RNA–Protein interactions for RNA: snR78

snR78, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR78, Length 87 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR78	snR78	CDC36	P06100	191 aa	Predicted RBP	0.64	□□□□□ -2.31
snR78	snR78	YCR016W	P25617	290 aa	Known RBP	0.64	□□□□□ -2.31
snR78	snR78	ECM4	P36156	370 aa		0.64	□□□□□ -2.31
snR78	snR78	ALG13	P53178	202 aa		0.64	□□□□□ -2.31
snR78	snR78	YLR283W	Q05867	314 aa		0.64	□□□□□ -2.31
snR78	snR78	YFR032C-B	Q8TGU2	87 aa		0.64	□□□□□ -2.31
snR78	snR78	YIL177C	P40434	1758 aa		0.64	□□□□□ -2.31
snR78	snR78	YJL225C	P40889	1758 aa		0.64	□□□□□ -2.31
snR78	snR78	RPB3	P16370	318 aa	Known RBP	0.63	□□□□□ -2.31
snR78	snR78	ATP15	P21306	62 aa		0.63	□□□□□ -2.31
snR78	snR78	MGM101	P32787	269 aa	Known RBP	0.63	□□□□□ -2.31
snR78	snR78	YEA4	P40004	342 aa		0.63	□□□□□ -2.31
snR78	snR78	MIC26	P50087	233 aa		0.63	□□□□□ -2.31
snR78	snR78	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	0.63	□□□□□ -2.31	not detected
snR78	snR78	MATALPHA1	P0CY06	175 aa		0.62	□□□□□ -2.31
snR78	snR78	HMLALPHA1	P0CY07	175 aa		0.62	□□□□□ -2.31
snR78	snR78	DIG2	Q03373	323 aa	Known RBP	0.62	□□□□□ -2.31
snR78	snR78	YEL008W	P40001	126 aa		0.61	□□□□□ -2.31
snR78	snR78	YGR050C	P53231	118 aa		0.61	□□□□□ -2.31
snR78	snR78	PET117	Q02771	107 aa		0.61	□□□□□ -2.31
snR78	snR78	RRN5	Q02983	363 aa		0.61	□□□□□ -2.31
snR78	snR78	SPO13	P23624	291 aa		0.6	□□□□□ -2.31
snR78	snR78	YHR214C-E	Q8TGK0	99 aa		0.6	□□□□□ -2.31
snR78	snR78	FAS1	P07149	2051 aa	Known RBP	0.6	□□□□□ -2.31
snR78	snR78	YLR460C	P54007	376 aa		0.59	□□□□□ -2.31
snR78	snR78	HPA3	P39979	161 aa		0.58	□□□□□ -2.32
snR78	snR78	MPC3	P53311	146 aa		0.58	□□□□□ -2.32
snR78	snR78	DGA1	Q08650	418 aa		0.58	□□□□□ -2.32
snR78	snR78	UGX2	P32772	223 aa		0.57	□□□□□ -2.32
snR78	snR78	MSN4	P33749	630 aa		0.57	□□□□□ -2.32
snR78	snR78	COA3	Q3E7B2	85 aa		0.57	□□□□□ -2.32
snR78	snR78	CFT1	Q06632	1357 aa	Known RBP	0.57	□□□□□ -2.32
snR78	snR78	RPL28	P02406	149 aa	Known RBP	0.56	□□□□□ -2.32
snR78	snR78	CKS1	P20486	150 aa	Known RBP	0.56	□□□□□ -2.32
snR78	snR78	SEC4	P07560	215 aa	Known RBP	0.54	□□□□□ -2.32
snR78	snR78	POR1	P04840	283 aa	Known RBP	0.53	□□□□□ -2.32
snR78	snR78	GCN3	P14741	305 aa		0.53	□□□□□ -2.32
snR78	snR78	YMR31	P19955	123 aa		0.53	□□□□□ -2.32
snR78	snR78	ODC2	Q99297	307 aa		0.53	□□□□□ -2.32
snR78	snR78	VMA6	P32366	345 aa	Known RBP	0.52	□□□□□ -2.33
snR78	snR78	RPB7	P34087	171 aa		0.52	□□□□□ -2.33
snR78	snR78	MIC12	P38341	106 aa		0.52	□□□□□ -2.33
snR78	snR78	YHL018W	P38744	120 aa	Predicted RBP	0.52	□□□□□ -2.33
snR78	snR78	GET1	P53192	235 aa		0.52	□□□□□ -2.33
snR78	snR78	DAD4	P69851	72 aa		0.52	□□□□□ -2.33
snR78	snR78	IKI3	Q06706	1349 aa	Known RBP	0.52	□□□□□ -2.33
snR78	snR78	RHO1	P06780	209 aa	Known RBP	0.51	□□□□□ -2.33
snR78	snR78	COG5	P53951	403 aa		0.51	□□□□□ -2.33
snR78	snR78	THP2	O13539	261 aa	Known RBP	0.5	□□□□□ -2.33
snR78	snR78	PRX1	P34227	261 aa	Known RBP	0.5	□□□□□ -2.33
snR78	snR78	PET191	Q02772	108 aa		0.5	□□□□□ -2.33
snR78	snR78	UPS3	Q04006	179 aa		0.5	□□□□□ -2.33
snR78	snR78	PRP11	Q07350	266 aa	Predicted RBP	0.5	□□□□□ -2.33
snR78	snR78	FMP49	A0A023PZB3	126 aa		0.49	□□□□□ -2.33
snR78	snR78	RPL25	P04456	142 aa	Known RBP	0.49	□□□□□ -2.33
snR78	snR78	MAG1	P22134	296 aa	Known RBP	0.49	□□□□□ -2.33
snR78	snR78	MRPL15	P36523	253 aa		0.49	□□□□□ -2.33
snR78	snR78	AIM25	P47140	327 aa		0.49	□□□□□ -2.33
snR78	snR78	HNT1	Q04344	158 aa	Known RBP	0.49	□□□□□ -2.33
snR78	snR78	FIT2	Q08906	153 aa		0.49	□□□□□ -2.33
snR78	snR78	RPL24B	P24000	155 aa	Known RBP	0.48	□□□□□ -2.33
snR78	snR78	YDR391C	Q04170	232 aa		0.48	□□□□□ -2.33
snR78	snR78	COX8	P04039	78 aa		0.47	□□□□□ -2.33
snR78	snR78	PDR17	P53844	350 aa		0.47	□□□□□ -2.33
snR78	snR78	LSM7	P53905	115 aa	Known RBP	0.47	□□□□□ -2.33
snR78	snR78	YNG1	Q08465	219 aa		0.47	□□□□□ -2.33
snR78	snR78	UBC12	P52491	188 aa		0.46	□□□□□ -2.34
snR78	snR78	IRC23	Q08416	157 aa		0.46	□□□□□ -2.34
snR78	snR78	PAN3	P36102	679 aa	Predicted RBP	0.45	□□□□□ -2.34
snR78	snR78	YMR226C	Q05016	267 aa	Known RBP	0.45	□□□□□ -2.34
snR78	snR78	SEY1	Q99287	776 aa		0.45	□□□□□ -2.34
snR78	snR78	MET31	Q03081	177 aa		0.44	□□□□□ -2.34
snR78	snR78	BNA7	Q04066	261 aa		0.44	□□□□□ -2.34
snR78	snR78	RNH202	Q05635	350 aa		0.44	□□□□□ -2.34
snR78	snR78	YPR203W	Q08994	102 aa		0.44	□□□□□ -2.34
snR78	snR78	JLP1	Q12358	412 aa		0.44	□□□□□ -2.34
snR78	snR78	INO80	P53115	1489 aa		0.43	□□□□□ -2.34
snR78	snR78	IRC18	P47056	224 aa		0.43	□□□□□ -2.34
snR78	snR78	YPR013C	Q12145	317 aa		0.43	□□□□□ -2.34
snR78	snR78	YCR090C	P25654	182 aa	Known RBP	0.42	□□□□□ -2.34
snR78	snR78	PPA2	P28239	310 aa		0.42	□□□□□ -2.34
snR78	snR78	AHT1	P29589	182 aa		0.42	□□□□□ -2.34
snR78	snR78	OCH1	P31755	480 aa		0.42	□□□□□ -2.34
snR78	snR78	HMF1	P40037	129 aa	Known RBP	0.42	□□□□□ -2.34
snR78	snR78	YER085C	P40058	173 aa		0.42	□□□□□ -2.34
snR78	snR78	ADO1	P47143	340 aa	Known RBP	0.42	□□□□□ -2.34
snR78	snR78	MDM32	Q12171	622 aa		0.42	□□□□□ -2.34
snR78	snR78	UBC8	P28263	218 aa		0.41	□□□□□ -2.34
snR78	snR78	YHL037C	P38733	133 aa		0.41	□□□□□ -2.34
snR78	snR78	MGA1	P53050	456 aa		0.41	□□□□□ -2.34
snR78	snR78	YBR121C-A	P0C5L4	52 aa		0.4	□□□□□ -2.35
snR78	snR78	TRM5	P38793	499 aa		0.4	□□□□□ -2.35
snR78	snR78	THG1	P53215	237 aa	Known RBP	0.4	□□□□□ -2.35
snR78	snR78	MER1	P16523	270 aa		0.39	□□□□□ -2.35
snR78	snR78	ARO7	P32178	256 aa		0.39	□□□□□ -2.35
snR78	snR78	RTC3	P38804	111 aa	Predicted RBP	0.39	□□□□□ -2.35
snR78	snR78	YIL102C	P40488	101 aa		0.39	□□□□□ -2.35
snR78	snR78	ALB1	P47019	175 aa	Predicted RBP	0.39	□□□□□ -2.35
snR78	snR78	YMR295C	Q03559	197 aa		0.39	□□□□□ -2.35
snR78	snR78	YKL183C-A	Q3E765	70 aa		0.39	□□□□□ -2.35

Retrieved 100 of 5,963 RNA–protein pairs in 53.1 ms