RNA–Protein interactions for RNA: YJL050W

MTR4, Transcript of ATP-dependent 3'-5' RNA helicase of the DExD/H family, yeast

Gene MTR4, Length 3,222 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MTR4	YJL050W	DEF1	P35732	738 aa	Known RBP	4.08	□□□□□ -1.76
MTR4	YJL050W	VPS8	P39702	1274 aa		4.08	□□□□□ -1.76
MTR4	YJL050W	YGL140C	P53120	1219 aa		4.08	□□□□□ -1.76
MTR4	YJL050W	YGL082W	P53155	381 aa		4.08	□□□□□ -1.76
MTR4	YJL050W	RSF2	P46974	1380 aa		4.07	□□□□□ -1.76
MTR4	YJL050W	CLB5	P30283	435 aa		4.07	□□□□□ -1.76
MTR4	YJL050W	TPD3	P31383	635 aa		4.07	□□□□□ -1.76
MTR4	YJL050W	RTT107	P38850	1070 aa		4.07	□□□□□ -1.76
MTR4	YJL050W	PRP3	Q03338	469 aa	Predicted RBP	4.07	□□□□□ -1.76
MTR4	YJL050W	COG4	Q06096	861 aa		4.07	□□□□□ -1.76
MTR4	YJL050W	ESC2	Q06340	456 aa		4.07	□□□□□ -1.76
MTR4	YJL050W	ADE6	P38972	1358 aa	Known RBP	4.07	□□□□□ -1.76
MTR4	YJL050W	MRPL10	P36520	322 aa		4.07	□□□□□ -1.76
MTR4	YJL050W	BRN1	P38170	754 aa		4.07	□□□□□ -1.76
MTR4	YJL050W	RSM25	P40496	264 aa		4.07	□□□□□ -1.76
MTR4	YJL050W	NKP2	Q06162	153 aa		4.07	□□□□□ -1.76
MTR4	YJL050W	ABP140	Q08641	628 aa	Known RBP	4.07	□□□□□ -1.76
MTR4	YJL050W	PSH1	Q12161	406 aa		4.07	□□□□□ -1.76
MTR4	YJL050W	DEP1	P31385	405 aa		4.06	□□□□□ -1.76
MTR4	YJL050W	GCD7	P32502	381 aa	Predicted RBP	4.06	□□□□□ -1.76
MTR4	YJL050W	RTR1	P40084	226 aa	Predicted RBP	4.06	□□□□□ -1.76
MTR4	YJL050W	DSN1	P40568	576 aa		4.06	□□□□□ -1.76
MTR4	YJL050W	MSH4	P40965	878 aa	Predicted RBP	4.06	□□□□□ -1.76
MTR4	YJL050W	RRP15	Q06511	250 aa	Predicted RBP	4.06	□□□□□ -1.76
MTR4	YJL050W	MAK21	Q12176	1025 aa	Known RBP	4.06	□□□□□ -1.76
MTR4	YJL050W	SEC39	Q12745	709 aa		4.06	□□□□□ -1.76
MTR4	YJL050W	RPS19A	P07280	144 aa	Known RBP	4.06	□□□□□ -1.76
MTR4	YJL050W	RPS19B	P07281	144 aa	Predicted RBP	4.06	□□□□□ -1.76
MTR4	YJL050W	RPO41	P13433	1351 aa	Known RBP	4.06	□□□□□ -1.76
MTR4	YJL050W	TRP5	P00931	707 aa	Known RBP	4.06	□□□□□ -1.76
MTR4	YJL050W	ATE1	P16639	503 aa		4.06	□□□□□ -1.76
MTR4	YJL050W	BDF1	P35817	686 aa		4.06	□□□□□ -1.76
MTR4	YJL050W	VPS41	P38959	992 aa		4.06	□□□□□ -1.76
MTR4	YJL050W	CTK3	P46963	296 aa	Predicted RBP	4.06	□□□□□ -1.76
MTR4	YJL050W	SFI1	Q12369	946 aa		4.06	□□□□□ -1.76
MTR4	YJL050W	NPR3	P38742	1146 aa		4.05	□□□□□ -1.76
MTR4	YJL050W	SSL2	Q00578	843 aa		4.05	□□□□□ -1.76
MTR4	YJL050W	VPS20	Q04272	221 aa		4.05	□□□□□ -1.76
MTR4	YJL050W	PUF6	Q04373	656 aa	Known RBP	4.05	□□□□□ -1.76
MTR4	YJL050W	UTP13	Q05946	817 aa	Known RBP	4.05	□□□□□ -1.76
MTR4	YJL050W	ATG9	Q12142	997 aa		4.05	□□□□□ -1.76
MTR4	YJL050W	DDP1	Q99321	188 aa	Known RBP	4.05	□□□□□ -1.76
MTR4	YJL050W	SLX5	P32828	619 aa	Known RBP	4.05	□□□□□ -1.76
MTR4	YJL050W	MUD2	P36084	527 aa	Known RBP	4.05	□□□□□ -1.76
MTR4	YJL050W	MIC60	P36112	540 aa		4.05	□□□□□ -1.76
MTR4	YJL050W	AIM9	P40053	627 aa	Known RBP	4.05	□□□□□ -1.76
MTR4	YJL050W	MAL13	P53338	473 aa		4.05	□□□□□ -1.76
MTR4	YJL050W	YKL068W-A	Q3E826	78 aa		4.05	□□□□□ -1.76
MTR4	YJL050W	RNR2	P09938	399 aa	Known RBP	4.04	□□□□□ -1.76
MTR4	YJL050W	HXT13	P39924	564 aa		4.04	□□□□□ -1.76
MTR4	YJL050W	FRS2	P15625	503 aa	Known RBP	4.04	□□□□□ -1.76
MTR4	YJL050W	RIO2	P40160	425 aa	Known RBP	4.04	□□□□□ -1.76
MTR4	YJL050W	EPS1	P40557	701 aa		4.04	□□□□□ -1.76
MTR4	YJL050W	ALD4	P46367	519 aa	Known RBP	4.04	□□□□□ -1.76
MTR4	YJL050W	PEX19	Q07418	342 aa		4.04	□□□□□ -1.76
MTR4	YJL050W	MDG1	P53885	366 aa		4.04	□□□□□ -1.76
MTR4	YJL050W	DMA2	P53924	522 aa		4.04	□□□□□ -1.76
MTR4	YJL050W	VTC3	Q02725	835 aa		4.04	□□□□□ -1.76
MTR4	YJL050W	ERV41	Q04651	352 aa		4.04	□□□□□ -1.76
MTR4	YJL050W	YPL150W	Q12152	901 aa		4.04	□□□□□ -1.76
MTR4	YJL050W	RNA1	P11745	407 aa	Known RBP	4.03	□□□□□ -1.76
MTR4	YJL050W	CLB1	P24868	471 aa		4.03	□□□□□ -1.76
MTR4	YJL050W	RFT1	P38206	574 aa	Predicted RBP	4.03	□□□□□ -1.76
MTR4	YJL050W	PXR1	P53335	271 aa	Predicted RBP	4.03	□□□□□ -1.76
MTR4	YJL050W	TIM50	Q02776	476 aa		4.03	□□□□□ -1.76
MTR4	YJL050W	ETT1	Q08421	412 aa	Known RBP	4.03	□□□□□ -1.76
MTR4	YJL050W	SAC3	P46674	1301 aa		4.03	□□□□□ -1.76
MTR4	YJL050W	PTP3	P40048	928 aa		4.03	□□□□□ -1.76
MTR4	YJL050W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	4.03	□□□□□ -1.76	not detected
MTR4	YJL050W	TTI1	P36097	1038 aa		4.02	□□□□□ -1.77
MTR4	YJL050W	HGH1	P48362	394 aa	Known RBP	4.02	□□□□□ -1.77
MTR4	YJL050W	HXT17	P53631	564 aa		4.02	□□□□□ -1.77
MTR4	YJL050W	ECM23	Q02710	187 aa		4.02	□□□□□ -1.77
MTR4	YJL050W	MRX12	P47084	519 aa		4.02	□□□□□ -1.77
MTR4	YJL050W	STR2	P47164	639 aa		4.02	□□□□□ -1.77
MTR4	YJL050W	GYL1	Q04322	720 aa		4.02	□□□□□ -1.77
MTR4	YJL050W	APC11	Q12157	165 aa		4.02	□□□□□ -1.77
MTR4	YJL050W	SWH1	P35845	1188 aa		4.02	□□□□□ -1.77
MTR4	YJL050W	CCT5	P40413	562 aa	Known RBP	4.02	□□□□□ -1.77
MTR4	YJL050W	SPT2	P06843	333 aa	Predicted RBP	4.01	□□□□□ -1.77
MTR4	YJL050W	BIK1	P11709	440 aa		4.01	□□□□□ -1.77
MTR4	YJL050W	RRP1	P35178	278 aa	Predicted RBP	4.01	□□□□□ -1.77
MTR4	YJL050W	PRP43	P53131	767 aa	Known RBP	4.01	□□□□□ -1.77
MTR4	YJL050W	INP2	Q03824	705 aa		4.01	□□□□□ -1.77
MTR4	YJL050W	KEX2	P13134	814 aa		4.01	□□□□□ -1.77
MTR4	YJL050W	NCS2	P53923	493 aa	Predicted RBP	4.01	□□□□□ -1.77
MTR4	YJL050W	VPS30	Q02948	557 aa		4.01	□□□□□ -1.77
MTR4	YJL050W	IAH1	P41734	238 aa		4	□□□□□ -1.77
MTR4	YJL050W	MST1	P07236	462 aa		4	□□□□□ -1.77
MTR4	YJL050W	TIF4632	P39936	914 aa	Known RBP	4	□□□□□ -1.77
MTR4	YJL050W	SWE1	P32944	819 aa		4	□□□□□ -1.77
MTR4	YJL050W	CUS1	Q02554	436 aa	Predicted RBP	4	□□□□□ -1.77
MTR4	YJL050W	TAF8	Q03750	510 aa		4	□□□□□ -1.77
MTR4	YJL050W	HIM1	Q06674	414 aa		4	□□□□□ -1.77
MTR4	YJL050W	TLG2	Q08144	397 aa		4	□□□□□ -1.77
MTR4	YJL050W	RPL5	P26321	297 aa	Known RBP	3.99	□□□□□ -1.77
MTR4	YJL050W	SPT5	P27692	1063 aa	Known RBP	3.99	□□□□□ -1.77
MTR4	YJL050W	MNR2	P35724	969 aa		3.99	□□□□□ -1.77
MTR4	YJL050W	YPT11	P48559	417 aa		3.99	□□□□□ -1.77
MTR4	YJL050W	ALF1	P53904	254 aa		3.99	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 16.6 ms