RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeastyeast

Gene VPS29, Length 849 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS29YHR012W YOR283WQ12040 230 aaKnown RBP3.81□□□□□ -1.8
VPS29YHR012W ATG31Q12421 196 aa3.81□□□□□ -1.8
VPS29YHR012W TRP4P07285 380 aaPredicted RBP3.8□□□□□ -1.8
VPS29YHR012W STF2P16965 84 aa3.8□□□□□ -1.8
VPS29YHR012W MDM10P18409 493 aa3.8□□□□□ -1.8
VPS29YHR012W ERV1P27882 189 aa3.8□□□□□ -1.8
VPS29YHR012W TRR1P29509 319 aaKnown RBP3.8□□□□□ -1.8
VPS29YHR012W PPQ1P32945 549 aa3.8□□□□□ -1.8
VPS29YHR012W MRPL38P35996 138 aaPredicted RBP3.8□□□□□ -1.8
VPS29YHR012W HPA3P39979 161 aa3.8□□□□□ -1.8
VPS29YHR012W SIT1P39980 628 aa3.8□□□□□ -1.8
VPS29YHR012W OTU1P43558 301 aa3.8□□□□□ -1.8
VPS29YHR012W ORM1P53224 222 aa3.8□□□□□ -1.8
VPS29YHR012W SSU72P53538 206 aaPredicted RBP3.8□□□□□ -1.8
VPS29YHR012W YDR415CQ04033 374 aaPredicted RBP3.8□□□□□ -1.8
VPS29YHR012W GRH1Q04410 372 aaKnown RBP3.8□□□□□ -1.8
VPS29YHR012W KEI1Q06346 221 aa3.8□□□□□ -1.8
VPS29YHR012W AEP3Q12089 606 aa3.8□□□□□ -1.8
VPS29YHR012W INP53Q12271 1107 aa3.8□□□□□ -1.8
VPS29YHR012W BOL1Q3E793 110 aa3.8□□□□□ -1.8
VPS29YHR012W SEN2P16658 377 aa3.79□□□□□ -1.8
VPS29YHR012W SAR1P20606 190 aaKnown RBP3.79□□□□□ -1.8
VPS29YHR012W RNP1P32385 249 aa3.79□□□□□ -1.8
VPS29YHR012W YKR045CP36138 183 aa3.79□□□□□ -1.8
VPS29YHR012W ECM33P38248 429 aaKnown RBP3.79□□□□□ -1.8
VPS29YHR012W YBR242WP38331 238 aa3.79□□□□□ -1.8
VPS29YHR012W LSM12P38828 187 aaKnown RBP3.79□□□□□ -1.8
VPS29YHR012W LSM1P47017 172 aaKnown RBP3.79□□□□□ -1.8
VPS29YHR012W UBP8P50102 471 aa3.79□□□□□ -1.8
VPS29YHR012W YGR219WP53307 113 aa3.79□□□□□ -1.8
VPS29YHR012W ACT1P60010 375 aaKnown RBP3.79□□□□□ -1.8
VPS29YHR012W YML122CQ03207 126 aa3.79□□□□□ -1.8
VPS29YHR012W MSC3Q05812 728 aa3.79□□□□□ -1.8
VPS29YHR012W PAM18Q07914 168 aa3.79□□□□□ -1.8
VPS29YHR012W SCP1Q08873 200 aa3.79□□□□□ -1.8
VPS29YHR012W RAD28Q12021 506 aa3.79□□□□□ -1.8
VPS29YHR012W YJR112W-AQ3E743 109 aa3.79□□□□□ -1.8
VPS29YHR012W SPS2P08459 502 aa3.78□□□□□ -1.8
VPS29YHR012W RPL3P14126 387 aaKnown RBP3.78□□□□□ -1.8
VPS29YHR012W NOP1P15646 327 aaKnown RBP3.78□□□□□ -1.8
VPS29YHR012W CDC23P16522 626 aa3.78□□□□□ -1.8
VPS29YHR012W MIR1P23641 311 aaKnown RBP3.78□□□□□ -1.8
VPS29YHR012W YCP4P25349 247 aaKnown RBP3.78□□□□□ -1.8
VPS29YHR012W NNK1P36003 928 aa3.78□□□□□ -1.8
VPS29YHR012W MRPL27P36526 146 aaPredicted RBP3.78□□□□□ -1.8
VPS29YHR012W MIC12P38341 106 aa3.78□□□□□ -1.8
VPS29YHR012W HTD2P38790 280 aaKnown RBP3.78□□□□□ -1.8
VPS29YHR012W RTC3P38804 111 aaPredicted RBP3.78□□□□□ -1.8
VPS29YHR012W SYG1P40528 902 aa3.78□□□□□ -1.8
VPS29YHR012W CRH1P53301 507 aa3.78□□□□□ -1.8
VPS29YHR012W CPD1P53314 239 aa3.78□□□□□ -1.8
VPS29YHR012W YDR274CP87283 123 aa3.78□□□□□ -1.8
VPS29YHR012W MRPS16Q02608 121 aa3.78□□□□□ -1.8
VPS29YHR012W RRG8Q06109 277 aa3.78□□□□□ -1.8
VPS29YHR012W PBP4Q07362 185 aaKnown RBP3.78□□□□□ -1.8
VPS29YHR012W ENV7Q12003 364 aa3.78□□□□□ -1.8
VPS29YHR012W HTZ1Q12692 134 aaKnown RBP3.78□□□□□ -1.8
VPS29YHR012W HUG1Q6Q5K6 68 aa3.78□□□□□ -1.8
VPS29YHR012W PET20Q99373 253 aa3.78□□□□□ -1.8
VPS29YHR012W CPR4P25334 318 aa3.77□□□□□ -1.81
VPS29YHR012W AGA2P32781 87 aa3.77□□□□□ -1.81
VPS29YHR012W ALK2P32789 676 aaPredicted RBP3.77□□□□□ -1.81
VPS29YHR012W PDC2P32896 925 aa3.77□□□□□ -1.81
VPS29YHR012W YRA2P36036 203 aaKnown RBP RIP-Chip data3.77□□□□□ -1.81not detected
VPS29YHR012W MRPL3P36516 390 aa3.77□□□□□ -1.81
VPS29YHR012W ATP3P38077 311 aaKnown RBP3.77□□□□□ -1.81
VPS29YHR012W PTC7P38797 343 aa3.77□□□□□ -1.81
VPS29YHR012W PEX7P39108 375 aa3.77□□□□□ -1.81
VPS29YHR012W CAT5P41735 233 aa3.77□□□□□ -1.81
VPS29YHR012W WWM1P43582 211 aaKnown RBP3.77□□□□□ -1.81
VPS29YHR012W YPI1P43587 155 aa3.77□□□□□ -1.81
VPS29YHR012W MRPL50P53724 139 aa3.77□□□□□ -1.81
VPS29YHR012W ERV25P54837 211 aaKnown RBP3.77□□□□□ -1.81
VPS29YHR012W PLP1Q04004 230 aa3.77□□□□□ -1.81
VPS29YHR012W SCW10Q04951 389 aa3.77□□□□□ -1.81
VPS29YHR012W COA4Q05809 96 aa3.77□□□□□ -1.81
VPS29YHR012W FMT1P32785 401 aa3.76□□□□□ -1.81
VPS29YHR012W YBR184WP38299 523 aa3.76□□□□□ -1.81
VPS29YHR012W YPT31P38555 223 aaKnown RBP3.76□□□□□ -1.81
VPS29YHR012W YHR122WP38829 231 aa3.76□□□□□ -1.81
VPS29YHR012W BFR1P38934 470 aaKnown RBP RIP-Chip data3.76□□□□□ -1.81 RIP-Chip
VPS29YHR012W AGX1P43567 385 aa3.76□□□□□ -1.81
VPS29YHR012W AIM25P47140 327 aa3.76□□□□□ -1.81
VPS29YHR012W FSH2Q05015 223 aa3.76□□□□□ -1.81
VPS29YHR012W RTT103Q05543 409 aa3.76□□□□□ -1.81
VPS29YHR012W YGL258W-AQ3E740 77 aa3.76□□□□□ -1.81
VPS29YHR012W MDN1Q12019 4910 aaKnown RBP3.76□□□□□ -1.81
VPS29YHR012W NHP6BP11633 99 aaKnown RBP3.75□□□□□ -1.81
VPS29YHR012W AUA1P32450 94 aa3.75□□□□□ -1.81
VPS29YHR012W DOG2P38773 246 aa3.75□□□□□ -1.81
VPS29YHR012W DOG1P38774 246 aa3.75□□□□□ -1.81
VPS29YHR012W LST8P41318 303 aa3.75□□□□□ -1.81
VPS29YHR012W YFR035CP43608 114 aa3.75□□□□□ -1.81
VPS29YHR012W GPG1P53130 126 aa3.75□□□□□ -1.81
VPS29YHR012W ALG13P53178 202 aa3.75□□□□□ -1.81
VPS29YHR012W GTF1P53260 183 aaPredicted RBP3.75□□□□□ -1.81
VPS29YHR012W SMX3P54999 86 aaPredicted RBP3.75□□□□□ -1.81
VPS29YHR012W TRI1Q05024 226 aa3.75□□□□□ -1.81
VPS29YHR012W YOR385WQ08909 290 aa3.75□□□□□ -1.81
VPS29YHR012W YPS1P32329 569 aa3.74□□□□□ -1.81
Retrieved 100 of 5,963 RNA–protein pairs in 131.2 ms