RNA–Protein interactions for RNA: ENST00000621856.1

SPAST-204, Transcript of spastin, humanhuman

TSL 1 (best) BASIC

Gene SPAST, Length 1,715 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-204ENST00000621856 ANP32CO43423 234 aa29.86■■■□□ 2.37
SPAST-204ENST00000621856 ESF1Q9H501 851 aaKnown RBP29.86■■■□□ 2.37
SPAST-204ENST00000621856 RPGRIP1LQ68CZ1 1315 aa29.84■■■□□ 2.37
SPAST-204ENST00000621856 ADGRF5Q8IZF2 1346 aa29.84■■■□□ 2.37
SPAST-204ENST00000621856 IDI1Q13907 227 aa29.84■■■□□ 2.37
SPAST-204ENST00000621856 FBXO31Q5XUX0 539 aaPredicted RBP29.84■■■□□ 2.37
SPAST-204ENST00000621856 NRXN1Q9ULB1 1477 aa29.82■■■□□ 2.36
SPAST-204ENST00000621856 POLR3GLQ9BT43 218 aa29.82■■■□□ 2.36
SPAST-204ENST00000621856 IQGAP1P46940 1657 aa29.81■■■□□ 2.36
SPAST-204ENST00000621856 MYO5BQ9ULV0 1848 aa29.78■■■□□ 2.36
SPAST-204ENST00000621856 SPATA31D1Q6ZQQ2 1576 aa29.77■■■□□ 2.36
SPAST-204ENST00000621856 TMEM131LA2VDJ0 1609 aa29.77■■■□□ 2.36
SPAST-204ENST00000621856 SCAF11Q99590 1463 aaKnown RBP29.76■■■□□ 2.35
SPAST-204ENST00000621856 CFAP70Q5T0N1 1121 aa29.76■■■□□ 2.35
SPAST-204ENST00000621856 YTHDC1Q96MU7 727 aaKnown RBP29.76■■■□□ 2.35
SPAST-204ENST00000621856 NEXMIFQ5QGS0 1516 aa29.75■■■□□ 2.35
SPAST-204ENST00000621856 ZMYM3Q14202 1370 aa29.72■■■□□ 2.35
SPAST-204ENST00000621856 PIK3C2GO75747 1445 aa29.72■■■□□ 2.35
SPAST-204ENST00000621856 VGFO15240 615 aaPredicted RBP29.7■■■□□ 2.34
SPAST-204ENST00000621856 STAG3Q9UJ98 1225 aa29.69■■■□□ 2.34
SPAST-204ENST00000621856 EIF3AQ14152 1382 aaKnown RBP29.69■■■□□ 2.34
SPAST-204ENST00000621856 TESK2Q96S53 571 aa29.68■■■□□ 2.34
SPAST-204ENST00000621856 SETBP1Q9Y6X0 1596 aa29.67■■■□□ 2.34
SPAST-204ENST00000621856 NUTM2DQ5VT03 806 aaPredicted RBP29.67■■■□□ 2.34
SPAST-204ENST00000621856 CCER2I3L3R5 266 aa29.65■■■□□ 2.34
SPAST-204ENST00000621856 CENPBP07199 599 aaPredicted RBP29.65■■■□□ 2.34
SPAST-204ENST00000621856 TMF1P82094 1093 aa29.65■■■□□ 2.34
SPAST-204ENST00000621856 C14orf93Q9H972 538 aaKnown RBP29.65■■■□□ 2.34
SPAST-204ENST00000621856 ZFYVE9O95405 1425 aa29.63■■■□□ 2.33
SPAST-204ENST00000621856 DISP3Q9P2K9 1392 aa29.62■■■□□ 2.33
SPAST-204ENST00000621856 A2ML1A8K2U0 1454 aa29.58■■■□□ 2.33
SPAST-204ENST00000621856 TNRQ92752 1358 aa29.58■■■□□ 2.33
SPAST-204ENST00000621856 FER1L4A9Z1Z3 1794 aa29.58■■■□□ 2.33
SPAST-204ENST00000621856 ADGRB1O14514 1584 aa29.57■■■□□ 2.32
SPAST-204ENST00000621856 MYO3AQ8NEV4 1616 aa29.54■■■□□ 2.32
SPAST-204ENST00000621856 TMEM132EQ6IEE7 984 aa29.52■■■□□ 2.32
SPAST-204ENST00000621856 PRKRIP1Q9H875 184 aaPredicted RBP29.52■■■□□ 2.32
SPAST-204ENST00000621856 C3P01024 1663 aa29.5■■■□□ 2.31
SPAST-204ENST00000621856 RIMS2Q9UQ26 1411 aa29.5■■■□□ 2.31
SPAST-204ENST00000621856 CDCA8Q53HL2 280 aa29.5■■■□□ 2.31
SPAST-204ENST00000621856 TRAK1Q9UPV9 953 aa29.5■■■□□ 2.31
SPAST-204ENST00000621856 SLC24A1O60721 1099 aa29.48■■■□□ 2.31
SPAST-204ENST00000621856 SENP3Q9H4L4 574 aaPredicted RBP29.48■■■□□ 2.31
SPAST-204ENST00000621856 CENPJQ9HC77 1338 aaPredicted RBP29.47■■■□□ 2.31
SPAST-204ENST00000621856 KDM5AP29375 1690 aaKnown RBP29.46■■■□□ 2.31
SPAST-204ENST00000621856 CEBPAP49715 358 aaPredicted RBP29.45■■■□□ 2.31
SPAST-204ENST00000621856 QRICH2Q9H0J4 1663 aa29.44■■■□□ 2.3
SPAST-204ENST00000621856 UBR1Q8IWV7 1749 aa29.43■■■□□ 2.3
SPAST-204ENST00000621856 ASXL1Q8IXJ9 1541 aa29.42■■■□□ 2.3
SPAST-204ENST00000621856 ALKQ9UM73 1620 aa29.42■■■□□ 2.3
SPAST-204ENST00000621856 ARHGEF28Q8N1W1 1705 aaKnown RBP29.42■■■□□ 2.3
SPAST-204ENST00000621856 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.42■■■□□ 2.3
SPAST-204ENST00000621856 SBNO2Q9Y2G9 1366 aa29.42■■■□□ 2.3
SPAST-204ENST00000621856 NLRP1Q9C000 1473 aa29.42■■■□□ 2.3
SPAST-204ENST00000621856 CNGB1Q14028 1251 aaPredicted RBP29.41■■■□□ 2.3
SPAST-204ENST00000621856 PLPPR3Q6T4P5 718 aa29.4■■■□□ 2.3
SPAST-204ENST00000621856 HDGFP51858 240 aaKnown RBP29.37■■■□□ 2.29
SPAST-204ENST00000621856 PANK3Q9H999 370 aa29.37■■■□□ 2.29
SPAST-204ENST00000621856 STK26Q9P289 416 aa29.35■■■□□ 2.29
SPAST-204ENST00000621856 MYOM1P52179 1685 aa29.34■■■□□ 2.29
SPAST-204ENST00000621856 RIMS1Q86UR5 1692 aaKnown RBP29.34■■■□□ 2.29
SPAST-204ENST00000621856 YTHDC2Q9H6S0 1430 aaKnown RBP29.33■■■□□ 2.29
SPAST-204ENST00000621856 TMEM2Q9UHN6 1383 aa29.32■■■□□ 2.28
SPAST-204ENST00000621856 SETD1AO15047 1707 aaKnown RBP29.3■■■□□ 2.28
SPAST-204ENST00000621856 KTN1Q86UP2 1357 aaKnown RBP29.3■■■□□ 2.28
SPAST-204ENST00000621856 PER1O15534 1290 aaPredicted RBP29.3■■■□□ 2.28
SPAST-204ENST00000621856 MRS2Q9HD23 443 aa29.3■■■□□ 2.28
SPAST-204ENST00000621856 CCDC184Q52MB2 194 aa29.29■■■□□ 2.28
SPAST-204ENST00000621856 NRXN3Q9Y4C0 1643 aa29.29■■■□□ 2.28
SPAST-204ENST00000621856 PTPRMP28827 1452 aa29.28■■■□□ 2.28
SPAST-204ENST00000621856 RALBP1Q15311 655 aa29.27■■■□□ 2.28
SPAST-204ENST00000621856 ADAMTSL3P82987 1691 aa29.25■■■□□ 2.27
SPAST-204ENST00000621856 BCANQ96GW7 911 aa29.24■■■□□ 2.27
SPAST-204ENST00000621856 SAFB2Q14151 953 aaKnown RBP eCLIP29.23■■■□□ 2.27
SPAST-204ENST00000621856 POGKQ9P215 609 aa29.23■■■□□ 2.27
SPAST-204ENST00000621856 EVC2Q86UK5 1308 aa29.22■■■□□ 2.27
SPAST-204ENST00000621856 LRPPRCP42704 1394 aaKnown RBP29.21■■■□□ 2.27
SPAST-204ENST00000621856 PRAM1Q96QH2 718 aa29.21■■■□□ 2.27
SPAST-204ENST00000621856 KNSTRNQ9Y448 316 aa29.21■■■□□ 2.27
SPAST-204ENST00000621856 TULP4Q9NRJ4 1543 aa29.2■■■□□ 2.27
SPAST-204ENST00000621856 MYBBP1AQ9BQG0 1328 aaKnown RBP29.2■■■□□ 2.27
SPAST-204ENST00000621856 PARD3Q8TEW0 1356 aa29.2■■■□□ 2.26
SPAST-204ENST00000621856 DLC1Q96QB1 1528 aa29.19■■■□□ 2.26
SPAST-204ENST00000621856 CC2D1BQ5T0F9 858 aaKnown RBP29.19■■■□□ 2.26
SPAST-204ENST00000621856 EID1Q9Y6B2 187 aa29.18■■■□□ 2.26
SPAST-204ENST00000621856 SLIT1O75093 1534 aa29.17■■■□□ 2.26
SPAST-204ENST00000621856 TXNDC2Q86VQ3 553 aa29.17■■■□□ 2.26
SPAST-204ENST00000621856 PLEKHG1Q9ULL1 1385 aa29.17■■■□□ 2.26
SPAST-204ENST00000621856 LTKP29376 864 aa29.16■■■□□ 2.26
SPAST-204ENST00000621856 THEMISQ8N1K5 641 aaPredicted RBP29.16■■■□□ 2.26
SPAST-204ENST00000621856 ARHGAP23Q9P227 1491 aa29.15■■■□□ 2.26
SPAST-204ENST00000621856 FAM9BQ8IZU0 186 aa29.15■■■□□ 2.26
SPAST-204ENST00000621856 PUS7Q96PZ0 661 aaKnown RBP29.15■■■□□ 2.26
SPAST-204ENST00000621856 METP08581 1390 aa29.15■■■□□ 2.26
SPAST-204ENST00000621856 ABCC11Q96J66 1382 aa29.14■■■□□ 2.26
SPAST-204ENST00000621856 MINK1Q8N4C8 1332 aaPredicted RBP29.14■■■□□ 2.26
SPAST-204ENST00000621856 TMC1Q8TDI8 760 aa29.14■■■□□ 2.25
SPAST-204ENST00000621856 CEP170BQ9Y4F5 1589 aaPredicted RBP29.13■■■□□ 2.25
SPAST-204ENST00000621856 KNDC1Q76NI1 1749 aa29.12■■■□□ 2.25
SPAST-204ENST00000621856 BRD4O60885 1362 aaPredicted RBP29.11■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms