RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 RRP7AQ9Y3A4 280 aaKnown RBP19.08■□□□□ 0.65
SHROOM1-208ENST00000617339 RCAN3Q9UKA8 241 aa19.07■□□□□ 0.64
SHROOM1-208ENST00000617339 SHROOM2Q13796 1616 aa19.07■□□□□ 0.64
SHROOM1-208ENST00000617339 CLASP1Q7Z460 1538 aa19.06■□□□□ 0.64
SHROOM1-208ENST00000617339 NEFMP07197 916 aa19.06■□□□□ 0.64
SHROOM1-208ENST00000617339 PPP2R1AP30153 589 aa19.06■□□□□ 0.64
SHROOM1-208ENST00000617339 CABP2Q9NPB3 220 aa19.06■□□□□ 0.64
SHROOM1-208ENST00000617339 SRPK2P78362 688 aaKnown RBP19.04■□□□□ 0.64
SHROOM1-208ENST00000617339 KDM5DQ9BY66 1539 aa19.04■□□□□ 0.64
SHROOM1-208ENST00000617339 APAF1O14727 1248 aa19.04■□□□□ 0.64
SHROOM1-208ENST00000617339 PPM1GO15355 546 aaPredicted RBP19.04■□□□□ 0.64
SHROOM1-208ENST00000617339 POGKQ9P215 609 aa19.04■□□□□ 0.64
SHROOM1-208ENST00000617339 ABCC1P33527 1531 aa19.03■□□□□ 0.64
SHROOM1-208ENST00000617339 IDI1Q13907 227 aa19.03■□□□□ 0.64
SHROOM1-208ENST00000617339 CDCA8Q53HL2 280 aa19.03■□□□□ 0.64
SHROOM1-208ENST00000617339 MINK1Q8N4C8 1332 aaPredicted RBP19.02■□□□□ 0.64
SHROOM1-208ENST00000617339 BRD4O60885 1362 aaPredicted RBP19.01■□□□□ 0.63
SHROOM1-208ENST00000617339 NUTM2FA1L443 756 aa19.01■□□□□ 0.63
SHROOM1-208ENST00000617339 ATP10AO60312 1499 aa19.01■□□□□ 0.63
SHROOM1-208ENST00000617339 NOS1P29475 1434 aa19■□□□□ 0.63
SHROOM1-208ENST00000617339 MORC1Q86VD1 984 aa19■□□□□ 0.63
SHROOM1-208ENST00000617339 CARD14Q9BXL6 1004 aa19■□□□□ 0.63
SHROOM1-208ENST00000617339 UHRF1BP1LA0JNW5 1464 aa18.99■□□□□ 0.63
SHROOM1-208ENST00000617339 ATP7AQ04656 1500 aa18.98■□□□□ 0.63
SHROOM1-208ENST00000617339 CENPJQ9HC77 1338 aaPredicted RBP18.98■□□□□ 0.63
SHROOM1-208ENST00000617339 AMER1Q5JTC6 1135 aaPredicted RBP18.97■□□□□ 0.63
SHROOM1-208ENST00000617339 FBLN1P23142 703 aa18.97■□□□□ 0.63
SHROOM1-208ENST00000617339 SOX12O15370 315 aa18.96■□□□□ 0.63
SHROOM1-208ENST00000617339 C20orf194Q5TEA3 1177 aa18.96■□□□□ 0.63
SHROOM1-208ENST00000617339 MAST1Q9Y2H9 1570 aa18.96■□□□□ 0.63
SHROOM1-208ENST00000617339 RRP1P56182 461 aaKnown RBP18.95■□□□□ 0.62
SHROOM1-208ENST00000617339 SLC24A1O60721 1099 aa18.94■□□□□ 0.62
SHROOM1-208ENST00000617339 ZFYVE16Q7Z3T8 1539 aa18.93■□□□□ 0.62
SHROOM1-208ENST00000617339 U2SURPO15042 1029 aaKnown RBP18.93■□□□□ 0.62
SHROOM1-208ENST00000617339 BRPF3Q9ULD4 1205 aa18.93■□□□□ 0.62
SHROOM1-208ENST00000617339 PARD3Q8TEW0 1356 aa18.93■□□□□ 0.62
SHROOM1-208ENST00000617339 GGNBP2Q9H3C7 697 aa18.93■□□□□ 0.62
SHROOM1-208ENST00000617339 MAGI2Q86UL8 1455 aa18.92■□□□□ 0.62
SHROOM1-208ENST00000617339 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.92■□□□□ 0.62
SHROOM1-208ENST00000617339 RTEL1-TNFRSF6BF6WH68 1400 aa18.92■□□□□ 0.62
SHROOM1-208ENST00000617339 CRBNQ96SW2 442 aa18.92■□□□□ 0.62
SHROOM1-208ENST00000617339 GPRASP1Q5JY77 1395 aa18.91■□□□□ 0.62
SHROOM1-208ENST00000617339 BCL2L13Q9BXK5 485 aa18.91■□□□□ 0.62
SHROOM1-208ENST00000617339 SMG6Q86US8 1419 aaKnown RBP18.91■□□□□ 0.62
SHROOM1-208ENST00000617339 FRAT1Q92837 279 aaPredicted RBP18.91■□□□□ 0.62
SHROOM1-208ENST00000617339 CANXP27824 592 aaKnown RBP18.9■□□□□ 0.62
SHROOM1-208ENST00000617339 EIF3AQ14152 1382 aaKnown RBP18.9■□□□□ 0.62
SHROOM1-208ENST00000617339 COL17A1Q9UMD9 1497 aaPredicted RBP18.9■□□□□ 0.62
SHROOM1-208ENST00000617339 VGFO15240 615 aaPredicted RBP18.89■□□□□ 0.62
SHROOM1-208ENST00000617339 YEATS2Q9ULM3 1422 aa18.89■□□□□ 0.61
SHROOM1-208ENST00000617339 SPINK5Q9NQ38 1064 aaPredicted RBP18.89■□□□□ 0.61
SHROOM1-208ENST00000617339 WAPLQ7Z5K2 1190 aa18.88■□□□□ 0.61
SHROOM1-208ENST00000617339 PRAM1Q96QH2 718 aa18.88■□□□□ 0.61
SHROOM1-208ENST00000617339 MTHFSP49914 203 aa18.88■□□□□ 0.61
SHROOM1-208ENST00000617339 C14orf37Q86TY3 774 aa18.88■□□□□ 0.61
SHROOM1-208ENST00000617339 SCAF11Q99590 1463 aaKnown RBP18.88■□□□□ 0.61
SHROOM1-208ENST00000617339 IQGAP3Q86VI3 1631 aa18.88■□□□□ 0.61
SHROOM1-208ENST00000617339 UNC13BO14795 1591 aa18.87■□□□□ 0.61
SHROOM1-208ENST00000617339 ZNF518AQ6AHZ1 1483 aa18.87■□□□□ 0.61
SHROOM1-208ENST00000617339 DMRT2Q9Y5R5 561 aa18.87■□□□□ 0.61
SHROOM1-208ENST00000617339 TRPM1Q7Z4N2 1603 aa18.87■□□□□ 0.61
SHROOM1-208ENST00000617339 ZBTB7CA1YPR0 619 aa18.87■□□□□ 0.61
SHROOM1-208ENST00000617339 U2AF1L5P0DN76 240 aaPredicted RBP18.87■□□□□ 0.61
SHROOM1-208ENST00000617339 U2AF1Q01081 240 aaKnown RBP eCLIP18.87■□□□□ 0.61
SHROOM1-208ENST00000617339 E9PCH4 1651 aa18.87■□□□□ 0.61
SHROOM1-208ENST00000617339 NPATQ14207 1427 aa18.87■□□□□ 0.61
SHROOM1-208ENST00000617339 PRDM15P57071 1507 aaPredicted RBP18.86■□□□□ 0.61
SHROOM1-208ENST00000617339 GOLGA2Q08379 1002 aa18.86■□□□□ 0.61
SHROOM1-208ENST00000617339 PLXNC1O60486 1568 aa18.86■□□□□ 0.61
SHROOM1-208ENST00000617339 BCAR3O75815 825 aa18.85■□□□□ 0.61
SHROOM1-208ENST00000617339 SLC4A3P48751 1232 aa18.85■□□□□ 0.61
SHROOM1-208ENST00000617339 CLTCL1P53675 1640 aa18.85■□□□□ 0.61
SHROOM1-208ENST00000617339 C14orf93Q9H972 538 aaKnown RBP18.85■□□□□ 0.61
SHROOM1-208ENST00000617339 LRPPRCP42704 1394 aaKnown RBP18.84■□□□□ 0.61
SHROOM1-208ENST00000617339 PDE4AP27815 886 aa18.83■□□□□ 0.61
SHROOM1-208ENST00000617339 RGS3P49796 1198 aa18.83■□□□□ 0.6
SHROOM1-208ENST00000617339 CLUAP1Q96AJ1 413 aa18.83■□□□□ 0.6
SHROOM1-208ENST00000617339 PLEKHH1Q9ULM0 1364 aa18.82■□□□□ 0.6
SHROOM1-208ENST00000617339 CEBPAP49715 358 aaPredicted RBP18.81■□□□□ 0.6
SHROOM1-208ENST00000617339 PTPRTO14522 1441 aa18.8■□□□□ 0.6
SHROOM1-208ENST00000617339 NSD3Q9BZ95 1437 aa18.8■□□□□ 0.6
SHROOM1-208ENST00000617339 NCKAP5LQ9HCH0 1330 aa18.79■□□□□ 0.6
SHROOM1-208ENST00000617339 POGZQ7Z3K3 1410 aa18.79■□□□□ 0.6
SHROOM1-208ENST00000617339 TXNDC2Q86VQ3 553 aa18.79■□□□□ 0.6
SHROOM1-208ENST00000617339 CABP1Q9NZU7 370 aa18.79■□□□□ 0.6
SHROOM1-208ENST00000617339 EVC2Q86UK5 1308 aa18.78■□□□□ 0.6
SHROOM1-208ENST00000617339 PDE3BQ13370 1112 aa18.77■□□□□ 0.6
SHROOM1-208ENST00000617339 TRPM2O94759 1503 aa18.76■□□□□ 0.59
SHROOM1-208ENST00000617339 TCP11L2Q8N4U5 519 aa18.76■□□□□ 0.59
SHROOM1-208ENST00000617339 LMOD2Q6P5Q4 547 aa18.75■□□□□ 0.59
SHROOM1-208ENST00000617339 STAC3Q96MF2 364 aa18.75■□□□□ 0.59
SHROOM1-208ENST00000617339 DUSP27Q5VZP5 1158 aa18.75■□□□□ 0.59
SHROOM1-208ENST00000617339 DAXXQ9UER7 740 aaPredicted RBP18.75■□□□□ 0.59
SHROOM1-208ENST00000617339 ABCA9Q8IUA7 1624 aa18.74■□□□□ 0.59
SHROOM1-208ENST00000617339 PANK1Q8TE04 598 aa18.73■□□□□ 0.59
SHROOM1-208ENST00000617339 CGNL1Q0VF96 1302 aa18.73■□□□□ 0.59
SHROOM1-208ENST00000617339 CDK19Q9BWU1 502 aa18.73■□□□□ 0.59
SHROOM1-208ENST00000617339 CFAP53Q96M91 514 aa18.73■□□□□ 0.59
SHROOM1-208ENST00000617339 TCERG1O14776 1098 aaKnown RBP18.72■□□□□ 0.59
SHROOM1-208ENST00000617339 COG6Q9Y2V7 657 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms