RNA–Protein interactions for RNA: YJL154C

VPS35, Transcript of Endosomal subunit of membrane-associated retromer complex, yeastyeast

Gene VPS35, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS35YJL154C TPN1P53099 579 aa1.54□□□□□ -2.16
VPS35YJL154C ABF2Q02486 183 aa1.54□□□□□ -2.16
VPS35YJL154C TRM44Q02648 567 aaKnown RBP1.54□□□□□ -2.16
VPS35YJL154C CSN9Q03981 162 aa1.54□□□□□ -2.16
VPS35YJL154C YPR195CQ06594 109 aa1.54□□□□□ -2.16
VPS35YJL154C YPR063CQ12160 140 aa1.54□□□□□ -2.16
VPS35YJL154C FYV7Q12247 151 aa1.54□□□□□ -2.16
VPS35YJL154C JLP1Q12358 412 aa1.54□□□□□ -2.16
VPS35YJL154C YDL012CQ12489 107 aa1.54□□□□□ -2.16
VPS35YJL154C ZWF1P11412 505 aaKnown RBP1.54□□□□□ -2.16
VPS35YJL154C PHO80P20052 293 aa1.54□□□□□ -2.16
VPS35YJL154C IDP1P21954 428 aaKnown RBP1.54□□□□□ -2.16
VPS35YJL154C RNA15P25299 296 aaPredicted RBP1.54□□□□□ -2.16
VPS35YJL154C ERG2P32352 222 aa1.54□□□□□ -2.16
VPS35YJL154C ALK2P32789 676 aaPredicted RBP1.54□□□□□ -2.16
VPS35YJL154C NTF2P33331 125 aaKnown RBP1.54□□□□□ -2.16
VPS35YJL154C TVP38P36164 337 aa1.54□□□□□ -2.16
VPS35YJL154C HEK2P38199 381 aaKnown RBP RIP-Chip data1.54□□□□□ -2.16not detected
VPS35YJL154C SMB1P40018 196 aaKnown RBP1.54□□□□□ -2.16
VPS35YJL154C IRC18P47056 224 aa1.54□□□□□ -2.16
VPS35YJL154C NBP1P52919 319 aaPredicted RBP1.54□□□□□ -2.16
VPS35YJL154C ALG13P53178 202 aa1.54□□□□□ -2.16
VPS35YJL154C ARL3Q02804 198 aa1.54□□□□□ -2.16
VPS35YJL154C YML096WQ04489 525 aa1.54□□□□□ -2.16
VPS35YJL154C FRQ1Q06389 190 aa1.54□□□□□ -2.16
VPS35YJL154C LDB18Q07887 179 aa1.54□□□□□ -2.16
VPS35YJL154C YLR050CQ12155 161 aaKnown RBP1.54□□□□□ -2.16
VPS35YJL154C EFG1Q3E705 233 aaKnown RBP1.54□□□□□ -2.16
VPS35YJL154C UTP10P42945 1769 aaKnown RBP1.54□□□□□ -2.16
VPS35YJL154C MEC1P38111 2368 aa1.54□□□□□ -2.16
VPS35YJL154C HKR1P41809 1802 aa1.54□□□□□ -2.16
VPS35YJL154C YCR025CP25352 136 aa1.53□□□□□ -2.16
VPS35YJL154C UGX2P32772 223 aa1.53□□□□□ -2.16
VPS35YJL154C YBL010CP32788 280 aa1.53□□□□□ -2.16
VPS35YJL154C PRS3P38689 320 aaKnown RBP1.53□□□□□ -2.16
VPS35YJL154C PFS2P42841 465 aaKnown RBP1.53□□□□□ -2.16
VPS35YJL154C OST3P48439 350 aa1.53□□□□□ -2.16
VPS35YJL154C MMS2P53152 137 aa1.53□□□□□ -2.16
VPS35YJL154C PLP1Q04004 230 aa1.53□□□□□ -2.16
VPS35YJL154C CDC28P00546 298 aaKnown RBP1.53□□□□□ -2.16
VPS35YJL154C HOM6P31116 359 aaKnown RBP1.53□□□□□ -2.16
VPS35YJL154C GSP1P32835 219 aaKnown RBP1.53□□□□□ -2.16
VPS35YJL154C GSP2P32836 220 aaKnown RBP1.53□□□□□ -2.16
VPS35YJL154C SUI1P32911 108 aaKnown RBP1.53□□□□□ -2.16
VPS35YJL154C POP8P38208 133 aa1.53□□□□□ -2.16
VPS35YJL154C FMP23P38231 175 aa1.53□□□□□ -2.16
VPS35YJL154C CUE1P38428 203 aa1.53□□□□□ -2.16
VPS35YJL154C GRE3P38715 327 aaKnown RBP RIP-Chip data1.53□□□□□ -2.16not detected
VPS35YJL154C FCY21P40039 528 aa1.53□□□□□ -2.16
VPS35YJL154C RGI1P40043 161 aaPredicted RBP1.53□□□□□ -2.16
VPS35YJL154C RIO2P40160 425 aaKnown RBP1.53□□□□□ -2.16
VPS35YJL154C NUP57P48837 541 aa1.53□□□□□ -2.16
VPS35YJL154C GTR2P53290 341 aa1.53□□□□□ -2.16
VPS35YJL154C MPA43P53583 542 aaPredicted RBP1.53□□□□□ -2.16
VPS35YJL154C CWC27Q02770 301 aa1.53□□□□□ -2.16
VPS35YJL154C AIM34Q03673 198 aa1.53□□□□□ -2.16
VPS35YJL154C YMR166CQ03829 368 aa1.53□□□□□ -2.16
VPS35YJL154C GRX8Q05926 109 aa1.53□□□□□ -2.16
VPS35YJL154C NOC4Q06512 552 aaPredicted RBP1.53□□□□□ -2.16
VPS35YJL154C YCT1Q12235 531 aa1.53□□□□□ -2.16
VPS35YJL154C TPO4Q12256 659 aa1.53□□□□□ -2.16
VPS35YJL154C RTR2Q12378 196 aa1.53□□□□□ -2.16
VPS35YJL154C RPL28P02406 149 aaKnown RBP1.53□□□□□ -2.17
VPS35YJL154C SPT3P06844 337 aa1.53□□□□□ -2.17
VPS35YJL154C SCL1P21243 252 aaKnown RBP1.53□□□□□ -2.17
VPS35YJL154C RPS1BP23248 255 aaKnown RBP1.53□□□□□ -2.17
VPS35YJL154C YCR023CP25351 611 aa1.53□□□□□ -2.17
VPS35YJL154C MGT1P26188 188 aa1.53□□□□□ -2.17
VPS35YJL154C YKL075CP36083 450 aa1.53□□□□□ -2.17
VPS35YJL154C NVJ1P38881 321 aa1.53□□□□□ -2.17
VPS35YJL154C YER076CP40049 302 aa1.53□□□□□ -2.17
VPS35YJL154C SYS1P41544 203 aa1.53□□□□□ -2.17
VPS35YJL154C YJL016WP47072 561 aa1.53□□□□□ -2.17
VPS35YJL154C GPI14P47088 403 aaKnown RBP1.53□□□□□ -2.17
VPS35YJL154C PAC10P48363 199 aa1.53□□□□□ -2.17
VPS35YJL154C ORM1P53224 222 aa1.53□□□□□ -2.17
VPS35YJL154C ALG9P53868 555 aaKnown RBP1.53□□□□□ -2.17
VPS35YJL154C YNL095CP53932 642 aa1.53□□□□□ -2.17
VPS35YJL154C RRP40Q08285 240 aaKnown RBP1.53□□□□□ -2.17
VPS35YJL154C YOR283WQ12040 230 aaKnown RBP1.53□□□□□ -2.17
VPS35YJL154C YLR046CQ12253 270 aa1.53□□□□□ -2.17
VPS35YJL154C MRX4Q12467 430 aa1.53□□□□□ -2.17
VPS35YJL154C YAL063C-AQ3E791 96 aa1.53□□□□□ -2.17
VPS35YJL154C MET2P08465 486 aa1.52□□□□□ -2.17
VPS35YJL154C QRI5P32344 111 aa1.52□□□□□ -2.17
VPS35YJL154C TKL2P33315 681 aa1.52□□□□□ -2.17
VPS35YJL154C LHP1P33399 275 aaKnown RBP1.52□□□□□ -2.17
VPS35YJL154C YBR096WP38256 230 aa1.52□□□□□ -2.17
VPS35YJL154C BRR6P53062 197 aa1.52□□□□□ -2.17
VPS35YJL154C TIM8P57744 87 aa1.52□□□□□ -2.17
VPS35YJL154C YMR279CQ03263 540 aa1.52□□□□□ -2.17
VPS35YJL154C YDR476CQ03362 224 aa1.52□□□□□ -2.17
VPS35YJL154C YPL264CQ08980 353 aa1.52□□□□□ -2.17
VPS35YJL154C RIB3Q99258 208 aa1.52□□□□□ -2.17
VPS35YJL154C YPR096CO13587 100 aa1.52□□□□□ -2.17
VPS35YJL154C YOL163WP0CF20 169 aa1.52□□□□□ -2.17
VPS35YJL154C SEC22P22214 214 aa1.52□□□□□ -2.17
VPS35YJL154C SUA7P29055 345 aaPredicted RBP1.52□□□□□ -2.17
VPS35YJL154C ARO7P32178 256 aa1.52□□□□□ -2.17
VPS35YJL154C SPS18P32572 300 aa1.52□□□□□ -2.17
Retrieved 100 of 5,963 RNA–protein pairs in 68.2 ms