RNA–Protein interactions for RNA: YJL001W

PRE3, Transcript of Beta 1 subunit of the 20S proteasome, yeast

Gene PRE3, Length 648 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRE3	YJL001W	RIB7	P33312	244 aa		4.65	□□□□□ -1.67
PRE3	YJL001W	ATP3	P38077	311 aa	Known RBP	4.65	□□□□□ -1.67
PRE3	YJL001W	POP2	P39008	433 aa		4.65	□□□□□ -1.67
PRE3	YJL001W	YER137C	P40083	148 aa	Known RBP	4.65	□□□□□ -1.67
PRE3	YJL001W	RBL2	P48606	106 aa	Known RBP	4.65	□□□□□ -1.67
PRE3	YJL001W	CPD1	P53314	239 aa		4.65	□□□□□ -1.67
PRE3	YJL001W	EOS1	P53938	366 aa		4.65	□□□□□ -1.67
PRE3	YJL001W	SOD1	P00445	154 aa	Known RBP	4.64	□□□□□ -1.67
PRE3	YJL001W	NOP1	P15646	327 aa	Known RBP	4.64	□□□□□ -1.67
PRE3	YJL001W	GPX2	P38143	162 aa		4.64	□□□□□ -1.67
PRE3	YJL001W	QDR3	P38227	689 aa		4.64	□□□□□ -1.67
PRE3	YJL001W	FMP23	P38231	175 aa		4.64	□□□□□ -1.67
PRE3	YJL001W	YHR138C	P38841	114 aa	Predicted RBP	4.64	□□□□□ -1.67
PRE3	YJL001W	LST8	P41318	303 aa		4.64	□□□□□ -1.67
PRE3	YJL001W	HAM1	P47119	197 aa	Known RBP	4.64	□□□□□ -1.67
PRE3	YJL001W	MEH1	Q02205	184 aa		4.64	□□□□□ -1.67
PRE3	YJL001W	FSH2	Q05015	223 aa		4.64	□□□□□ -1.67
PRE3	YJL001W	RDS3	Q06835	107 aa	Predicted RBP	4.64	□□□□□ -1.67
PRE3	YJL001W	HRD1	Q08109	551 aa		4.64	□□□□□ -1.67
PRE3	YJL001W	MED4	Q12343	284 aa		4.64	□□□□□ -1.67
PRE3	YJL001W	MRS3	P10566	314 aa		4.63	□□□□□ -1.67
PRE3	YJL001W	HOM6	P31116	359 aa	Known RBP	4.63	□□□□□ -1.67
PRE3	YJL001W	YPT31	P38555	223 aa	Known RBP	4.63	□□□□□ -1.67
PRE3	YJL001W	AIM20	P40451	204 aa		4.63	□□□□□ -1.67
PRE3	YJL001W	YPI1	P43587	155 aa		4.63	□□□□□ -1.67
PRE3	YJL001W	RPA34	P47006	233 aa	Predicted RBP	4.63	□□□□□ -1.67
PRE3	YJL001W	KEI1	Q06346	221 aa		4.63	□□□□□ -1.67
PRE3	YJL001W	YPR013C	Q12145	317 aa		4.63	□□□□□ -1.67
PRE3	YJL001W	UBA3	Q99344	299 aa		4.63	□□□□□ -1.67
PRE3	YJL001W	TRR1	P29509	319 aa	Known RBP	4.62	□□□□□ -1.67
PRE3	YJL001W	FMT1	P32785	401 aa		4.62	□□□□□ -1.67
PRE3	YJL001W	HTD2	P38790	280 aa	Known RBP	4.62	□□□□□ -1.67
PRE3	YJL001W	AGX1	P43567	385 aa		4.62	□□□□□ -1.67
PRE3	YJL001W	SPO19	Q03029	223 aa		4.62	□□□□□ -1.67
PRE3	YJL001W	MGR3	Q04472	501 aa		4.62	□□□□□ -1.67
PRE3	YJL001W	DCS1	Q06151	350 aa		4.62	□□□□□ -1.67
PRE3	YJL001W	DCP1	Q12517	231 aa	Predicted RBP	4.62	□□□□□ -1.67
PRE3	YJL001W	YFR035C	P43608	114 aa		4.61	□□□□□ -1.67
PRE3	YJL001W	ERV25	P54837	211 aa	Known RBP	4.61	□□□□□ -1.67
PRE3	YJL001W	YML018C	Q03730	393 aa		4.61	□□□□□ -1.67
PRE3	YJL001W	VBA1	Q04301	562 aa		4.61	□□□□□ -1.67
PRE3	YJL001W	PEX27	Q08580	376 aa		4.61	□□□□□ -1.67
PRE3	YJL001W	SUS1	Q6WNK7	96 aa		4.61	□□□□□ -1.67
PRE3	YJL001W	MIR1	P23641	311 aa	Known RBP	4.6	□□□□□ -1.67
PRE3	YJL001W	YAR068W	P39564	161 aa		4.6	□□□□□ -1.67
PRE3	YJL001W	JLP2	P40206	208 aa		4.6	□□□□□ -1.67
PRE3	YJL001W	DFG10	P40526	253 aa		4.6	□□□□□ -1.67
PRE3	YJL001W	ERV29	P53337	310 aa		4.6	□□□□□ -1.67
PRE3	YJL001W	GIS2	P53849	153 aa	Known RBP RIP-Chip data	4.6	□□□□□ -1.67	not detected
PRE3	YJL001W	SWT21	P53873	357 aa	Predicted RBP	4.6	□□□□□ -1.67
PRE3	YJL001W	OCA2	P53949	197 aa		4.6	□□□□□ -1.67
PRE3	YJL001W	ATG39	Q06159	398 aa		4.6	□□□□□ -1.67
PRE3	YJL001W	YNG1	Q08465	219 aa		4.6	□□□□□ -1.67
PRE3	YJL001W	MSH5	Q12175	901 aa		4.6	□□□□□ -1.67
PRE3	YJL001W	IES3	Q12345	250 aa		4.6	□□□□□ -1.67
PRE3	YJL001W	CAP2	P13517	287 aa		4.59	□□□□□ -1.67
PRE3	YJL001W	MRPL27	P36526	146 aa	Predicted RBP	4.59	□□□□□ -1.67
PRE3	YJL001W	WSS1	P38838	269 aa		4.59	□□□□□ -1.67
PRE3	YJL001W	SIM1	P40472	476 aa		4.59	□□□□□ -1.67
PRE3	YJL001W	CAT5	P41735	233 aa		4.59	□□□□□ -1.67
PRE3	YJL001W	ARP3	P47117	449 aa	Known RBP	4.59	□□□□□ -1.67
PRE3	YJL001W	ALG13	P53178	202 aa		4.59	□□□□□ -1.67
PRE3	YJL001W	COX12	Q01519	83 aa		4.59	□□□□□ -1.67
PRE3	YJL001W	FMP42	Q04991	504 aa		4.59	□□□□□ -1.67
PRE3	YJL001W	YLR031W	Q07978	186 aa		4.59	□□□□□ -1.67
PRE3	YJL001W	RAD28	Q12021	506 aa		4.59	□□□□□ -1.67
PRE3	YJL001W	YOR283W	Q12040	230 aa	Known RBP	4.59	□□□□□ -1.67
PRE3	YJL001W	CYC3	P06182	269 aa		4.58	□□□□□ -1.68
PRE3	YJL001W	YCR043C	P25361	127 aa		4.58	□□□□□ -1.68
PRE3	YJL001W	SAS2	P40963	338 aa		4.58	□□□□□ -1.68
PRE3	YJL001W	TDA4	P47153	279 aa		4.58	□□□□□ -1.68
PRE3	YJL001W	MIC26	P50087	233 aa		4.58	□□□□□ -1.68
PRE3	YJL001W	SSU72	P53538	206 aa	Predicted RBP	4.58	□□□□□ -1.68
PRE3	YJL001W	YIF1	P53845	314 aa	Known RBP	4.58	□□□□□ -1.68
PRE3	YJL001W	RRG8	Q06109	277 aa		4.58	□□□□□ -1.68
PRE3	YJL001W	SYM1	Q06563	197 aa		4.58	□□□□□ -1.68
PRE3	YJL001W	PET20	Q99373	253 aa		4.58	□□□□□ -1.68
PRE3	YJL001W	RNP1	P32385	249 aa		4.57	□□□□□ -1.68
PRE3	YJL001W	MBA1	P38300	278 aa		4.57	□□□□□ -1.68
PRE3	YJL001W	DOG2	P38773	246 aa		4.57	□□□□□ -1.68
PRE3	YJL001W	DOG1	P38774	246 aa		4.57	□□□□□ -1.68
PRE3	YJL001W	MST28	P39552	234 aa		4.57	□□□□□ -1.68
PRE3	YJL001W	VHS2	P40463	436 aa		4.57	□□□□□ -1.68
PRE3	YJL001W	MST27	P53176	234 aa		4.57	□□□□□ -1.68
PRE3	YJL001W	MSO1	P53604	210 aa	Known RBP	4.57	□□□□□ -1.68
PRE3	YJL001W	STF1	P01098	86 aa		4.56	□□□□□ -1.68
PRE3	YJL001W	DAD2	P36162	133 aa		4.56	□□□□□ -1.68
PRE3	YJL001W	YHR122W	P38829	231 aa		4.56	□□□□□ -1.68
PRE3	YJL001W	ARO8	P53090	500 aa	Known RBP	4.56	□□□□□ -1.68
PRE3	YJL001W	FYV6	P53913	173 aa		4.56	□□□□□ -1.68
PRE3	YJL001W	THI74	Q04083	370 aa		4.56	□□□□□ -1.68
PRE3	YJL001W	TIM18	Q08749	192 aa		4.56	□□□□□ -1.68
PRE3	YJL001W	SCP1	Q08873	200 aa		4.56	□□□□□ -1.68
PRE3	YJL001W	FEX1	Q08913	375 aa		4.56	□□□□□ -1.68
PRE3	YJL001W	FEX2	Q08991	375 aa		4.56	□□□□□ -1.68
PRE3	YJL001W	AGC1	Q12482	902 aa		4.56	□□□□□ -1.68
PRE3	YJL001W	YGL258W-A	Q3E740	77 aa		4.56	□□□□□ -1.68
PRE3	YJL001W	CPR4	P25334	318 aa		4.55	□□□□□ -1.68
PRE3	YJL001W	RPS0A	P32905	252 aa	Known RBP	4.55	□□□□□ -1.68
PRE3	YJL001W	HPA3	P39979	161 aa		4.55	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 148.6 ms