RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 GABPB1Q06547 395 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-220ENST00000641603 RUFY1Q96T51 708 aa5.66□□□□□ -1.5
SCN1A-220ENST00000641603 MCM4P33991 863 aa5.65□□□□□ -1.5
SCN1A-220ENST00000641603 HSP90B1P14625 803 aaKnown RBP5.65□□□□□ -1.5
SCN1A-220ENST00000641603 MYO6Q9UM54 1294 aa5.65□□□□□ -1.5
SCN1A-220ENST00000641603 IVLP07476 585 aa5.65□□□□□ -1.5
SCN1A-220ENST00000641603 TTLL5Q6EMB2 1281 aa5.65□□□□□ -1.51
SCN1A-220ENST00000641603 IQCEQ6IPM2 695 aa5.65□□□□□ -1.51
SCN1A-220ENST00000641603 CLUAP1Q96AJ1 413 aa5.65□□□□□ -1.51
SCN1A-220ENST00000641603 IFT57Q9NWB7 429 aa5.65□□□□□ -1.51
SCN1A-220ENST00000641603 EXOC6Q8TAG9 804 aa5.65□□□□□ -1.51
SCN1A-220ENST00000641603 HIRIP3Q9BW71 556 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-220ENST00000641603 ERICH3Q5RHP9 1530 aa5.65□□□□□ -1.51
SCN1A-220ENST00000641603 ZKSCAN2Q63HK3 967 aa5.64□□□□□ -1.51
SCN1A-220ENST00000641603 FILIP1Q7Z7B0 1213 aa5.64□□□□□ -1.51
SCN1A-220ENST00000641603 PIP4K2AP48426 406 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-220ENST00000641603 AKNAQ7Z591 1439 aa5.64□□□□□ -1.51
SCN1A-220ENST00000641603 GIMAP7Q8NHV1 300 aa5.64□□□□□ -1.51
SCN1A-220ENST00000641603 FRAT2O75474 233 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-220ENST00000641603 UTP14CQ5TAP6 766 aaKnown RBP5.64□□□□□ -1.51
SCN1A-220ENST00000641603 INTS3Q68E01 1043 aaKnown RBP5.64□□□□□ -1.51
SCN1A-220ENST00000641603 U2SURPO15042 1029 aaKnown RBP5.64□□□□□ -1.51
SCN1A-220ENST00000641603 NEFHP12036 1026 aa5.64□□□□□ -1.51
SCN1A-220ENST00000641603 UVSSAQ2YD98 709 aa5.64□□□□□ -1.51
SCN1A-220ENST00000641603 RUFY2Q8WXA3 655 aa5.64□□□□□ -1.51
SCN1A-220ENST00000641603 RRP7BPQ9NSQ0 103 aa5.64□□□□□ -1.51
SCN1A-220ENST00000641603 ITPRIPQ8IWB1 547 aa5.64□□□□□ -1.51
SCN1A-220ENST00000641603 V9GYY5 206 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-220ENST00000641603 ZMYM3Q14202 1370 aa5.64□□□□□ -1.51
SCN1A-220ENST00000641603 BBXQ8WY36 941 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-220ENST00000641603 CFDP1Q9UEE9 299 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-220ENST00000641603 ZNF777Q9ULD5 760 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-220ENST00000641603 MSH5O43196 834 aa5.63□□□□□ -1.51
SCN1A-220ENST00000641603 HOMER1Q86YM7 354 aa5.63□□□□□ -1.51
SCN1A-220ENST00000641603 CHIC2Q9UKJ5 165 aa5.63□□□□□ -1.51
SCN1A-220ENST00000641603 WWC1Q8IX03 1113 aa5.63□□□□□ -1.51
SCN1A-220ENST00000641603 TUBBP07437 444 aa5.63□□□□□ -1.51
SCN1A-220ENST00000641603 RSPH4AQ5TD94 716 aa5.63□□□□□ -1.51
SCN1A-220ENST00000641603 PAK3O75914 559 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-220ENST00000641603 GNL2Q13823 731 aaKnown RBP5.63□□□□□ -1.51
SCN1A-220ENST00000641603 JAKMIP3Q5VZ66 844 aa5.63□□□□□ -1.51
SCN1A-220ENST00000641603 KANK1Q14678 1352 aa5.63□□□□□ -1.51
SCN1A-220ENST00000641603 OFD1O75665 1012 aa5.63□□□□□ -1.51
SCN1A-220ENST00000641603 PAXBP1Q9Y5B6 917 aa5.63□□□□□ -1.51
SCN1A-220ENST00000641603 CDC45O75419 566 aa5.63□□□□□ -1.51
SCN1A-220ENST00000641603 CCDC192P0DO97 292 aa5.63□□□□□ -1.51
SCN1A-220ENST00000641603 MICALCLQ6ZW33 695 aa5.63□□□□□ -1.51
SCN1A-220ENST00000641603 ARID3AQ99856 593 aa5.63□□□□□ -1.51
SCN1A-220ENST00000641603 SOGA1O94964 1423 aa5.63□□□□□ -1.51
SCN1A-220ENST00000641603 RRP12Q5JTH9 1297 aaKnown RBP5.62□□□□□ -1.51
SCN1A-220ENST00000641603 LRRFIP1Q32MZ4 808 aaKnown RBP5.62□□□□□ -1.51
SCN1A-220ENST00000641603 POLA1P09884 1462 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-220ENST00000641603 USP47Q96K76 1375 aa5.62□□□□□ -1.51
SCN1A-220ENST00000641603 MORC1Q86VD1 984 aa5.62□□□□□ -1.51
SCN1A-220ENST00000641603 KDM2AQ9Y2K7 1162 aa5.62□□□□□ -1.51
SCN1A-220ENST00000641603 KRT222Q8N1A0 295 aa5.62□□□□□ -1.51
SCN1A-220ENST00000641603 NEXNQ0ZGT2 675 aa5.62□□□□□ -1.51
SCN1A-220ENST00000641603 TPD52L1Q16890 204 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-220ENST00000641603 ZNF428Q96B54 188 aa5.62□□□□□ -1.51
SCN1A-220ENST00000641603 SMC4Q9NTJ3 1288 aa5.62□□□□□ -1.51
SCN1A-220ENST00000641603 GOLGA6L10A6NI86 522 aa5.62□□□□□ -1.51
SCN1A-220ENST00000641603 CRBNQ96SW2 442 aa5.61□□□□□ -1.51
SCN1A-220ENST00000641603 A6NNZ2 444 aa5.61□□□□□ -1.51
SCN1A-220ENST00000641603 TUBB8Q3ZCM7 444 aa5.61□□□□□ -1.51
SCN1A-220ENST00000641603 MAP9Q49MG5 647 aa5.61□□□□□ -1.51
SCN1A-220ENST00000641603 GOLGA6L9A6NEM1 432 aa5.61□□□□□ -1.51
SCN1A-220ENST00000641603 BMS1Q14692 1282 aaKnown RBP5.61□□□□□ -1.51
SCN1A-220ENST00000641603 P3H3Q8IVL6 736 aa5.61□□□□□ -1.51
SCN1A-220ENST00000641603 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-220ENST00000641603 GBP2P32456 591 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-220ENST00000641603 SETSIPP0DME0 302 aa5.61□□□□□ -1.51
SCN1A-220ENST00000641603 CCDC91Q7Z6B0 441 aa5.61□□□□□ -1.51
SCN1A-220ENST00000641603 KIAA1328Q86T90 577 aa5.61□□□□□ -1.51
SCN1A-220ENST00000641603 LUZP1Q86V48 1076 aa5.61□□□□□ -1.51
SCN1A-220ENST00000641603 OS9Q13438 667 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-220ENST00000641603 KLHL40Q2TBA0 621 aa5.61□□□□□ -1.51
SCN1A-220ENST00000641603 TMCO3Q6UWJ1 677 aa5.61□□□□□ -1.51
SCN1A-220ENST00000641603 SPRYD3Q8NCJ5 442 aa5.61□□□□□ -1.51
SCN1A-220ENST00000641603 WDR33Q9C0J8 1336 aaKnown RBP5.6□□□□□ -1.51
SCN1A-220ENST00000641603 SRRTQ9BXP5 876 aaKnown RBP5.6□□□□□ -1.51
SCN1A-220ENST00000641603 SH3BGRP55822 239 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-220ENST00000641603 CCDC73Q6ZRK6 1079 aa5.6□□□□□ -1.51
SCN1A-220ENST00000641603 MPHOSPH9Q99550 1183 aa5.6□□□□□ -1.51
SCN1A-220ENST00000641603 INSRP06213 1382 aa5.6□□□□□ -1.51
SCN1A-220ENST00000641603 AEBP1Q8IUX7 1158 aa5.6□□□□□ -1.51
SCN1A-220ENST00000641603 HOMEZQ8IX15 550 aa5.6□□□□□ -1.51
SCN1A-220ENST00000641603 SMARCA2P51531 1590 aa5.6□□□□□ -1.51
SCN1A-220ENST00000641603 SHTN1A0MZ66 631 aa5.6□□□□□ -1.51
SCN1A-220ENST00000641603 CBFA2T2O43439 604 aa5.6□□□□□ -1.51
SCN1A-220ENST00000641603 API5Q9BZZ5 524 aaKnown RBP5.6□□□□□ -1.51
SCN1A-220ENST00000641603 PLEKHD1A6NEE1 506 aa5.6□□□□□ -1.51
SCN1A-220ENST00000641603 GOLGA6L10A0A0M3HER8 536 aa5.6□□□□□ -1.51
SCN1A-220ENST00000641603 ZKSCAN1P17029 563 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-220ENST00000641603 CARMIL1Q5VZK9 1371 aa5.6□□□□□ -1.51
SCN1A-220ENST00000641603 MAP3K1Q13233 1512 aa5.6□□□□□ -1.51
SCN1A-220ENST00000641603 CCDC88BA6NC98 1476 aa5.6□□□□□ -1.51
SCN1A-220ENST00000641603 PAIP2Q9BPZ3 127 aaKnown RBP5.6□□□□□ -1.51
SCN1A-220ENST00000641603 DZIP1LQ8IYY4 767 aaKnown RBP5.59□□□□□ -1.51
SCN1A-220ENST00000641603 STK11IPQ8N1F8 1099 aa5.59□□□□□ -1.51
SCN1A-220ENST00000641603 GCC1Q96CN9 775 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 162.5 ms