RNA–Protein interactions for RNA: YFL005W

SEC4, Transcript of Rab family GTPase, yeast

Gene SEC4, Length 648 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum, Nucleus, Peroxisome .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC4	YFL005W	BIM1	P40013	344 aa		5.89	□□□□□ -1.47
SEC4	YFL005W	ATG32	P40458	529 aa		5.89	□□□□□ -1.47
SEC4	YFL005W	SBE2	P42223	864 aa	Known RBP	5.89	□□□□□ -1.47
SEC4	YFL005W	WTM2	Q12206	467 aa		5.89	□□□□□ -1.47
SEC4	YFL005W	YDJ1	P25491	409 aa	Known RBP	5.88	□□□□□ -1.47
SEC4	YFL005W	CSE4	P36012	229 aa		5.87	□□□□□ -1.47
SEC4	YFL005W	DAT1	P13483	248 aa	Known RBP	5.86	□□□□□ -1.47
SEC4	YFL005W	MCX1	P38323	520 aa	Predicted RBP	5.86	□□□□□ -1.47
SEC4	YFL005W	MRX12	P47084	519 aa		5.86	□□□□□ -1.47
SEC4	YFL005W	YNL108C	P53929	270 aa		5.86	□□□□□ -1.47
SEC4	YFL005W	SPT2	P06843	333 aa	Predicted RBP	5.85	□□□□□ -1.47
SEC4	YFL005W	AHP1	P38013	176 aa	Known RBP	5.85	□□□□□ -1.47
SEC4	YFL005W	TY1A-DR3	Q12441	440 aa		5.85	□□□□□ -1.47
SEC4	YFL005W	YNR014W	P53719	212 aa		5.84	□□□□□ -1.47
SEC4	YFL005W	ENO2	P00925	437 aa	Known RBP	5.83	□□□□□ -1.48
SEC4	YFL005W	SUP45	P12385	437 aa	Known RBP	5.83	□□□□□ -1.48
SEC4	YFL005W	UTR2	P32623	467 aa		5.83	□□□□□ -1.48
SEC4	YFL005W	ISR1	Q06098	443 aa	Known RBP	5.83	□□□□□ -1.48
SEC4	YFL005W	GPM1	P00950	247 aa	Known RBP	5.82	□□□□□ -1.48
SEC4	YFL005W	TIF1	P10081	395 aa	Known RBP	5.82	□□□□□ -1.48
SEC4	YFL005W	TBS1	P38114	1094 aa		5.82	□□□□□ -1.48
SEC4	YFL005W	FPS1	P23900	669 aa		5.81	□□□□□ -1.48
SEC4	YFL005W	ISF1	P32488	338 aa		5.81	□□□□□ -1.48
SEC4	YFL005W	APL6	P46682	809 aa		5.81	□□□□□ -1.48
SEC4	YFL005W	SPT5	P27692	1063 aa	Known RBP	5.8	□□□□□ -1.48
SEC4	YFL005W	BOI2	P39969	1040 aa		5.8	□□□□□ -1.48
SEC4	YFL005W	MCM16	Q12262	181 aa		5.8	□□□□□ -1.48
SEC4	YFL005W	YCK2	P23292	546 aa	Known RBP	5.79	□□□□□ -1.48
SEC4	YFL005W	ALA1	P40825	983 aa	Known RBP	5.79	□□□□□ -1.48
SEC4	YFL005W	EMP47	P43555	445 aa		5.79	□□□□□ -1.48
SEC4	YFL005W	IRE1	P32361	1115 aa		5.78	□□□□□ -1.48
SEC4	YFL005W	MET1	P36150	593 aa		5.78	□□□□□ -1.48
SEC4	YFL005W	UTP7	P40055	554 aa	Known RBP	5.78	□□□□□ -1.48
SEC4	YFL005W	RPL34B	P40525	121 aa	Known RBP	5.78	□□□□□ -1.48
SEC4	YFL005W	SUM1	P46676	1062 aa		5.78	□□□□□ -1.48
SEC4	YFL005W	RTG2	P32608	588 aa	Known RBP	5.77	□□□□□ -1.49
SEC4	YFL005W	RIM21	P48565	533 aa		5.77	□□□□□ -1.49
SEC4	YFL005W	ENO1	P00924	437 aa	Known RBP	5.76	□□□□□ -1.49
SEC4	YFL005W	JJJ2	P46997	583 aa		5.76	□□□□□ -1.49
SEC4	YFL005W	YDR215C	Q12240	137 aa		5.76	□□□□□ -1.49
SEC4	YFL005W	RDS2	P19541	446 aa	Known RBP	5.75	□□□□□ -1.49
SEC4	YFL005W	AMN1	P38285	549 aa	Predicted RBP	5.75	□□□□□ -1.49
SEC4	YFL005W	MRX10	Q05648	414 aa		5.75	□□□□□ -1.49
SEC4	YFL005W	MRPL16	P38064	232 aa		5.74	□□□□□ -1.49
SEC4	YFL005W	SLN1	P39928	1220 aa	Predicted RBP	5.74	□□□□□ -1.49
SEC4	YFL005W	LSB6	P42951	607 aa		5.74	□□□□□ -1.49
SEC4	YFL005W	KNS1	P32350	737 aa	Predicted RBP	5.73	□□□□□ -1.49
SEC4	YFL005W	SLX8	P40072	274 aa		5.73	□□□□□ -1.49
SEC4	YFL005W	TAT1	P38085	619 aa		5.72	□□□□□ -1.49
SEC4	YFL005W	HAL5	P38970	855 aa	Known RBP	5.72	□□□□□ -1.49
SEC4	YFL005W	UTP13	Q05946	817 aa	Known RBP	5.72	□□□□□ -1.49
SEC4	YFL005W	PDC5	P16467	563 aa	Known RBP	5.71	□□□□□ -1.5
SEC4	YFL005W	SHM1	P37292	490 aa	Predicted RBP	5.71	□□□□□ -1.5
SEC4	YFL005W	ATG3	P40344	310 aa		5.71	□□□□□ -1.5
SEC4	YFL005W	HDA3	Q06623	655 aa		5.7	□□□□□ -1.5
SEC4	YFL005W	MCA1	Q08601	432 aa		5.7	□□□□□ -1.5
SEC4	YFL005W	PSH1	Q12161	406 aa		5.7	□□□□□ -1.5
SEC4	YFL005W	PDC6	P26263	563 aa	Known RBP	5.69	□□□□□ -1.5
SEC4	YFL005W	TTI1	P36097	1038 aa		5.69	□□□□□ -1.5
SEC4	YFL005W	SPR3	P41901	512 aa		5.69	□□□□□ -1.5
SEC4	YFL005W	YPP1	P46951	817 aa		5.69	□□□□□ -1.5
SEC4	YFL005W	SUB2	Q07478	446 aa	Known RBP	5.69	□□□□□ -1.5
SEC4	YFL005W	SSA4	P22202	642 aa	Known RBP	5.68	□□□□□ -1.5
SEC4	YFL005W	CPS1	P27614	576 aa		5.68	□□□□□ -1.5
SEC4	YFL005W	PEP12	P32854	288 aa		5.68	□□□□□ -1.5
SEC4	YFL005W	SOH1	P38633	127 aa		5.68	□□□□□ -1.5
SEC4	YFL005W	TY1A-DR2	Q03964	440 aa	Known RBP	5.68	□□□□□ -1.5
SEC4	YFL005W	STB3	Q12427	513 aa		5.68	□□□□□ -1.5
SEC4	YFL005W	RPP1A	P05318	106 aa	Predicted RBP	5.66	□□□□□ -1.5
SEC4	YFL005W	RPS31	P05759	152 aa	Known RBP	5.66	□□□□□ -1.5
SEC4	YFL005W	MAC1	P35192	417 aa		5.66	□□□□□ -1.5
SEC4	YFL005W	SIS2	P36024	562 aa		5.65	□□□□□ -1.5
SEC4	YFL005W	YPL034W	Q03083	165 aa		5.65	□□□□□ -1.5
SEC4	YFL005W	SSA1	P10591	642 aa	Known RBP	5.64	□□□□□ -1.51
SEC4	YFL005W	KTR7	P40504	517 aa		5.64	□□□□□ -1.51
SEC4	YFL005W	GLT1	Q12680	2145 aa	Known RBP	5.63	□□□□□ -1.51
SEC4	YFL005W	LEU1	P07264	779 aa	Known RBP	5.63	□□□□□ -1.51
SEC4	YFL005W	PRY1	P47032	299 aa		5.63	□□□□□ -1.51
SEC4	YFL005W	YPQ2	Q06328	317 aa		5.62	□□□□□ -1.51
SEC4	YFL005W	TGL4	P36165	910 aa		5.61	□□□□□ -1.51
SEC4	YFL005W	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	5.61	□□□□□ -1.51	not detected
SEC4	YFL005W	SWI5	P08153	709 aa		5.6	□□□□□ -1.51
SEC4	YFL005W	PUP1	P25043	261 aa		5.6	□□□□□ -1.51
SEC4	YFL005W	GEF1	P37020	779 aa		5.6	□□□□□ -1.51
SEC4	YFL005W	TPS3	P38426	1054 aa	Known RBP	5.6	□□□□□ -1.51
SEC4	YFL005W	MSC7	P38694	644 aa		5.6	□□□□□ -1.51
SEC4	YFL005W	YML083C	Q04526	418 aa		5.6	□□□□□ -1.51
SEC4	YFL005W	NOB1	Q08444	459 aa	Known RBP	5.6	□□□□□ -1.51
SEC4	YFL005W	ALO1	P54783	526 aa	Known RBP	5.59	□□□□□ -1.51
SEC4	YFL005W	RGP1	P16664	663 aa		5.58	□□□□□ -1.52
SEC4	YFL005W	NHA1	Q99271	985 aa		5.58	□□□□□ -1.52
SEC4	YFL005W	YTA6	P40328	754 aa		5.57	□□□□□ -1.52
SEC4	YFL005W	IRC24	P40580	263 aa		5.57	□□□□□ -1.52
SEC4	YFL005W	ALD2	P47771	506 aa		5.57	□□□□□ -1.52
SEC4	YFL005W	ECM23	Q02710	187 aa		5.57	□□□□□ -1.52
SEC4	YFL005W	MCM1	P11746	286 aa		5.56	□□□□□ -1.52
SEC4	YFL005W	PDI1	P17967	522 aa	Known RBP	5.56	□□□□□ -1.52
SEC4	YFL005W	OMA1	P36163	345 aa		5.56	□□□□□ -1.52
SEC4	YFL005W	INP52	P50942	1183 aa		5.56	□□□□□ -1.52
SEC4	YFL005W	ACS2	P52910	683 aa	Known RBP	5.56	□□□□□ -1.52

Retrieved 100 of 5,963 RNA–protein pairs in 56.4 ms