RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 VPS52Q8N1B4 723 aa16.1■□□□□ 0.17
NUP54-213ENST00000513352 FBXL13Q8NEE6 735 aa16.1■□□□□ 0.17
NUP54-213ENST00000513352 TAS1R2Q8TE23 839 aa16.1■□□□□ 0.17
NUP54-213ENST00000513352 ELMO3Q96BJ8 720 aa16.1■□□□□ 0.17
NUP54-213ENST00000513352 PI4K2AQ9BTU6 479 aa16.1■□□□□ 0.17
NUP54-213ENST00000513352 GPR62Q9BZJ7 368 aa16.1■□□□□ 0.17
NUP54-213ENST00000513352 PRDM12Q9H4Q4 367 aa16.1■□□□□ 0.17
NUP54-213ENST00000513352 ENTPD7Q9NQZ7 604 aa16.1■□□□□ 0.17
NUP54-213ENST00000513352 KPNA7A9QM74 516 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 H3BNC9 293 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 SPTLC1O15269 473 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 GRM6O15303 877 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 ZNF18P17022 549 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 LILRA4P59901 499 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 TNNC1P63316 161 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 PLCB3Q01970 1234 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 VWA3BQ502W6 1294 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 TIGD5Q53EQ6 642 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 WDR44Q5JSH3 913 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 FAM171A1Q5VUB5 890 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 SCARA5Q6ZMJ2 495 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 C15orf39Q6ZRI6 1047 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 TMC7Q7Z402 723 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 DDX53Q86TM3 631 aaKnown RBP16.09■□□□□ 0.17
NUP54-213ENST00000513352 CXorf38Q8TB03 319 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 MICAL1Q8TDZ2 1067 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 POF1BQ8WVV4 589 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 B3GALT6Q96L58 329 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 SENP8Q96LD8 212 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 MMS19Q96T76 1030 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 HERC2P3Q9BVR0 1158 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 HSD3B7Q9H2F3 369 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 TTYH1Q9H313 450 aaPredicted RBP16.09■□□□□ 0.17
NUP54-213ENST00000513352 NDST4Q9H3R1 872 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 NXF1Q9UBU9 619 aaKnown RBP16.09■□□□□ 0.17
NUP54-213ENST00000513352 SNX9Q9Y5X1 595 aa16.09■□□□□ 0.17
NUP54-213ENST00000513352 C2CD2LO14523 706 aa16.08■□□□□ 0.16
NUP54-213ENST00000513352 CYB561D2O14569 222 aa16.08■□□□□ 0.16
NUP54-213ENST00000513352 LPXNO60711 386 aa16.08■□□□□ 0.16
NUP54-213ENST00000513352 SERPINC1P01008 464 aa16.08■□□□□ 0.16
NUP54-213ENST00000513352 URODP06132 367 aa16.08■□□□□ 0.16
NUP54-213ENST00000513352 ODC1P11926 461 aa16.08■□□□□ 0.16
NUP54-213ENST00000513352 TKTP29401 623 aaKnown RBP16.08■□□□□ 0.16
NUP54-213ENST00000513352 ATICP31939 592 aa16.08■□□□□ 0.16
NUP54-213ENST00000513352 COPB1P53618 953 aaKnown RBP16.08■□□□□ 0.16
NUP54-213ENST00000513352 BMS1Q14692 1282 aaKnown RBP16.08■□□□□ 0.16
NUP54-213ENST00000513352 SGSM1Q2NKQ1 1148 aa16.08■□□□□ 0.16
NUP54-213ENST00000513352 ZNF667Q5HYK9 610 aa16.08■□□□□ 0.16
NUP54-213ENST00000513352 FKBP15Q5T1M5 1219 aa16.08■□□□□ 0.16
NUP54-213ENST00000513352 PLPP4Q5VZY2 271 aa16.08■□□□□ 0.16
NUP54-213ENST00000513352 SPOPLQ6IQ16 392 aa16.08■□□□□ 0.16
NUP54-213ENST00000513352 CD300LGQ6UXG3 332 aa16.08■□□□□ 0.16
NUP54-213ENST00000513352 TAS1R1Q7RTX1 841 aa16.08■□□□□ 0.16
NUP54-213ENST00000513352 SPPL3Q8TCT6 385 aa16.08■□□□□ 0.16
NUP54-213ENST00000513352 SEMA4DQ92854 862 aa16.08■□□□□ 0.16
NUP54-213ENST00000513352 SUSD3Q96L08 255 aa16.08■□□□□ 0.16
NUP54-213ENST00000513352 CRACR2AQ9BSW2 395 aa16.08■□□□□ 0.16
NUP54-213ENST00000513352 VN1R3Q9BXE9 311 aa16.08■□□□□ 0.16
NUP54-213ENST00000513352 TLR9Q9NR96 1032 aa16.08■□□□□ 0.16
NUP54-213ENST00000513352 RAB20Q9NX57 234 aa16.08■□□□□ 0.16
NUP54-213ENST00000513352 GCNT4Q9P109 453 aa16.08■□□□□ 0.16
NUP54-213ENST00000513352 STK39Q9UEW8 545 aa16.08■□□□□ 0.16
NUP54-213ENST00000513352 LIMA1Q9UHB6 759 aaKnown RBP16.08■□□□□ 0.16
NUP54-213ENST00000513352 LZTS1Q9Y250 596 aa16.08■□□□□ 0.16
NUP54-213ENST00000513352 TIMM13Q9Y5L4 95 aaPredicted RBP16.08■□□□□ 0.16
NUP54-213ENST00000513352 VWA8A3KMH1 1905 aa16.07■□□□□ 0.16
NUP54-213ENST00000513352 LAMA3Q16787 3333 aa16.07■□□□□ 0.16
NUP54-213ENST00000513352 ARHGEF37A1IGU5 675 aa16.07■□□□□ 0.16
NUP54-213ENST00000513352 P4HA2O15460 535 aa16.07■□□□□ 0.16
NUP54-213ENST00000513352 HUS1O60921 280 aa16.07■□□□□ 0.16
NUP54-213ENST00000513352 SOD2P04179 222 aa16.07■□□□□ 0.16
NUP54-213ENST00000513352 P4HA1P13674 534 aa16.07■□□□□ 0.16
NUP54-213ENST00000513352 PAX3P23760 479 aa16.07■□□□□ 0.16
NUP54-213ENST00000513352 GLUD2P49448 558 aa16.07■□□□□ 0.16
NUP54-213ENST00000513352 MCCD1P59942 119 aaPredicted RBP16.07■□□□□ 0.16
NUP54-213ENST00000513352 NOP14P78316 857 aaKnown RBP16.07■□□□□ 0.16
NUP54-213ENST00000513352 PLCB2Q00722 1185 aa16.07■□□□□ 0.16
NUP54-213ENST00000513352 UBE3AQ05086 875 aa16.07■□□□□ 0.16
NUP54-213ENST00000513352 LRMPQ12912 555 aa16.07■□□□□ 0.16
NUP54-213ENST00000513352 USP41Q3LFD5 358 aa16.07■□□□□ 0.16
NUP54-213ENST00000513352 WDR72Q3MJ13 1102 aa16.07■□□□□ 0.16
NUP54-213ENST00000513352 FILIP1LQ4L180 1135 aa16.07■□□□□ 0.16
NUP54-213ENST00000513352 MIIPQ5JXC2 388 aa16.07■□□□□ 0.16
NUP54-213ENST00000513352 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.07■□□□□ 0.16
NUP54-213ENST00000513352 METTL23Q86XA0 190 aa16.07■□□□□ 0.16
NUP54-213ENST00000513352 APPL2Q8NEU8 664 aa16.07■□□□□ 0.16
NUP54-213ENST00000513352 AUTS2Q8WXX7 1259 aa16.07■□□□□ 0.16
NUP54-213ENST00000513352 RIN2Q8WYP3 895 aaPredicted RBP16.07■□□□□ 0.16
NUP54-213ENST00000513352 TCF25Q9BQ70 676 aa16.07■□□□□ 0.16
NUP54-213ENST00000513352 TTPALQ9BTX7 342 aa16.07■□□□□ 0.16
NUP54-213ENST00000513352 INTS2Q9H0H0 1204 aaKnown RBP16.07■□□□□ 0.16
NUP54-213ENST00000513352 PCDHB8Q9UN66 801 aa16.07■□□□□ 0.16
NUP54-213ENST00000513352 POLIQ9UNA4 740 aa16.07■□□□□ 0.16
NUP54-213ENST00000513352 CHD9Q3L8U1 2897 aa16.06■□□□□ 0.16
NUP54-213ENST00000513352 LRRN2O75325 713 aa16.06■□□□□ 0.16
NUP54-213ENST00000513352 DNAJB1P25685 340 aa16.06■□□□□ 0.16
NUP54-213ENST00000513352 AARSP49588 968 aaKnown RBP eCLIP16.06■□□□□ 0.16
NUP54-213ENST00000513352 GRIN2CQ14957 1233 aa16.06■□□□□ 0.16
NUP54-213ENST00000513352 PTPROQ16827 1216 aa16.06■□□□□ 0.16
NUP54-213ENST00000513352 EXOC3L4Q17RC7 722 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms