RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 TDRD9Q8NDG6 1382 aaKnown RBP5.05□□□□□ -1.6
VPS29-202ENST00000447578 AKR1B10O60218 316 aa5.05□□□□□ -1.6
VPS29-202ENST00000447578 PQBP1O60828 265 aaKnown RBP5.05□□□□□ -1.6
VPS29-202ENST00000447578 DTNBO60941 627 aa5.05□□□□□ -1.6
VPS29-202ENST00000447578 HRGP04196 525 aa5.05□□□□□ -1.6
VPS29-202ENST00000447578 CENPBP07199 599 aaPredicted RBP5.05□□□□□ -1.6
VPS29-202ENST00000447578 FXR1P51114 621 aaKnown RBP eCLIP5.05□□□□□ -1.6
VPS29-202ENST00000447578 ELLP55199 621 aaPredicted RBP5.05□□□□□ -1.6
VPS29-202ENST00000447578 SIM1P81133 766 aaPredicted RBP5.05□□□□□ -1.6
VPS29-202ENST00000447578 OCA2Q04671 838 aa5.05□□□□□ -1.6
VPS29-202ENST00000447578 RALBP1Q15311 655 aa5.05□□□□□ -1.6
VPS29-202ENST00000447578 MST1LQ2TV78 715 aa5.05□□□□□ -1.6
VPS29-202ENST00000447578 PGS1Q32NB8 556 aa5.05□□□□□ -1.6
VPS29-202ENST00000447578 FAM83BQ5T0W9 1011 aa5.05□□□□□ -1.6
VPS29-202ENST00000447578 DARS2Q6PI48 645 aaKnown RBP5.05□□□□□ -1.6
VPS29-202ENST00000447578 Q6ZVL8 140 aa5.05□□□□□ -1.6
VPS29-202ENST00000447578 OVCH2Q7RTZ1 564 aa5.05□□□□□ -1.6
VPS29-202ENST00000447578 PRR18Q8N4B5 295 aa5.05□□□□□ -1.6
VPS29-202ENST00000447578 CAGE1Q8TC20 777 aa5.05□□□□□ -1.6
VPS29-202ENST00000447578 PPM1EQ8WY54 764 aa5.05□□□□□ -1.6
VPS29-202ENST00000447578 RIN2Q8WYP3 895 aaPredicted RBP5.05□□□□□ -1.6
VPS29-202ENST00000447578 IFT122Q9HBG6 1241 aa5.05□□□□□ -1.6
VPS29-202ENST00000447578 KIAA1586Q9HCI6 787 aa5.05□□□□□ -1.6
VPS29-202ENST00000447578 DMTF1Q9Y222 760 aa5.05□□□□□ -1.6
VPS29-202ENST00000447578 AATKQ6ZMQ8 1374 aa5.04□□□□□ -1.6
VPS29-202ENST00000447578 PCF11O94913 1555 aaKnown RBP5.04□□□□□ -1.6
VPS29-202ENST00000447578 EFCAB5A4FU69 1503 aa5.04□□□□□ -1.6
VPS29-202ENST00000447578 H3BML4 177 aa5.04□□□□□ -1.6
VPS29-202ENST00000447578 INO80B-WBP1J3KQ70 363 aa5.04□□□□□ -1.6
VPS29-202ENST00000447578 NPHP1O15259 732 aa5.04□□□□□ -1.6
VPS29-202ENST00000447578 PJA2O43164 708 aa5.04□□□□□ -1.6
VPS29-202ENST00000447578 TCEA3O75764 348 aa5.04□□□□□ -1.6
VPS29-202ENST00000447578 TUSC2O75896 110 aa5.04□□□□□ -1.6
VPS29-202ENST00000447578 MATN4O95460 622 aa5.04□□□□□ -1.6
VPS29-202ENST00000447578 IGLV2-14P01704 120 aa5.04□□□□□ -1.6
VPS29-202ENST00000447578 ALOX15P16050 662 aaPredicted RBP5.04□□□□□ -1.6
VPS29-202ENST00000447578 FDXRP22570 491 aa5.04□□□□□ -1.6
VPS29-202ENST00000447578 MXRA7P84157 204 aa5.04□□□□□ -1.6
VPS29-202ENST00000447578 CHAF1AQ13111 956 aaPredicted RBP5.04□□□□□ -1.6
VPS29-202ENST00000447578 ZNF169Q14929 603 aaPredicted RBP5.04□□□□□ -1.6
VPS29-202ENST00000447578 SPDYE7PQ495Y7 208 aa5.04□□□□□ -1.6
VPS29-202ENST00000447578 INO80DQ53TQ3 878 aaPredicted RBP5.04□□□□□ -1.6
VPS29-202ENST00000447578 ZNF572Q7Z3I7 529 aaPredicted RBP5.04□□□□□ -1.6
VPS29-202ENST00000447578 DENND1CQ8IV53 801 aa5.04□□□□□ -1.6
VPS29-202ENST00000447578 STON2Q8WXE9 905 aa5.04□□□□□ -1.6
VPS29-202ENST00000447578 RNF31Q96EP0 1072 aa5.04□□□□□ -1.6
VPS29-202ENST00000447578 ACE2Q9BYF1 805 aaPredicted RBP5.04□□□□□ -1.6
VPS29-202ENST00000447578 INO80BQ9C086 356 aaPredicted RBP5.04□□□□□ -1.6
VPS29-202ENST00000447578 TMEM60Q9H2L4 133 aa5.04□□□□□ -1.6
VPS29-202ENST00000447578 FRMD4BQ9Y2L6 1034 aa5.04□□□□□ -1.6
VPS29-202ENST00000447578 NOX1Q9Y5S8 564 aa5.04□□□□□ -1.6
VPS29-202ENST00000447578 GAPVD1Q14C86 1478 aa5.04□□□□□ -1.6
VPS29-202ENST00000447578 CUL7Q14999 1698 aa5.04□□□□□ -1.6
VPS29-202ENST00000447578 RAB3GAP2Q9H2M9 1393 aa5.04□□□□□ -1.6
VPS29-202ENST00000447578 A0A1B0GTW7 788 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 FAM227AF5H4B4 570 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 UBXN7O94888 489 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 PRSS23O95084 383 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 SNRPA1P09661 255 aaKnown RBP5.03□□□□□ -1.6
VPS29-202ENST00000447578 SETSIPP0DME0 302 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 CDK4P11802 303 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 SLC5A1P13866 664 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 SLC6A2P23975 617 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 FAM193AP78312 1265 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 STK3Q13188 491 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 RAPGEF1Q13905 1077 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 LONRF1Q17RB8 773 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 ANO4Q32M45 955 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 ANO1Q5XXA6 986 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 AFMIDQ63HM1 303 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 ARMC6Q6NXE6 501 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 ERAP2Q6P179 960 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 Q6ZNX1 250 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 ARHGEF25Q86VW2 580 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 ZNF384Q8TF68 577 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 CCDC138Q96M89 665 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 MRI1Q9BV20 369 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 DUSP26Q9BV47 211 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 LIMCH1Q9UPQ0 1083 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 PCDHGB6Q9Y5F9 930 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 CASKIN1Q8WXD9 1431 aa5.03□□□□□ -1.6
VPS29-202ENST00000447578 AQRO60306 1485 aaKnown RBP eCLIP5.02□□□□□ -1.612e-9■■■■■ 38.2
VPS29-202ENST00000447578 FYCO1Q9BQS8 1478 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 CCDC154A6NI56 674 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 LRRC3CA6NJW4 275 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 HMGB1P1B2RPK0 211 aaPredicted RBP5.02□□□□□ -1.61
VPS29-202ENST00000447578 PHF2O75151 1096 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 WDHD1O75717 1129 aaPredicted RBP5.02□□□□□ -1.61
VPS29-202ENST00000447578 C1QL1O75973 258 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 C1RP00736 705 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 ALDH2P05091 517 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 ZKSCAN1P17029 563 aaPredicted RBP5.02□□□□□ -1.61
VPS29-202ENST00000447578 FGFR4P22455 802 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 TRAPPC10P48553 1259 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 PPM1FP49593 454 aaPredicted RBP5.02□□□□□ -1.61
VPS29-202ENST00000447578 RARRES1P49788 294 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 ALDH5A1P51649 535 aaPredicted RBP5.02□□□□□ -1.61
VPS29-202ENST00000447578 CXADRP78310 365 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 SEMA5AQ13591 1074 aa5.02□□□□□ -1.61
VPS29-202ENST00000447578 RNF220Q5VTB9 566 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms