RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C UTP13Q05946 817 aaKnown RBP3.63□□□□□ -1.83
VPS54YDR027C PKC1P24583 1151 aa3.62□□□□□ -1.83
VPS54YDR027C SLA1P32790 1244 aa3.62□□□□□ -1.83
VPS54YDR027C KRE33P53914 1056 aaKnown RBP3.62□□□□□ -1.83
VPS54YDR027C ADE12P80210 433 aaKnown RBP3.62□□□□□ -1.83
VPS54YDR027C TY1A-DR3Q12441 440 aa3.62□□□□□ -1.83
VPS54YDR027C BIO2P32451 375 aa3.61□□□□□ -1.83
VPS54YDR027C SUM1P46676 1062 aa3.61□□□□□ -1.83
VPS54YDR027C SYT1Q06836 1226 aa3.61□□□□□ -1.83
VPS54YDR027C HDA3Q06623 655 aa3.61□□□□□ -1.83
VPS54YDR027C YDR461C-AQ2V2P7 80 aa3.61□□□□□ -1.83
VPS54YDR027C SLX8P40072 274 aa3.6□□□□□ -1.83
VPS54YDR027C YNL108CP53929 270 aa3.6□□□□□ -1.83
VPS54YDR027C ENO2P00925 437 aaKnown RBP3.59□□□□□ -1.83
VPS54YDR027C SUP45P12385 437 aaKnown RBP3.59□□□□□ -1.83
VPS54YDR027C JJJ2P46997 583 aa3.59□□□□□ -1.83
VPS54YDR027C YFL066CP43538 392 aa3.59□□□□□ -1.83
VPS54YDR027C IRE1P32361 1115 aa3.58□□□□□ -1.84
VPS54YDR027C CBC2Q08920 208 aaKnown RBP RIP-Chip data3.57□□□□□ -1.84not detected
VPS54YDR027C YPR053CQ6Q5F3 151 aa3.57□□□□□ -1.84
VPS54YDR027C FPS1P23900 669 aa3.57□□□□□ -1.84
VPS54YDR027C YJL007CP47080 104 aa3.57□□□□□ -1.84
VPS54YDR027C RIM21P48565 533 aa3.57□□□□□ -1.84
VPS54YDR027C YFL034WP43564 1073 aa3.56□□□□□ -1.84
VPS54YDR027C SHM1P37292 490 aaPredicted RBP3.56□□□□□ -1.84
VPS54YDR027C MRPL16P38064 232 aa3.56□□□□□ -1.84
VPS54YDR027C AIM9P40053 627 aaKnown RBP3.56□□□□□ -1.84
VPS54YDR027C YNR014WP53719 212 aa3.56□□□□□ -1.84
VPS54YDR027C SWI5P08153 709 aa3.55□□□□□ -1.84
VPS54YDR027C PDC6P26263 563 aaKnown RBP3.55□□□□□ -1.84
VPS54YDR027C SBE2P42223 864 aaKnown RBP3.55□□□□□ -1.84
VPS54YDR027C CCT8P47079 568 aaKnown RBP3.55□□□□□ -1.84
VPS54YDR027C TDA6Q06466 467 aa3.55□□□□□ -1.84
VPS54YDR027C PSH1Q12161 406 aa3.55□□□□□ -1.84
VPS54YDR027C HGH1P48362 394 aaKnown RBP3.55□□□□□ -1.84
VPS54YDR027C STB3Q12427 513 aa3.55□□□□□ -1.84
VPS54YDR027C YMR187CQ03236 431 aa3.54□□□□□ -1.84
VPS54YDR027C GPM1P00950 247 aaKnown RBP3.54□□□□□ -1.84
VPS54YDR027C RPS6AP0CX37 236 aaKnown RBP3.54□□□□□ -1.84
VPS54YDR027C RPS6BP0CX38 236 aaPredicted RBP3.54□□□□□ -1.84
VPS54YDR027C RPL34BP40525 121 aaKnown RBP3.54□□□□□ -1.84
VPS54YDR027C YTA6P40328 754 aa3.53□□□□□ -1.84
VPS54YDR027C YPQ2Q06328 317 aa3.53□□□□□ -1.84
VPS54YDR027C RDS2P19541 446 aaKnown RBP3.53□□□□□ -1.84
VPS54YDR027C NTH2P35172 780 aa3.52□□□□□ -1.85
VPS54YDR027C MET1P36150 593 aa3.52□□□□□ -1.85
VPS54YDR027C BOI2P39969 1040 aa3.52□□□□□ -1.85
VPS54YDR027C RPP1AP05318 106 aaPredicted RBP3.52□□□□□ -1.85
VPS54YDR027C SBP1P10080 294 aaKnown RBP3.52□□□□□ -1.85
VPS54YDR027C MCM1P11746 286 aa3.52□□□□□ -1.85
VPS54YDR027C MCX1P38323 520 aaPredicted RBP3.52□□□□□ -1.85
VPS54YDR027C RPS31P05759 152 aaKnown RBP3.51□□□□□ -1.85
VPS54YDR027C SKN7P38889 622 aa3.51□□□□□ -1.85
VPS54YDR027C BIM1P40013 344 aa3.51□□□□□ -1.85
VPS54YDR027C ENO1P00924 437 aaKnown RBP3.51□□□□□ -1.85
VPS54YDR027C LEU1P07264 779 aaKnown RBP3.51□□□□□ -1.85
VPS54YDR027C SPR3P41901 512 aa3.51□□□□□ -1.85
VPS54YDR027C MRX10Q05648 414 aa3.51□□□□□ -1.85
VPS54YDR027C PDI1P17967 522 aaKnown RBP3.5□□□□□ -1.85
VPS54YDR027C KNS1P32350 737 aaPredicted RBP3.5□□□□□ -1.85
VPS54YDR027C RTG2P32608 588 aaKnown RBP3.5□□□□□ -1.85
VPS54YDR027C TIF1P10081 395 aaKnown RBP3.5□□□□□ -1.85
VPS54YDR027C PDC5P16467 563 aaKnown RBP3.5□□□□□ -1.85
VPS54YDR027C ATG32P40458 529 aa3.5□□□□□ -1.85
VPS54YDR027C TSC13Q99190 310 aa3.5□□□□□ -1.85
VPS54YDR027C TY1A-DR2Q03964 440 aaKnown RBP3.49□□□□□ -1.85
VPS54YDR027C RGP1P16664 663 aa3.49□□□□□ -1.85
VPS54YDR027C NRD1P53617 575 aaKnown RBP RIP-Chip data3.49□□□□□ -1.85not detected
VPS54YDR027C CYT1P07143 309 aa3.48□□□□□ -1.85
VPS54YDR027C MLF3P32047 452 aa3.48□□□□□ -1.85
VPS54YDR027C ALD2P47771 506 aa3.48□□□□□ -1.85
VPS54YDR027C YNL165WP53891 406 aa3.48□□□□□ -1.85
VPS54YDR027C Q0182Q9ZZW1 134 aa3.48□□□□□ -1.85
VPS54YDR027C YCK2P23292 546 aaKnown RBP3.47□□□□□ -1.85
VPS54YDR027C YDR215CQ12240 137 aa3.47□□□□□ -1.85
VPS54YDR027C PEP12P32854 288 aa3.46□□□□□ -1.86
VPS54YDR027C TAT1P38085 619 aa3.46□□□□□ -1.86
VPS54YDR027C KTR7P40504 517 aa3.46□□□□□ -1.86
VPS54YDR027C MSC7P38694 644 aa3.46□□□□□ -1.86
VPS54YDR027C SLN1P39928 1220 aaPredicted RBP3.46□□□□□ -1.86
VPS54YDR027C MTO1P53070 669 aa3.46□□□□□ -1.86
VPS54YDR027C PHO87P25360 923 aa3.45□□□□□ -1.86
VPS54YDR027C HEH2Q03281 663 aa3.45□□□□□ -1.86
VPS54YDR027C HAP4P14064 554 aa3.45□□□□□ -1.86
VPS54YDR027C ACS2P52910 683 aaKnown RBP3.45□□□□□ -1.86
VPS54YDR027C GAS4Q08271 471 aa3.44□□□□□ -1.86
VPS54YDR027C SIS2P36024 562 aa3.44□□□□□ -1.86
VPS54YDR027C AMN1P38285 549 aaPredicted RBP3.44□□□□□ -1.86
VPS54YDR027C LSB6P42951 607 aa3.44□□□□□ -1.86
VPS54YDR027C UTP4Q06679 776 aaKnown RBP3.44□□□□□ -1.86
VPS54YDR027C MCA1Q08601 432 aa3.44□□□□□ -1.86
VPS54YDR027C SCD5P34758 872 aa3.43□□□□□ -1.86
VPS54YDR027C NCL1P38205 684 aaKnown RBP3.43□□□□□ -1.86
VPS54YDR027C PRY1P47032 299 aa3.43□□□□□ -1.86
VPS54YDR027C NHA1Q99271 985 aa3.43□□□□□ -1.86
VPS54YDR027C UBP1P25037 809 aa3.42□□□□□ -1.86
VPS54YDR027C ALG14P38242 237 aa3.42□□□□□ -1.86
VPS54YDR027C KAP122P32767 1081 aa3.42□□□□□ -1.86
VPS54YDR027C TPS3P38426 1054 aaKnown RBP3.42□□□□□ -1.86
VPS54YDR027C PGM2P37012 569 aaKnown RBP3.41□□□□□ -1.86
Retrieved 100 of 5,963 RNA–protein pairs in 73.6 ms