RNA–Protein interactions for RNA: NME1

NME1, Transcript of RNA component of RNase MRP, yeast

Gene NME1, Length 340 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NME1	NME1	CKS1	P20486	150 aa	Known RBP	4.88	□□□□□ -1.63
NME1	NME1	SNC2	P33328	115 aa		4.88	□□□□□ -1.63
NME1	NME1	GVP36	P40531	326 aa	Known RBP	4.88	□□□□□ -1.63
NME1	NME1	ASF2	P32448	525 aa	Predicted RBP	4.87	□□□□□ -1.63
NME1	NME1	DOC1	P53068	250 aa		4.87	□□□□□ -1.63
NME1	NME1	BOL1	Q3E793	110 aa		4.87	□□□□□ -1.63
NME1	NME1	YET1	P35723	206 aa		4.86	□□□□□ -1.63
NME1	NME1	SVP26	P38869	228 aa		4.86	□□□□□ -1.63
NME1	NME1	GLE2	P40066	365 aa		4.86	□□□□□ -1.63
NME1	NME1	RTC4	P53850	401 aa		4.86	□□□□□ -1.63
NME1	NME1	FUS2	Q05670	677 aa		4.86	□□□□□ -1.63
NME1	NME1	IGO2	Q9P305	131 aa		4.86	□□□□□ -1.63
NME1	NME1	CAF4	P36130	643 aa		4.85	□□□□□ -1.63
NME1	NME1	ATP7	P30902	174 aa		4.84	□□□□□ -1.63
NME1	NME1	AGE2	P40529	298 aa		4.84	□□□□□ -1.63
NME1	NME1	BOL2	P53082	120 aa		4.84	□□□□□ -1.63
NME1	NME1	DDI2	P0CH63	225 aa		4.83	□□□□□ -1.64
NME1	NME1	DDI3	P0CH64	225 aa		4.83	□□□□□ -1.64
NME1	NME1	HNT1	Q04344	158 aa	Known RBP	4.83	□□□□□ -1.64
NME1	NME1	ATP15	P21306	62 aa		4.82	□□□□□ -1.64
NME1	NME1	CNB1	P25296	175 aa		4.82	□□□□□ -1.64
NME1	NME1	DSE2	P38844	325 aa		4.82	□□□□□ -1.64
NME1	NME1	EAF6	P47128	113 aa		4.82	□□□□□ -1.64
NME1	NME1	MBF1	O14467	151 aa	Known RBP	4.81	□□□□□ -1.64
NME1	NME1	VTC1	P40046	129 aa	RIP-Chip data	4.81	□□□□□ -1.64	not detected
NME1	NME1	YNL217W	P40152	326 aa		4.81	□□□□□ -1.64
NME1	NME1	PDS1	P40316	373 aa	Predicted RBP	4.81	□□□□□ -1.64
NME1	NME1	ERG10	P41338	398 aa	Known RBP	4.81	□□□□□ -1.64
NME1	NME1	YDR274C	P87283	123 aa		4.81	□□□□□ -1.64
NME1	NME1	AYR1	P40471	297 aa		4.8	□□□□□ -1.64
NME1	NME1	YNL184C	P53876	108 aa		4.8	□□□□□ -1.64
NME1	NME1	SHG1	P38337	142 aa		4.79	□□□□□ -1.64
NME1	NME1	YBR285W	P38354	144 aa		4.79	□□□□□ -1.64
NME1	NME1	YNR077C	P53758	84 aa		4.79	□□□□□ -1.64
NME1	NME1	ARO80	Q04052	950 aa		4.79	□□□□□ -1.64
NME1	NME1	NOC4	Q06512	552 aa	Predicted RBP	4.79	□□□□□ -1.64
NME1	NME1	RIO1	Q12196	484 aa	Known RBP	4.79	□□□□□ -1.64
NME1	NME1	PEP8	P40335	379 aa		4.78	□□□□□ -1.64
NME1	NME1	YET3	Q07451	203 aa		4.78	□□□□□ -1.64
NME1	NME1	FSF1	Q12029	327 aa	Known RBP	4.78	□□□□□ -1.64
NME1	NME1	MDH2	P22133	377 aa		4.77	□□□□□ -1.65
NME1	NME1	AIM2	P39721	246 aa		4.77	□□□□□ -1.65
NME1	NME1	YOL024W	Q08172	172 aa		4.77	□□□□□ -1.65
NME1	NME1	SNF4	P12904	322 aa		4.76	□□□□□ -1.65
NME1	NME1	SEC72	P39742	193 aa	Known RBP	4.76	□□□□□ -1.65
NME1	NME1	YLR036C	Q07986	203 aa		4.76	□□□□□ -1.65
NME1	NME1	TAH1	P25638	111 aa	Predicted RBP	4.75	□□□□□ -1.65
NME1	NME1	YCR090C	P25654	182 aa	Known RBP	4.75	□□□□□ -1.65
NME1	NME1	ARP3	P47117	449 aa	Known RBP	4.75	□□□□□ -1.65
NME1	NME1	OCH1	P31755	480 aa		4.74	□□□□□ -1.65
NME1	NME1	FZF1	P32805	299 aa		4.74	□□□□□ -1.65
NME1	NME1	UBC12	P52491	188 aa		4.74	□□□□□ -1.65
NME1	NME1	PDR18	P53756	1333 aa		4.73	□□□□□ -1.65
NME1	NME1	SML1	Q04964	104 aa		4.73	□□□□□ -1.65
NME1	NME1	YDL085C-A	Q3E7B7	68 aa	Known RBP	4.73	□□□□□ -1.65
NME1	NME1	TRX3	P25372	127 aa		4.72	□□□□□ -1.65
NME1	NME1	SKI6	P46948	246 aa	Predicted RBP	4.72	□□□□□ -1.65
NME1	NME1	NRK1	P53915	240 aa		4.72	□□□□□ -1.65
NME1	NME1	TLG1	Q03322	224 aa		4.72	□□□□□ -1.65
NME1	NME1	YLR031W	Q07978	186 aa		4.72	□□□□□ -1.65
NME1	NME1	DGA1	Q08650	418 aa		4.72	□□□□□ -1.65
NME1	NME1	SHE2	P36068	246 aa	Known RBP RIP-Chip data	4.71	□□□□□ -1.66	not detected
NME1	NME1	OPY1	P38271	328 aa		4.71	□□□□□ -1.66
NME1	NME1	EGD2	P38879	174 aa	Known RBP	4.71	□□□□□ -1.66
NME1	NME1	BUD25	P85052	153 aa		4.71	□□□□□ -1.66
NME1	NME1	ODC2	Q99297	307 aa		4.71	□□□□□ -1.66
NME1	NME1	ATG40	Q99325	256 aa		4.71	□□□□□ -1.66
NME1	NME1	MET5	P47169	1442 aa		4.71	□□□□□ -1.66
NME1	NME1	ARO8	P53090	500 aa	Known RBP	4.7	□□□□□ -1.66
NME1	NME1	SNO1	Q03144	224 aa		4.7	□□□□□ -1.66
NME1	NME1	GRX8	Q05926	109 aa		4.7	□□□□□ -1.66
NME1	NME1	CPA1	P07258	411 aa	Known RBP	4.69	□□□□□ -1.66
NME1	NME1	KDX1	P36005	433 aa		4.68	□□□□□ -1.66
NME1	NME1	PAN3	P36102	679 aa	Predicted RBP	4.68	□□□□□ -1.66
NME1	NME1	AVT2	P39981	480 aa		4.68	□□□□□ -1.66
NME1	NME1	SER2	P42941	309 aa		4.68	□□□□□ -1.66
NME1	NME1	YBR209W	P38311	105 aa		4.67	□□□□□ -1.66
NME1	NME1	GAA1	P39012	614 aa		4.67	□□□□□ -1.66
NME1	NME1	YEA4	P40004	342 aa		4.67	□□□□□ -1.66
NME1	NME1	POG1	P40473	351 aa		4.67	□□□□□ -1.66
NME1	NME1	SAY1	P53324	424 aa		4.67	□□□□□ -1.66
NME1	NME1	NUP49	Q02199	472 aa		4.67	□□□□□ -1.66
NME1	NME1	GCY1	P14065	312 aa	Known RBP RIP-Chip data	4.66	□□□□□ -1.66	not detected
NME1	NME1	YJR111C	P47148	283 aa	Known RBP	4.66	□□□□□ -1.66
NME1	NME1	DYN3	Q04949	312 aa		4.66	□□□□□ -1.66
NME1	NME1	GRE1	Q08969	168 aa		4.66	□□□□□ -1.66
NME1	NME1	LSM4	P40070	187 aa	Known RBP	4.64	□□□□□ -1.67
NME1	NME1	YER134C	P40081	178 aa		4.64	□□□□□ -1.67
NME1	NME1	TMA22	P47089	198 aa	Predicted RBP	4.63	□□□□□ -1.67
NME1	NME1	TFC1	P32367	649 aa		4.62	□□□□□ -1.67
NME1	NME1	YOL014W	Q08110	124 aa		4.62	□□□□□ -1.67
NME1	NME1	YLR236C	A0A023PZG4	107 aa		4.61	□□□□□ -1.67
NME1	NME1	TRR1	P29509	319 aa	Known RBP	4.61	□□□□□ -1.67
NME1	NME1	AIM34	Q03673	198 aa		4.61	□□□□□ -1.67
NME1	NME1	POR1	P04840	283 aa	Known RBP	4.6	□□□□□ -1.67
NME1	NME1	FMP23	P38231	175 aa		4.6	□□□□□ -1.67
NME1	NME1	FMP32	P43557	207 aa		4.6	□□□□□ -1.67
NME1	NME1	YPR014C	Q6B0W2	109 aa		4.6	□□□□□ -1.67
NME1	NME1	FLO9	P39712	1322 aa		4.59	□□□□□ -1.67
NME1	NME1	ERJ5	P43613	295 aa	Predicted RBP	4.59	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 31.8 ms