RNA–Protein interactions for RNA: YBR165W

UBS1, Transcript of Ubiquitin-conjugating enzyme suppressor that regulates Cdc34p, yeast

Gene UBS1, Length 834 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBS1	YBR165W	CBF1	P17106	351 aa		0.94	□□□□□ -2.26
UBS1	YBR165W	RPB4	P20433	221 aa	Predicted RBP	0.94	□□□□□ -2.26
UBS1	YBR165W	FIT1	Q04433	528 aa		0.94	□□□□□ -2.26
UBS1	YBR165W	FYV12	Q08559	129 aa		0.94	□□□□□ -2.26
UBS1	YBR165W	DAS2	Q12084	232 aa		0.94	□□□□□ -2.26
UBS1	YBR165W	IGO2	Q9P305	131 aa		0.94	□□□□□ -2.26
UBS1	YBR165W	YIL102C	P40488	101 aa		0.93	□□□□□ -2.26
UBS1	YBR165W	ATP20	Q12233	115 aa		0.93	□□□□□ -2.26
UBS1	YBR165W	MATALPHA2	P0CY08	210 aa		0.92	□□□□□ -2.26
UBS1	YBR165W	HMLALPHA2	P0CY09	210 aa		0.92	□□□□□ -2.26
UBS1	YBR165W	DCV1	P43595	202 aa		0.92	□□□□□ -2.26
UBS1	YBR165W	PIR1	Q03178	341 aa		0.92	□□□□□ -2.26
UBS1	YBR165W	YHP1	Q04116	353 aa		0.92	□□□□□ -2.26
UBS1	YBR165W	YOR342C	Q12182	319 aa		0.92	□□□□□ -2.26
UBS1	YBR165W	YLR412C-A	Q3E742	68 aa		0.92	□□□□□ -2.26
UBS1	YBR165W	NSA2	P40078	261 aa	Known RBP	0.91	□□□□□ -2.26
UBS1	YBR165W	NRK1	P53915	240 aa		0.91	□□□□□ -2.26
UBS1	YBR165W	PRP8	P33334	2413 aa	Known RBP	0.9	□□□□□ -2.26
UBS1	YBR165W	MAK31	P23059	88 aa		0.9	□□□□□ -2.27
UBS1	YBR165W	NTG1	P31378	399 aa		0.9	□□□□□ -2.27
UBS1	YBR165W	NSG1	P38837	291 aa		0.9	□□□□□ -2.27
UBS1	YBR165W	NSE4	P43124	402 aa		0.9	□□□□□ -2.27
UBS1	YBR165W	SBH2	P52871	88 aa		0.9	□□□□□ -2.27
UBS1	YBR165W	PGA1	P53896	198 aa		0.9	□□□□□ -2.27
UBS1	YBR165W	UPS1	Q05776	175 aa		0.9	□□□□□ -2.27
UBS1	YBR165W	JIP3	O13555	125 aa		0.89	□□□□□ -2.27
UBS1	YBR165W	RTC4	P53850	401 aa		0.89	□□□□□ -2.27
UBS1	YBR165W	TIM11	P81449	96 aa	Predicted RBP	0.89	□□□□□ -2.27
UBS1	YBR165W	DGK1	Q12382	290 aa		0.89	□□□□□ -2.27
UBS1	YBR165W	YMR030W-A	Q3E760	96 aa		0.89	□□□□□ -2.27
UBS1	YBR165W	RRT1	P38192	103 aa		0.88	□□□□□ -2.27
UBS1	YBR165W	YAR064W	P39563	99 aa		0.88	□□□□□ -2.27
UBS1	YBR165W	DML1	Q03652	475 aa		0.88	□□□□□ -2.27
UBS1	YBR165W	ELP6	Q04868	273 aa		0.88	□□□□□ -2.27
UBS1	YBR165W	YOL024W	Q08172	172 aa		0.88	□□□□□ -2.27
UBS1	YBR165W	ADE1	P27616	306 aa		0.87	□□□□□ -2.27
UBS1	YBR165W	YDL085C-A	Q3E7B7	68 aa	Known RBP	0.87	□□□□□ -2.27
UBS1	YBR165W	YPR014C	Q6B0W2	109 aa		0.86	□□□□□ -2.27
UBS1	YBR165W	YKT6	P36015	200 aa	Known RBP	0.85	□□□□□ -2.27
UBS1	YBR165W	CCS1	P40202	249 aa	Known RBP	0.85	□□□□□ -2.27
UBS1	YBR165W	YLR422W	Q06409	1932 aa		0.85	□□□□□ -2.27
UBS1	YBR165W	YJR015W	P47090	510 aa		0.84	□□□□□ -2.27
UBS1	YBR165W	ATG41	Q12048	136 aa		0.84	□□□□□ -2.27
UBS1	YBR165W	SBH1	P52870	82 aa		0.83	□□□□□ -2.28
UBS1	YBR165W	GRX5	Q02784	150 aa		0.83	□□□□□ -2.28
UBS1	YBR165W	MPD1	Q12404	318 aa	Known RBP	0.83	□□□□□ -2.28
UBS1	YBR165W	YOR381W-A	Q3E804	55 aa		0.83	□□□□□ -2.28
UBS1	YBR165W	YRA2	P36036	203 aa	Known RBP RIP-Chip data	0.82	□□□□□ -2.28	not detected
UBS1	YBR165W	GAL83	Q04739	417 aa		0.82	□□□□□ -2.28
UBS1	YBR165W	DUR1,2	P32528	1835 aa	Known RBP	0.81	□□□□□ -2.28
UBS1	YBR165W	TAH1	P25638	111 aa	Predicted RBP	0.81	□□□□□ -2.28
UBS1	YBR165W	YKR070W	P36151	352 aa	Known RBP	0.81	□□□□□ -2.28
UBS1	YBR165W	SHB17	P36136	271 aa	Known RBP	0.8	□□□□□ -2.28
UBS1	YBR165W	YDC1	Q02896	317 aa		0.8	□□□□□ -2.28
UBS1	YBR165W	AIM34	Q03673	198 aa		0.8	□□□□□ -2.28
UBS1	YBR165W	NOC4	Q06512	552 aa	Predicted RBP	0.8	□□□□□ -2.28
UBS1	YBR165W	YGL230C	P53074	147 aa		0.79	□□□□□ -2.28
UBS1	YBR165W	KEI1	Q06346	221 aa		0.79	□□□□□ -2.28
UBS1	YBR165W	HSP30	P25619	332 aa		0.78	□□□□□ -2.28
UBS1	YBR165W	FMP32	P43557	207 aa		0.78	□□□□□ -2.28
UBS1	YBR165W	TRX3	P25372	127 aa		0.77	□□□□□ -2.29
UBS1	YBR165W	AHC2	P25649	128 aa		0.77	□□□□□ -2.29
UBS1	YBR165W	YNL200C	P40165	246 aa	Known RBP	0.77	□□□□□ -2.29
UBS1	YBR165W	TMA23	Q03525	211 aa		0.77	□□□□□ -2.29
UBS1	YBR165W	RIM9	Q04734	239 aa		0.77	□□□□□ -2.29
UBS1	YBR165W	CAF4	P36130	643 aa		0.76	□□□□□ -2.29
UBS1	YBR165W	FYV4	P38783	130 aa	Predicted RBP	0.76	□□□□□ -2.29
UBS1	YBR165W	HHT1	P61830	136 aa		0.76	□□□□□ -2.29
UBS1	YBR165W	HFA1	P32874	2273 aa		0.75	□□□□□ -2.29
UBS1	YBR165W	CGR1	P53188	120 aa		0.75	□□□□□ -2.29
UBS1	YBR165W	SHH4	Q06236	168 aa		0.74	□□□□□ -2.29
UBS1	YBR165W	SEC14	P24280	304 aa	Known RBP	0.73	□□□□□ -2.29
UBS1	YBR165W	YKL102C	P34249	101 aa		0.73	□□□□□ -2.29
UBS1	YBR165W	RFC2	P40348	353 aa		0.73	□□□□□ -2.29
UBS1	YBR165W	VPS28	Q02767	242 aa		0.73	□□□□□ -2.29
UBS1	YBR165W	GPI17	Q04080	534 aa		0.73	□□□□□ -2.29
UBS1	YBR165W	YOL013W-A	P0C272	63 aa	Predicted RBP	0.72	□□□□□ -2.29
UBS1	YBR165W	PRE1	P22141	198 aa	Known RBP	0.72	□□□□□ -2.29
UBS1	YBR165W	YCR001W	P25347	104 aa		0.72	□□□□□ -2.29
UBS1	YBR165W	CPR5	P35176	225 aa		0.72	□□□□□ -2.29
UBS1	YBR165W	YKR005C	Q02203	525 aa		0.72	□□□□□ -2.29
UBS1	YBR165W	AVO2	Q04749	426 aa		0.72	□□□□□ -2.29
UBS1	YBR165W	YPR127W	Q06494	345 aa		0.72	□□□□□ -2.29
UBS1	YBR165W	YOR214C	Q12282	236 aa		0.72	□□□□□ -2.29
UBS1	YBR165W	GCY1	P14065	312 aa	Known RBP RIP-Chip data	0.71	□□□□□ -2.3	RIP-Chip
UBS1	YBR165W	PAC10	P48363	199 aa		0.71	□□□□□ -2.3
UBS1	YBR165W	CWC21	Q03375	135 aa	Known RBP	0.71	□□□□□ -2.3
UBS1	YBR165W	GRX8	Q05926	109 aa		0.71	□□□□□ -2.3
UBS1	YBR165W	RAD9	P14737	1309 aa		0.7	□□□□□ -2.3
UBS1	YBR165W	SHG1	P38337	142 aa		0.7	□□□□□ -2.3
UBS1	YBR165W	YKR041W	P36134	250 aa		0.69	□□□□□ -2.3
UBS1	YBR165W	POG1	P40473	351 aa		0.68	□□□□□ -2.3
UBS1	YBR165W	TTI2	P47168	421 aa		0.68	□□□□□ -2.3
UBS1	YBR165W	FCY1	Q12178	158 aa		0.68	□□□□□ -2.3
UBS1	YBR165W	YEL073C	P39974	107 aa		0.67	□□□□□ -2.3
UBS1	YBR165W	HHY1	P39982	102 aa		0.67	□□□□□ -2.3
UBS1	YBR165W	MOB1	P40484	314 aa		0.67	□□□□□ -2.3
UBS1	YBR165W	HPT1	Q04178	221 aa	Known RBP	0.67	□□□□□ -2.3
UBS1	YBR165W	BRX1	Q08235	291 aa	Known RBP	0.67	□□□□□ -2.3
UBS1	YBR165W	KIN28	P06242	306 aa		0.66	□□□□□ -2.3

Retrieved 100 of 5,963 RNA–protein pairs in 52.6 ms