RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C FPR1P20081 114 aaKnown RBP0.79□□□□□ -2.28
RTR1YER139C SPO13P23624 291 aa0.79□□□□□ -2.28
RTR1YER139C HSP30P25619 332 aa0.79□□□□□ -2.28
RTR1YER139C OCH1P31755 480 aa0.79□□□□□ -2.28
RTR1YER139C FZF1P32805 299 aa0.79□□□□□ -2.28
RTR1YER139C CLG1P35190 452 aa0.79□□□□□ -2.28
RTR1YER139C KDX1P36005 433 aa0.79□□□□□ -2.28
RTR1YER139C SHE2P36068 246 aaKnown RBP RIP-Chip data0.79□□□□□ -2.28not detected
RTR1YER139C NSA2P40078 261 aaKnown RBP0.79□□□□□ -2.28
RTR1YER139C GLR1P41921 483 aaKnown RBP0.79□□□□□ -2.28
RTR1YER139C YNR077CP53758 84 aa0.79□□□□□ -2.28
RTR1YER139C YKR005CQ02203 525 aa0.79□□□□□ -2.28
RTR1YER139C RAV2Q03956 351 aa0.79□□□□□ -2.28
RTR1YER139C YPR127WQ06494 345 aa0.79□□□□□ -2.28
RTR1YER139C CSI2Q08054 341 aa0.79□□□□□ -2.28
RTR1YER139C RAD28Q12021 506 aa0.79□□□□□ -2.28
RTR1YER139C FSF1Q12029 327 aaKnown RBP0.79□□□□□ -2.28
RTR1YER139C YLR412C-AQ3E742 68 aa0.79□□□□□ -2.28
RTR1YER139C FLO9P39712 1322 aa0.79□□□□□ -2.28
RTR1YER139C YIL177CP40434 1758 aa0.78□□□□□ -2.28
RTR1YER139C YJL225CP40889 1758 aa0.78□□□□□ -2.28
RTR1YER139C YLR236CA0A023PZG4 107 aa0.78□□□□□ -2.28
RTR1YER139C ARO7P32178 256 aa0.78□□□□□ -2.28
RTR1YER139C PTC1P35182 281 aa0.78□□□□□ -2.28
RTR1YER139C UPS2P35200 230 aa0.78□□□□□ -2.28
RTR1YER139C PAM17P36147 197 aa0.78□□□□□ -2.28
RTR1YER139C GIM4P40005 111 aaKnown RBP0.78□□□□□ -2.28
RTR1YER139C YFL019CP43576 117 aa0.78□□□□□ -2.28
RTR1YER139C DOC1P53068 250 aa0.78□□□□□ -2.28
RTR1YER139C BOL2P53082 120 aa0.78□□□□□ -2.28
RTR1YER139C YGL193CP53097 103 aa0.78□□□□□ -2.28
RTR1YER139C NQM1P53228 333 aaPredicted RBP0.78□□□□□ -2.28
RTR1YER139C PIR1Q03178 341 aa0.78□□□□□ -2.28
RTR1YER139C DIG2Q03373 323 aaKnown RBP0.78□□□□□ -2.28
RTR1YER139C PKR1Q03880 122 aaKnown RBP0.78□□□□□ -2.28
RTR1YER139C THI74Q04083 370 aa0.78□□□□□ -2.28
RTR1YER139C YMR253CQ04835 414 aa0.78□□□□□ -2.28
RTR1YER139C YLR162WQ06235 118 aa0.78□□□□□ -2.28
RTR1YER139C ANT1Q06497 328 aa0.78□□□□□ -2.28
RTR1YER139C YHR007C-AQ07074 71 aa0.78□□□□□ -2.28
RTR1YER139C NSL1Q12143 216 aa0.78□□□□□ -2.28
RTR1YER139C YDL180WQ12301 547 aa0.78□□□□□ -2.28
RTR1YER139C DGK1Q12382 290 aa0.78□□□□□ -2.28
RTR1YER139C ATG40Q99325 256 aa0.78□□□□□ -2.28
RTR1YER139C UBI4P0CG63 381 aaKnown RBP0.77□□□□□ -2.29
RTR1YER139C RPL2AP0CX45 254 aaKnown RBP0.77□□□□□ -2.29
RTR1YER139C RPL2BP0CX46 254 aaKnown RBP0.77□□□□□ -2.29
RTR1YER139C TIR1P10863 254 aa0.77□□□□□ -2.29
RTR1YER139C IDP1P21954 428 aaKnown RBP0.77□□□□□ -2.29
RTR1YER139C GSP2P32836 220 aaKnown RBP0.77□□□□□ -2.29
RTR1YER139C NUF2P33895 451 aa0.77□□□□□ -2.29
RTR1YER139C POP7P38291 140 aa0.77□□□□□ -2.29
RTR1YER139C GAA1P39012 614 aa0.77□□□□□ -2.29
RTR1YER139C SPC25P40014 221 aa0.77□□□□□ -2.29
RTR1YER139C YPL073CP40323 161 aa0.77□□□□□ -2.29
RTR1YER139C APQ12P40532 138 aa0.77□□□□□ -2.29
RTR1YER139C LSM1P47017 172 aaKnown RBP0.77□□□□□ -2.29
RTR1YER139C TTI2P47168 421 aa0.77□□□□□ -2.29
RTR1YER139C YGL204CP53089 101 aa0.77□□□□□ -2.29
RTR1YER139C LSM3P57743 89 aaKnown RBP0.77□□□□□ -2.29
RTR1YER139C UPS3Q04006 179 aa0.77□□□□□ -2.29
RTR1YER139C YPD1Q07688 167 aa0.77□□□□□ -2.29
RTR1YER139C IRC23Q08416 157 aa0.77□□□□□ -2.29
RTR1YER139C FYV12Q08559 129 aa0.77□□□□□ -2.29
RTR1YER139C YPR202WQ08993 238 aa0.77□□□□□ -2.29
RTR1YER139C YPR013CQ12145 317 aa0.77□□□□□ -2.29
RTR1YER139C EFG1Q3E705 233 aaKnown RBP0.77□□□□□ -2.29
RTR1YER139C YOR1P53049 1477 aa0.77□□□□□ -2.29
RTR1YER139C ATP5P09457 212 aa0.76□□□□□ -2.29
RTR1YER139C RPL30P14120 105 aaKnown RBP0.76□□□□□ -2.29
RTR1YER139C YCR023CP25351 611 aa0.76□□□□□ -2.29
RTR1YER139C SFK1P35735 353 aa0.76□□□□□ -2.29
RTR1YER139C YEL028WP39989 153 aa0.76□□□□□ -2.29
RTR1YER139C DLS1P40366 167 aa0.76□□□□□ -2.29
RTR1YER139C MOB1P40484 314 aa0.76□□□□□ -2.29
RTR1YER139C YJR015WP47090 510 aa0.76□□□□□ -2.29
RTR1YER139C HSK3P69852 69 aa0.76□□□□□ -2.29
RTR1YER139C MET31Q03081 177 aa0.76□□□□□ -2.29
RTR1YER139C GAL83Q04739 417 aa0.76□□□□□ -2.29
RTR1YER139C RRT7Q07829 113 aa0.76□□□□□ -2.29
RTR1YER139C UIP4Q08926 304 aa0.76□□□□□ -2.29
RTR1YER139C DAS2Q12084 232 aa0.76□□□□□ -2.29
RTR1YER139C UBR2Q07963 1872 aa0.75□□□□□ -2.29
RTR1YER139C TAF2P23255 1407 aa0.75□□□□□ -2.29
RTR1YER139C MSB2P32334 1306 aa0.75□□□□□ -2.29
RTR1YER139C QCR8P08525 94 aa0.75□□□□□ -2.29
RTR1YER139C SEC11P15367 167 aa0.75□□□□□ -2.29
RTR1YER139C CSH1P38287 376 aa0.75□□□□□ -2.29
RTR1YER139C SLM6P38343 150 aa0.75□□□□□ -2.29
RTR1YER139C HTD2P38790 280 aaKnown RBP0.75□□□□□ -2.29
RTR1YER139C MOG1P47123 218 aa0.75□□□□□ -2.29
RTR1YER139C KNH1P50112 268 aa0.75□□□□□ -2.29
RTR1YER139C SOL1P50278 321 aa0.75□□□□□ -2.29
RTR1YER139C YGR042WP53227 271 aa0.75□□□□□ -2.29
RTR1YER139C MPC3P53311 146 aa0.75□□□□□ -2.29
RTR1YER139C HHO1P53551 258 aa0.75□□□□□ -2.29
RTR1YER139C POP3P53833 195 aaPredicted RBP0.75□□□□□ -2.29
RTR1YER139C YNL033WP53964 284 aa0.75□□□□□ -2.29
RTR1YER139C ATP19P81451 68 aa0.75□□□□□ -2.29
RTR1YER139C YDR366CP87287 132 aa0.75□□□□□ -2.29
Retrieved 100 of 5,963 RNA–protein pairs in 29.8 ms