RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.71■□□□□ 0.75
CLN3-253ENST00000636977 SCAPERQ9BY12 1400 aa19.71■□□□□ 0.75
CLN3-253ENST00000636977 CEP152O94986 1710 aa19.7■□□□□ 0.74
CLN3-253ENST00000636977 ZMYM4Q5VZL5 1548 aa19.7■□□□□ 0.74
CLN3-253ENST00000636977 ANP32AP39687 249 aaKnown RBP19.69■□□□□ 0.74
CLN3-253ENST00000636977 NPM2Q86SE8 214 aaKnown RBP19.69■□□□□ 0.74
CLN3-253ENST00000636977 IPO9Q96P70 1041 aaKnown RBP19.69■□□□□ 0.74
CLN3-253ENST00000636977 FANCAO15360 1455 aa19.69■□□□□ 0.74
CLN3-253ENST00000636977 RTN4Q9NQC3 1192 aaKnown RBP19.68■□□□□ 0.74
CLN3-253ENST00000636977 ADGRF5Q8IZF2 1346 aa19.68■□□□□ 0.74
CLN3-253ENST00000636977 WDR43Q15061 677 aaKnown RBP eCLIP19.68■□□□□ 0.74
CLN3-253ENST00000636977 CCDC146Q8IYE0 955 aa19.68■□□□□ 0.74
CLN3-253ENST00000636977 ATP7AQ04656 1500 aa19.68■□□□□ 0.74
CLN3-253ENST00000636977 DEPDC5O75140 1603 aa19.67■□□□□ 0.74
CLN3-253ENST00000636977 INSRP06213 1382 aa19.66■□□□□ 0.74
CLN3-253ENST00000636977 TET3O43151 1660 aa19.65■□□□□ 0.74
CLN3-253ENST00000636977 PDE4AP27815 886 aa19.65■□□□□ 0.74
CLN3-253ENST00000636977 DUSP27Q5VZP5 1158 aa19.65■□□□□ 0.74
CLN3-253ENST00000636977 MYOM1P52179 1685 aa19.65■□□□□ 0.74
CLN3-253ENST00000636977 KANK1Q14678 1352 aa19.64■□□□□ 0.74
CLN3-253ENST00000636977 TCERG1O14776 1098 aaKnown RBP19.64■□□□□ 0.73
CLN3-253ENST00000636977 SYNMO15061 1565 aa19.64■□□□□ 0.73
CLN3-253ENST00000636977 INO80Q9ULG1 1556 aaPredicted RBP19.63■□□□□ 0.73
CLN3-253ENST00000636977 ASXL1Q8IXJ9 1541 aa19.63■□□□□ 0.73
CLN3-253ENST00000636977 CDCA8Q53HL2 280 aa19.63■□□□□ 0.73
CLN3-253ENST00000636977 ADGRL1O94910 1474 aa19.63■□□□□ 0.73
CLN3-253ENST00000636977 ARAP3Q8WWN8 1544 aa19.62■□□□□ 0.73
CLN3-253ENST00000636977 VWDEQ8N2E2 1590 aa19.62■□□□□ 0.73
CLN3-253ENST00000636977 CARD14Q9BXL6 1004 aa19.62■□□□□ 0.73
CLN3-253ENST00000636977 SPINK5Q9NQ38 1064 aaPredicted RBP19.62■□□□□ 0.73
CLN3-253ENST00000636977 ABCA9Q8IUA7 1624 aa19.61■□□□□ 0.73
CLN3-253ENST00000636977 ZNF521Q96K83 1311 aa19.61■□□□□ 0.73
CLN3-253ENST00000636977 ZBTB47Q9UFB7 747 aaPredicted RBP19.61■□□□□ 0.73
CLN3-253ENST00000636977 MROH1Q8NDA8 1641 aa19.61■□□□□ 0.73
CLN3-253ENST00000636977 BACH2Q9BYV9 841 aa19.6■□□□□ 0.73
CLN3-253ENST00000636977 ERVK-7P63135 1459 aa19.59■□□□□ 0.73
CLN3-253ENST00000636977 GOLGA2Q08379 1002 aa19.59■□□□□ 0.73
CLN3-253ENST00000636977 APAF1O14727 1248 aa19.58■□□□□ 0.73
CLN3-253ENST00000636977 CHGAP10645 457 aaKnown RBP19.58■□□□□ 0.73
CLN3-253ENST00000636977 STAC3Q96MF2 364 aa19.58■□□□□ 0.73
CLN3-253ENST00000636977 ABCA6Q8N139 1617 aa19.58■□□□□ 0.73
CLN3-253ENST00000636977 EIF3AQ14152 1382 aaKnown RBP19.58■□□□□ 0.72
CLN3-253ENST00000636977 DMRT2Q9Y5R5 561 aa19.56■□□□□ 0.72
CLN3-253ENST00000636977 PIK3C2GO75747 1445 aa19.56■□□□□ 0.72
CLN3-253ENST00000636977 ASXL2Q76L83 1435 aa19.56■□□□□ 0.72
CLN3-253ENST00000636977 MAP3K4Q9Y6R4 1608 aa19.55■□□□□ 0.72
CLN3-253ENST00000636977 SLFN5Q08AF3 891 aa19.55■□□□□ 0.72
CLN3-253ENST00000636977 KDM5AP29375 1690 aaKnown RBP19.55■□□□□ 0.72
CLN3-253ENST00000636977 MROH2AA6NES4 1674 aa19.54■□□□□ 0.72
CLN3-253ENST00000636977 MS4A1P11836 297 aa19.53■□□□□ 0.72
CLN3-253ENST00000636977 CFAP65Q6ZU64 1925 aaKnown RBP19.53■□□□□ 0.72
CLN3-253ENST00000636977 TRAK1Q9UPV9 953 aa19.53■□□□□ 0.72
CLN3-253ENST00000636977 PPRC1Q5VV67 1664 aaKnown RBP19.52■□□□□ 0.72
CLN3-253ENST00000636977 NOS1P29475 1434 aa19.52■□□□□ 0.72
CLN3-253ENST00000636977 KIDINS220Q9ULH0 1771 aa19.52■□□□□ 0.71
CLN3-253ENST00000636977 NPC1L1Q9UHC9 1359 aa19.52■□□□□ 0.71
CLN3-253ENST00000636977 KIAA1210Q9ULL0 1709 aa19.52■□□□□ 0.71
CLN3-253ENST00000636977 KDM2BQ8NHM5 1336 aa19.51■□□□□ 0.71
CLN3-253ENST00000636977 TNNT2P45379 298 aaPredicted RBP19.51■□□□□ 0.71
CLN3-253ENST00000636977 EFCAB6Q5THR3 1501 aa19.51■□□□□ 0.71
CLN3-253ENST00000636977 TMEM132EQ6IEE7 984 aa19.51■□□□□ 0.71
CLN3-253ENST00000636977 IL27Q8NEV9 243 aa19.51■□□□□ 0.71
CLN3-253ENST00000636977 MYOM2P54296 1465 aa19.51■□□□□ 0.71
CLN3-253ENST00000636977 BCAR3O75815 825 aa19.5■□□□□ 0.71
CLN3-253ENST00000636977 GGT6Q6P531 493 aa19.5■□□□□ 0.71
CLN3-253ENST00000636977 KIF1BO60333 1816 aa19.5■□□□□ 0.71
CLN3-253ENST00000636977 TRMT2AQ8IZ69 625 aaKnown RBP19.49■□□□□ 0.71
CLN3-253ENST00000636977 NUTM2DQ5VT03 806 aaPredicted RBP19.49■□□□□ 0.71
CLN3-253ENST00000636977 SLC12A5Q9H2X9 1139 aa19.48■□□□□ 0.71
CLN3-253ENST00000636977 SENP3Q9H4L4 574 aaPredicted RBP19.48■□□□□ 0.71
CLN3-253ENST00000636977 LAS1LQ9Y4W2 734 aaKnown RBP19.47■□□□□ 0.71
CLN3-253ENST00000636977 IFT172Q9UG01 1749 aa19.47■□□□□ 0.71
CLN3-253ENST00000636977 CENPJQ9HC77 1338 aaPredicted RBP19.46■□□□□ 0.71
CLN3-253ENST00000636977 UBE2Q2Q8WVN8 375 aa19.46■□□□□ 0.71
CLN3-253ENST00000636977 NEURL4Q96JN8 1562 aa19.45■□□□□ 0.7
CLN3-253ENST00000636977 NRXN1Q9ULB1 1477 aa19.44■□□□□ 0.7
CLN3-253ENST00000636977 NPATQ14207 1427 aa19.44■□□□□ 0.7
CLN3-253ENST00000636977 NEUROD2Q15784 382 aa19.44■□□□□ 0.7
CLN3-253ENST00000636977 RRP7AQ9Y3A4 280 aaKnown RBP19.43■□□□□ 0.7
CLN3-253ENST00000636977 NSD3Q9BZ95 1437 aa19.43■□□□□ 0.7
CLN3-253ENST00000636977 CENPQQ7L2Z9 268 aaPredicted RBP19.42■□□□□ 0.7
CLN3-253ENST00000636977 NKTRP30414 1462 aaKnown RBP19.42■□□□□ 0.7
CLN3-253ENST00000636977 ZNF518AQ6AHZ1 1483 aa19.42■□□□□ 0.7
CLN3-253ENST00000636977 ADGRB3O60242 1522 aa19.41■□□□□ 0.7
CLN3-253ENST00000636977 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.41■□□□□ 0.7
CLN3-253ENST00000636977 C14orf93Q9H972 538 aaKnown RBP19.41■□□□□ 0.7
CLN3-253ENST00000636977 RGS3P49796 1198 aa19.4■□□□□ 0.7
CLN3-253ENST00000636977 MORC1Q86VD1 984 aa19.4■□□□□ 0.7
CLN3-253ENST00000636977 FRMPD1Q5SYB0 1578 aa19.39■□□□□ 0.7
CLN3-253ENST00000636977 E9PSI1 815 aa19.39■□□□□ 0.7
CLN3-253ENST00000636977 SLC4A3P48751 1232 aa19.39■□□□□ 0.7
CLN3-253ENST00000636977 WWC1Q8IX03 1113 aa19.39■□□□□ 0.7
CLN3-253ENST00000636977 EIF5BO60841 1220 aaKnown RBP19.39■□□□□ 0.69
CLN3-253ENST00000636977 LMTK2Q8IWU2 1503 aa19.38■□□□□ 0.69
CLN3-253ENST00000636977 MYO3AQ8NEV4 1616 aa19.38■□□□□ 0.69
CLN3-253ENST00000636977 SBNO2Q9Y2G9 1366 aa19.37■□□□□ 0.69
CLN3-253ENST00000636977 RAPGEF3O95398 923 aa19.37■□□□□ 0.69
CLN3-253ENST00000636977 CD109Q6YHK3 1445 aa19.37■□□□□ 0.69
CLN3-253ENST00000636977 SLC24A1O60721 1099 aa19.37■□□□□ 0.69
CLN3-253ENST00000636977 RTL5Q5HYW3 569 aaPredicted RBP19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms