1.66
TRP1	YDR007W	PCL1	P24867	279 aa		4.7	□□□□□ -1.66
TRP1	YDR007W	MIG1	P27705	504 aa		4.7	□□□□□ -1.66
TRP1	YDR007W	TKL2	P33315	681 aa		4.7	□□□□□ -1.66
TRP1	YDR007W	ECM33	P38248	429 aa	Known RBP	4.7	□□□□□ -1.66
TRP1	YDR007W	UMP1	P38293	148 aa		4.7	□□□□□ -1.66
TRP1	YDR007W	DER1	P38307	211 aa		4.7	□□□□□ -1.66
TRP1	YDR007W	FYV4	P38783	130 aa	Predicted RBP	4.7	□□□□□ -1.66
TRP1	YDR007W	YEA4	P40004	342 aa		4.7	□□□□□ -1.66
TRP1	YDR007W	PRE5	P40302	234 aa	Known RBP	4.7	□□□□□ -1.66
TRP1	YDR007W	PAM16	P42949	149 aa		4.7	□□□□□ -1.66
TRP1	YDR007W	MZM1	Q03429	123 aa	Predicted RBP	4.7	□□□□□ -1.66
TRP1	YDR007W	YPR174C	Q06616	221 aa	Predicted RBP	4.7	□□□□□ -1.66
TRP1	YDR007W	YOR376W	Q08900	122 aa		4.7	□□□□□ -1.66
TRP1	YDR007W	ADH1	P00330	348 aa	Known RBP	4.69	□□□□□ -1.66
TRP1	YDR007W	CPA1	P07258	411 aa	Known RBP	4.69	□□□□□ -1.66
TRP1	YDR007W	INO4	P13902	151 aa		4.69	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 62.2 ms