RNA–Protein interactions for RNA: YEL012W

UBC8, Transcript of Ubiquitin-conjugating enzyme that regulates gluconeogenesis, yeast

Gene UBC8, Length 657 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC8	YEL012W	MIG3	P39943	394 aa		3.15	□□□□□ -1.91
UBC8	YEL012W	CAB4	P53332	305 aa		3.15	□□□□□ -1.91
UBC8	YEL012W	YDR274C	P87283	123 aa		3.15	□□□□□ -1.91
UBC8	YEL012W	TSA2	Q04120	196 aa		3.15	□□□□□ -1.91
UBC8	YEL012W	TAR1	Q8TGM6	124 aa		3.15	□□□□□ -1.91
UBC8	YEL012W	RPS18A	P0CX55	146 aa	Known RBP	3.14	□□□□□ -1.91
UBC8	YEL012W	RPS18B	P0CX56	146 aa	Predicted RBP	3.14	□□□□□ -1.91
UBC8	YEL012W	PRE7	P23724	241 aa	Known RBP	3.14	□□□□□ -1.91
UBC8	YEL012W	YCR101C	P25607	182 aa		3.14	□□□□□ -1.91
UBC8	YEL012W	RPB7	P34087	171 aa		3.14	□□□□□ -1.91
UBC8	YEL012W	UTP30	P36144	274 aa	Known RBP	3.14	□□□□□ -1.91
UBC8	YEL012W	ECM33	P38248	429 aa	Known RBP	3.14	□□□□□ -1.91
UBC8	YEL012W	PCL7	P40186	285 aa		3.14	□□□□□ -1.91
UBC8	YEL012W	LOC1	P43586	204 aa	Predicted RBP	3.14	□□□□□ -1.91
UBC8	YEL012W	GPI14	P47088	403 aa	Known RBP	3.14	□□□□□ -1.91
UBC8	YEL012W	BXI1	P48558	297 aa		3.14	□□□□□ -1.91
UBC8	YEL012W	RDS3	Q06835	107 aa	Predicted RBP	3.14	□□□□□ -1.91
UBC8	YEL012W	DCP1	Q12517	231 aa	Predicted RBP	3.14	□□□□□ -1.91
UBC8	YEL012W	HTZ1	Q12692	134 aa	Known RBP	3.14	□□□□□ -1.91
UBC8	YEL012W	RPL16A	P26784	199 aa	Known RBP	3.13	□□□□□ -1.91
UBC8	YEL012W	ARO7	P32178	256 aa		3.13	□□□□□ -1.91
UBC8	YEL012W	SPS18	P32572	300 aa		3.13	□□□□□ -1.91
UBC8	YEL012W	YEL045C	P32616	141 aa		3.13	□□□□□ -1.91
UBC8	YEL012W	MRPL38	P35996	138 aa	Predicted RBP	3.13	□□□□□ -1.91
UBC8	YEL012W	YKL075C	P36083	450 aa		3.13	□□□□□ -1.91
UBC8	YEL012W	IKI1	P38874	309 aa		3.13	□□□□□ -1.91
UBC8	YEL012W	OXA1	P39952	402 aa		3.13	□□□□□ -1.91
UBC8	YEL012W	YER137C	P40083	148 aa	Known RBP	3.13	□□□□□ -1.91
UBC8	YEL012W	COX15	P40086	486 aa		3.13	□□□□□ -1.91
UBC8	YEL012W	LPP1	Q04396	274 aa		3.13	□□□□□ -1.91
UBC8	YEL012W	ODC2	Q99297	307 aa		3.13	□□□□□ -1.91
UBC8	YEL012W	UBA3	Q99344	299 aa		3.13	□□□□□ -1.91
UBC8	YEL012W	YEL009C-A	A0A023PZF2	135 aa		3.12	□□□□□ -1.91
UBC8	YEL012W	RPL9A	P05738	191 aa	Known RBP	3.12	□□□□□ -1.91
UBC8	YEL012W	RPL23A	P0CX41	137 aa	Known RBP	3.12	□□□□□ -1.91
UBC8	YEL012W	RPL23B	P0CX42	137 aa	Known RBP	3.12	□□□□□ -1.91
UBC8	YEL012W	LSM12	P38828	187 aa	Known RBP	3.12	□□□□□ -1.91
UBC8	YEL012W	NVJ1	P38881	321 aa		3.12	□□□□□ -1.91
UBC8	YEL012W	PRE5	P40302	234 aa	Known RBP	3.12	□□□□□ -1.91
UBC8	YEL012W	SOL1	P50278	321 aa		3.12	□□□□□ -1.91
UBC8	YEL012W	RIB4	P50861	169 aa	Predicted RBP	3.12	□□□□□ -1.91
UBC8	YEL012W	SLX9	P53251	210 aa	Predicted RBP	3.12	□□□□□ -1.91
UBC8	YEL012W	ALG9	P53868	555 aa	Known RBP	3.12	□□□□□ -1.91
UBC8	YEL012W	ERV25	P54837	211 aa	Known RBP	3.12	□□□□□ -1.91
UBC8	YEL012W	CTF19	Q02732	369 aa		3.12	□□□□□ -1.91
UBC8	YEL012W	MAK3	Q03503	176 aa		3.12	□□□□□ -1.91
UBC8	YEL012W	CAB5	Q03941	241 aa		3.12	□□□□□ -1.91
UBC8	YEL012W	MHR1	Q06630	226 aa		3.12	□□□□□ -1.91
UBC8	YEL012W	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	3.12	□□□□□ -1.91	not detected
UBC8	YEL012W	YPR013C	Q12145	317 aa		3.12	□□□□□ -1.91
UBC8	YEL012W	ATP16	Q12165	160 aa		3.12	□□□□□ -1.91
UBC8	YEL012W	DGK1	Q12382	290 aa		3.12	□□□□□ -1.91
UBC8	YEL012W	SAL1	D6W196	494 aa		3.11	□□□□□ -1.91
UBC8	YEL012W	HTB1	P02293	131 aa	Known RBP	3.11	□□□□□ -1.91
UBC8	YEL012W	RPL18A	P0CX49	186 aa	Known RBP	3.11	□□□□□ -1.91
UBC8	YEL012W	RPL18B	P0CX50	186 aa	Known RBP	3.11	□□□□□ -1.91
UBC8	YEL012W	SEN2	P16658	377 aa		3.11	□□□□□ -1.91
UBC8	YEL012W	RFA3	P26755	122 aa	Known RBP	3.11	□□□□□ -1.91
UBC8	YEL012W	YKL162C	P36052	402 aa		3.11	□□□□□ -1.91
UBC8	YEL012W	MPC2	P38857	129 aa		3.11	□□□□□ -1.91
UBC8	YEL012W	RTT105	P40063	208 aa		3.11	□□□□□ -1.91
UBC8	YEL012W	CDC40	P40968	455 aa	Predicted RBP	3.11	□□□□□ -1.91
UBC8	YEL012W	YGR042W	P53227	271 aa		3.11	□□□□□ -1.91
UBC8	YEL012W	HNT1	Q04344	158 aa	Known RBP	3.11	□□□□□ -1.91
UBC8	YEL012W	YOR292C	Q08743	309 aa		3.11	□□□□□ -1.91
UBC8	YEL012W	PAA1	Q12447	191 aa	Known RBP	3.11	□□□□□ -1.91
UBC8	YEL012W	ROX3	P25046	220 aa		3.1	□□□□□ -1.91
UBC8	YEL012W	AHC2	P25649	128 aa		3.1	□□□□□ -1.91
UBC8	YEL012W	SHE2	P36068	246 aa	Known RBP RIP-Chip data	3.1	□□□□□ -1.91	not detected
UBC8	YEL012W	BMT5	P40493	336 aa		3.1	□□□□□ -1.91
UBC8	YEL012W	OTU1	P43558	301 aa		3.1	□□□□□ -1.91
UBC8	YEL012W	DIE2	P50076	525 aa		3.1	□□□□□ -1.91
UBC8	YEL012W	CPD1	P53314	239 aa		3.1	□□□□□ -1.91
UBC8	YEL012W	GIS2	P53849	153 aa	Known RBP RIP-Chip data	3.1	□□□□□ -1.91	not detected
UBC8	YEL012W	TRM10	Q12400	293 aa		3.1	□□□□□ -1.91
UBC8	YEL012W	HUG1	Q6Q5K6	68 aa		3.1	□□□□□ -1.91
UBC8	YEL012W	HIS3	P06633	220 aa		3.09	□□□□□ -1.91
UBC8	YEL012W	PET494	P07390	489 aa	Predicted RBP	3.09	□□□□□ -1.91
UBC8	YEL012W	FUS3	P16892	353 aa	Known RBP	3.09	□□□□□ -1.91
UBC8	YEL012W	MIR1	P23641	311 aa	Known RBP	3.09	□□□□□ -1.91
UBC8	YEL012W	ACP1	P32463	125 aa		3.09	□□□□□ -1.91
UBC8	YEL012W	HYM1	P32464	399 aa		3.09	□□□□□ -1.91
UBC8	YEL012W	YPT31	P38555	223 aa	Known RBP	3.09	□□□□□ -1.91
UBC8	YEL012W	BFR1	P38934	470 aa	Known RBP RIP-Chip data	3.09	□□□□□ -1.91	RIP-Chip
UBC8	YEL012W	LST8	P41318	303 aa		3.09	□□□□□ -1.91
UBC8	YEL012W	VHT1	P53241	593 aa		3.09	□□□□□ -1.91
UBC8	YEL012W	YGR219W	P53307	113 aa		3.09	□□□□□ -1.91
UBC8	YEL012W	FSH2	Q05015	223 aa		3.09	□□□□□ -1.91
UBC8	YEL012W	PEX10	Q05568	337 aa		3.09	□□□□□ -1.91
UBC8	YEL012W	ATG41	Q12048	136 aa		3.09	□□□□□ -1.91
UBC8	YEL012W	YPR108W-A	Q3E7B3	70 aa		3.09	□□□□□ -1.91
UBC8	YEL012W	COX2	P00410	251 aa		3.08	□□□□□ -1.92
UBC8	YEL012W	SOD1	P00445	154 aa	Known RBP	3.08	□□□□□ -1.92
UBC8	YEL012W	NOP1	P15646	327 aa	Known RBP	3.08	□□□□□ -1.92
UBC8	YEL012W	URA6	P15700	204 aa		3.08	□□□□□ -1.92
UBC8	YEL012W	GRX2	P17695	143 aa	Known RBP	3.08	□□□□□ -1.92
UBC8	YEL012W	CDC50	P25656	391 aa		3.08	□□□□□ -1.92
UBC8	YEL012W	PDC2	P32896	925 aa		3.08	□□□□□ -1.92
UBC8	YEL012W	SNU13	P39990	126 aa	Known RBP	3.08	□□□□□ -1.92
UBC8	YEL012W	SYS1	P41544	203 aa		3.08	□□□□□ -1.92

Retrieved 100 of 5,963 RNA–protein pairs in 15.9 ms