RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 MTUS2Q5JR59 1369 aa6.15□□□□□ -1.42
VPS13D-214ENST00000620676 CWC15Q9P013 229 aaKnown RBP6.15□□□□□ -1.42
VPS13D-214ENST00000620676 CCDC94Q9BW85 323 aaPredicted RBP6.15□□□□□ -1.43
VPS13D-214ENST00000620676 U2AF1L5P0DN76 240 aaPredicted RBP6.15□□□□□ -1.43
VPS13D-214ENST00000620676 U2AF1Q01081 240 aaKnown RBP eCLIP6.15□□□□□ -1.434e-7■■■□□ 17.5
VPS13D-214ENST00000620676 TAF3Q5VWG9 929 aa6.15□□□□□ -1.43
VPS13D-214ENST00000620676 SSFA2P28290 1259 aa6.14□□□□□ -1.43
VPS13D-214ENST00000620676 MAPK8IP3Q9UPT6 1336 aa6.14□□□□□ -1.43
VPS13D-214ENST00000620676 ST18O60284 1047 aa6.14□□□□□ -1.43
VPS13D-214ENST00000620676 CHMP4CQ96CF2 233 aa6.14□□□□□ -1.43
VPS13D-214ENST00000620676 FMNL2Q96PY5 1086 aa6.14□□□□□ -1.43
VPS13D-214ENST00000620676 PANK3Q9H999 370 aa6.14□□□□□ -1.43
VPS13D-214ENST00000620676 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.14□□□□□ -1.43
VPS13D-214ENST00000620676 V9GYY5 206 aaPredicted RBP6.14□□□□□ -1.43
VPS13D-214ENST00000620676 GOLGA6L19H0YKK7 550 aa6.14□□□□□ -1.43
VPS13D-214ENST00000620676 PES1O00541 588 aaKnown RBP6.14□□□□□ -1.43
VPS13D-214ENST00000620676 CEBPZQ03701 1054 aaKnown RBP6.14□□□□□ -1.43
VPS13D-214ENST00000620676 SLC4A10Q6U841 1118 aa6.14□□□□□ -1.43
VPS13D-214ENST00000620676 RB1CC1Q8TDY2 1594 aa6.14□□□□□ -1.43
VPS13D-214ENST00000620676 C1orf115Q9H7X2 142 aa6.14□□□□□ -1.43
VPS13D-214ENST00000620676 DEF6Q9H4E7 631 aa6.13□□□□□ -1.43
VPS13D-214ENST00000620676 RDXP35241 583 aaKnown RBP6.13□□□□□ -1.43
VPS13D-214ENST00000620676 BECN2A8MW95 431 aa6.13□□□□□ -1.43
VPS13D-214ENST00000620676 H0YHG0 523 aa6.13□□□□□ -1.43
VPS13D-214ENST00000620676 MPHOSPH9Q99550 1183 aa6.13□□□□□ -1.43
VPS13D-214ENST00000620676 PDZRN3Q9UPQ7 1066 aa6.13□□□□□ -1.43
VPS13D-214ENST00000620676 CAMK4Q16566 473 aa6.13□□□□□ -1.43
VPS13D-214ENST00000620676 TBC1D2Q9BYX2 928 aa6.13□□□□□ -1.43
VPS13D-214ENST00000620676 CLCN1P35523 988 aa6.12□□□□□ -1.43
VPS13D-214ENST00000620676 DRC1Q96MC2 740 aa6.12□□□□□ -1.43
VPS13D-214ENST00000620676 RSPH4AQ5TD94 716 aa6.12□□□□□ -1.43
VPS13D-214ENST00000620676 TRMT1Q9NXH9 659 aaKnown RBP6.12□□□□□ -1.43
VPS13D-214ENST00000620676 SMC2O95347 1197 aa6.12□□□□□ -1.43
VPS13D-214ENST00000620676 TSPYL1Q9H0U9 437 aa6.12□□□□□ -1.43
VPS13D-214ENST00000620676 DYNC1I1O14576 645 aa6.12□□□□□ -1.43
VPS13D-214ENST00000620676 AK7Q96M32 723 aa6.12□□□□□ -1.43
VPS13D-214ENST00000620676 VPS37CA5D8V6 355 aaPredicted RBP6.12□□□□□ -1.43
VPS13D-214ENST00000620676 CCDC112Q8NEF3 446 aa6.12□□□□□ -1.43
VPS13D-214ENST00000620676 TNPO1Q92973 898 aaKnown RBP6.12□□□□□ -1.43
VPS13D-214ENST00000620676 IPO8O15397 1037 aaKnown RBP6.12□□□□□ -1.43
VPS13D-214ENST00000620676 ZBTB22O15209 634 aa6.11□□□□□ -1.43
VPS13D-214ENST00000620676 PDE3BQ13370 1112 aa6.11□□□□□ -1.43
VPS13D-214ENST00000620676 PKD2Q13563 968 aa6.11□□□□□ -1.43
VPS13D-214ENST00000620676 MYBBP1AQ9BQG0 1328 aaKnown RBP6.11□□□□□ -1.43
VPS13D-214ENST00000620676 AXDND1Q5T1B0 1012 aaPredicted RBP6.11□□□□□ -1.43
VPS13D-214ENST00000620676 C14orf37Q86TY3 774 aa6.11□□□□□ -1.43
VPS13D-214ENST00000620676 FBXO3Q9UK99 471 aa6.11□□□□□ -1.43
VPS13D-214ENST00000620676 TPM4P67936 248 aa6.11□□□□□ -1.43
VPS13D-214ENST00000620676 WASHC2CQ9Y4E1 1318 aa6.11□□□□□ -1.43
VPS13D-214ENST00000620676 LEKR1Q6ZMV7 388 aa6.11□□□□□ -1.43
VPS13D-214ENST00000620676 C16orf45Q96MC5 204 aaPredicted RBP6.11□□□□□ -1.43
VPS13D-214ENST00000620676 KIF7Q2M1P5 1343 aa6.11□□□□□ -1.43
VPS13D-214ENST00000620676 ZNF428Q96B54 188 aa6.11□□□□□ -1.43
VPS13D-214ENST00000620676 NOL10Q9BSC4 688 aaKnown RBP6.11□□□□□ -1.43
VPS13D-214ENST00000620676 ST20-MTHFSA0A0A6YYL1 179 aa6.1□□□□□ -1.43
VPS13D-214ENST00000620676 PPARDQ03181 441 aa6.1□□□□□ -1.43
VPS13D-214ENST00000620676 H3BQV1 296 aa6.1□□□□□ -1.43
VPS13D-214ENST00000620676 OFD1O75665 1012 aa6.1□□□□□ -1.43
VPS13D-214ENST00000620676 IFFO2Q5TF58 517 aa6.1□□□□□ -1.43
VPS13D-214ENST00000620676 HMMRO75330 724 aa6.1□□□□□ -1.43
VPS13D-214ENST00000620676 HMGN5P82970 282 aaKnown RBP6.1□□□□□ -1.43
VPS13D-214ENST00000620676 FIBPO43427 364 aa6.1□□□□□ -1.43
VPS13D-214ENST00000620676 GOLGA3Q08378 1498 aa6.1□□□□□ -1.43
VPS13D-214ENST00000620676 SMAP1Q8IYB5 467 aaPredicted RBP6.1□□□□□ -1.43
VPS13D-214ENST00000620676 STK11IPQ8N1F8 1099 aa6.1□□□□□ -1.43
VPS13D-214ENST00000620676 U2AF2P26368 475 aaKnown RBP eCLIP6.1□□□□□ -1.435e-7■■■■□ 26.4
VPS13D-214ENST00000620676 BICD2Q8TD16 824 aa6.1□□□□□ -1.43
VPS13D-214ENST00000620676 DNAJC2Q99543 621 aaKnown RBP6.1□□□□□ -1.43
VPS13D-214ENST00000620676 A0A0G2JS52 829 aa6.1□□□□□ -1.43
VPS13D-214ENST00000620676 GDPD2Q9HCC8 539 aa6.1□□□□□ -1.43
VPS13D-214ENST00000620676 SEC24BO95487 1268 aa6.1□□□□□ -1.43
VPS13D-214ENST00000620676 JARID2Q92833 1246 aaPredicted RBP6.1□□□□□ -1.43
VPS13D-214ENST00000620676 HSP90B2PQ58FF3 399 aa6.09□□□□□ -1.43
VPS13D-214ENST00000620676 CALCOCO1Q9P1Z2 691 aa6.09□□□□□ -1.43
VPS13D-214ENST00000620676 C10orf67Q8IYJ2 551 aa6.09□□□□□ -1.43
VPS13D-214ENST00000620676 CLSTN1O94985 981 aa6.09□□□□□ -1.43
VPS13D-214ENST00000620676 TMF1P82094 1093 aa6.09□□□□□ -1.43
VPS13D-214ENST00000620676 ARGLU1Q9NWB6 273 aaPredicted RBP6.09□□□□□ -1.43
VPS13D-214ENST00000620676 LMOD3Q0VAK6 560 aa6.09□□□□□ -1.43
VPS13D-214ENST00000620676 DHX8Q14562 1220 aaKnown RBP6.09□□□□□ -1.43
VPS13D-214ENST00000620676 LARP6Q9BRS8 491 aaKnown RBP6.09□□□□□ -1.43
VPS13D-214ENST00000620676 STAG3Q9UJ98 1225 aa6.09□□□□□ -1.43
VPS13D-214ENST00000620676 ADAMTS8Q9UP79 889 aa6.09□□□□□ -1.43
VPS13D-214ENST00000620676 GIMAP7Q8NHV1 300 aa6.09□□□□□ -1.43
VPS13D-214ENST00000620676 GTPBP4Q9BZE4 634 aaKnown RBP6.09□□□□□ -1.43
VPS13D-214ENST00000620676 IGHDP01880 384 aa6.08□□□□□ -1.44
VPS13D-214ENST00000620676 NLRP13Q86W25 1043 aa6.08□□□□□ -1.44
VPS13D-214ENST00000620676 ROCK2O75116 1388 aaKnown RBP6.08□□□□□ -1.44
VPS13D-214ENST00000620676 TTC12Q9H892 705 aaPredicted RBP6.08□□□□□ -1.44
VPS13D-214ENST00000620676 SF3A1Q15459 793 aaKnown RBP6.08□□□□□ -1.44
VPS13D-214ENST00000620676 ANO2Q9NQ90 1003 aa6.08□□□□□ -1.44
VPS13D-214ENST00000620676 LETM1O95202 739 aaPredicted RBP6.08□□□□□ -1.44
VPS13D-214ENST00000620676 LMAN1P49257 510 aa6.08□□□□□ -1.44
VPS13D-214ENST00000620676 CCDC34Q96HJ3 373 aa6.08□□□□□ -1.44
VPS13D-214ENST00000620676 ZSCAN23Q3MJ62 389 aa6.08□□□□□ -1.44
VPS13D-214ENST00000620676 FILIP1Q7Z7B0 1213 aa6.08□□□□□ -1.44
VPS13D-214ENST00000620676 CCDC191Q8NCU4 936 aa6.08□□□□□ -1.44
VPS13D-214ENST00000620676 GTF3C6Q969F1 213 aa6.08□□□□□ -1.44
VPS13D-214ENST00000620676 SCRIBQ14160 1630 aa6.08□□□□□ -1.44
VPS13D-214ENST00000620676 RNF187Q5TA31 235 aaPredicted RBP6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms