RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 CCDC144AA2RUR9 1427 aa13.16□□□□□ -0.3
VPS39-214ENST00000614932 CLASP1Q7Z460 1538 aa13.15□□□□□ -0.3
VPS39-214ENST00000614932 GOLGA6L3A6NEY3 463 aa13.15□□□□□ -0.3
VPS39-214ENST00000614932 ROCK2O75116 1388 aaKnown RBP13.15□□□□□ -0.3
VPS39-214ENST00000614932 SPAG9O60271 1321 aaKnown RBP13.15□□□□□ -0.3
VPS39-214ENST00000614932 PLCH2O75038 1416 aa13.14□□□□□ -0.31
VPS39-214ENST00000614932 MYO5CQ9NQX4 1742 aa13.14□□□□□ -0.31
VPS39-214ENST00000614932 BRD2P25440 801 aaKnown RBP13.13□□□□□ -0.31
VPS39-214ENST00000614932 PLPPR3Q6T4P5 718 aa13.13□□□□□ -0.31
VPS39-214ENST00000614932 FTSJ3Q8IY81 847 aaKnown RBP13.13□□□□□ -0.31
VPS39-214ENST00000614932 BCORL1Q5H9F3 1711 aa13.13□□□□□ -0.31
VPS39-214ENST00000614932 TMEM51Q9NW97 253 aa13.13□□□□□ -0.31
VPS39-214ENST00000614932 KIAA1211Q6ZU35 1233 aa13.12□□□□□ -0.31
VPS39-214ENST00000614932 FSD2A1L4K1 749 aa13.12□□□□□ -0.31
VPS39-214ENST00000614932 DMTNQ08495 405 aa13.12□□□□□ -0.31
VPS39-214ENST00000614932 PLA2R1Q13018 1463 aa13.11□□□□□ -0.31
VPS39-214ENST00000614932 PANK2Q9BZ23 570 aa13.11□□□□□ -0.31
VPS39-214ENST00000614932 KIF3BO15066 747 aa13.1□□□□□ -0.31
VPS39-214ENST00000614932 PPP4R3BQ5MIZ7 849 aa13.1□□□□□ -0.31
VPS39-214ENST00000614932 ZNF830Q96NB3 372 aaPredicted RBP13.1□□□□□ -0.31
VPS39-214ENST00000614932 ERBB4Q15303 1308 aa13.09□□□□□ -0.31
VPS39-214ENST00000614932 KDM5DQ9BY66 1539 aa13.09□□□□□ -0.31
VPS39-214ENST00000614932 TERF1P54274 439 aa13.08□□□□□ -0.31
VPS39-214ENST00000614932 ZFP91Q96JP5 570 aaPredicted RBP13.08□□□□□ -0.31
VPS39-214ENST00000614932 SCAPERQ9BY12 1400 aa13.08□□□□□ -0.32
VPS39-214ENST00000614932 RIPK4P57078 832 aa13.08□□□□□ -0.32
VPS39-214ENST00000614932 MTERF4Q7Z6M4 381 aaKnown RBP13.08□□□□□ -0.32
VPS39-214ENST00000614932 KDM5CP41229 1560 aa13.08□□□□□ -0.32
VPS39-214ENST00000614932 TNNT2P45379 298 aaPredicted RBP13.08□□□□□ -0.32
VPS39-214ENST00000614932 PLCD3Q8N3E9 789 aa13.08□□□□□ -0.32
VPS39-214ENST00000614932 DHX29Q7Z478 1369 aaKnown RBP13.07□□□□□ -0.32
VPS39-214ENST00000614932 RALGAPBQ86X10 1494 aa13.07□□□□□ -0.32
VPS39-214ENST00000614932 OSCARQ8IYS5 282 aa13.07□□□□□ -0.32
VPS39-214ENST00000614932 SENP3Q9H4L4 574 aaPredicted RBP13.07□□□□□ -0.32
VPS39-214ENST00000614932 EXOC6Q8TAG9 804 aa13.07□□□□□ -0.32
VPS39-214ENST00000614932 UHRF1BP1Q6BDS2 1440 aa13.06□□□□□ -0.32
VPS39-214ENST00000614932 NPM1P06748 294 aaKnown RBP eCLIP13.06□□□□□ -0.32
VPS39-214ENST00000614932 MYH16Q9H6N6 1097 aa13.06□□□□□ -0.32
VPS39-214ENST00000614932 FAM13BQ9NYF5 915 aa13.06□□□□□ -0.32
VPS39-214ENST00000614932 MRE11P49959 708 aa13.06□□□□□ -0.32
VPS39-214ENST00000614932 TEX2Q8IWB9 1127 aa13.06□□□□□ -0.32
VPS39-214ENST00000614932 PRDM10Q9NQV6 1147 aa13.06□□□□□ -0.32
VPS39-214ENST00000614932 UHRF1BP1LA0JNW5 1464 aa13.05□□□□□ -0.32
VPS39-214ENST00000614932 DHX37Q8IY37 1157 aaKnown RBP13.05□□□□□ -0.32
VPS39-214ENST00000614932 FANCAO15360 1455 aa13.05□□□□□ -0.32
VPS39-214ENST00000614932 A2MP01023 1474 aa13.05□□□□□ -0.32
VPS39-214ENST00000614932 WDR7Q9Y4E6 1490 aa13.05□□□□□ -0.32
VPS39-214ENST00000614932 ABCC1P33527 1531 aa13.05□□□□□ -0.32
VPS39-214ENST00000614932 ANP32BQ92688 251 aaKnown RBP13.05□□□□□ -0.32
VPS39-214ENST00000614932 DUOX2Q9NRD8 1548 aa13.04□□□□□ -0.32
VPS39-214ENST00000614932 PRAG1Q86YV5 1406 aa13.04□□□□□ -0.32
VPS39-214ENST00000614932 ASXL2Q76L83 1435 aa13.04□□□□□ -0.32
VPS39-214ENST00000614932 TMC1Q8TDI8 760 aa13.04□□□□□ -0.32
VPS39-214ENST00000614932 TRIM44Q96DX7 344 aaPredicted RBP13.04□□□□□ -0.32
VPS39-214ENST00000614932 KIF20AO95235 890 aa13.03□□□□□ -0.32
VPS39-214ENST00000614932 CC2D1BQ5T0F9 858 aaKnown RBP13.03□□□□□ -0.32
VPS39-214ENST00000614932 VGLL3A8MV65 326 aa13.03□□□□□ -0.32
VPS39-214ENST00000614932 CHGAP10645 457 aaKnown RBP13.03□□□□□ -0.32
VPS39-214ENST00000614932 MAST1Q9Y2H9 1570 aa13.02□□□□□ -0.32
VPS39-214ENST00000614932 CHRM1P11229 460 aaPredicted RBP13.02□□□□□ -0.33
VPS39-214ENST00000614932 ZSCAN20P17040 1043 aaPredicted RBP13.02□□□□□ -0.33
VPS39-214ENST00000614932 RRP1P56182 461 aaKnown RBP13.02□□□□□ -0.33
VPS39-214ENST00000614932 CHMP4AQ9BY43 222 aa13.02□□□□□ -0.33
VPS39-214ENST00000614932 UNC13BO14795 1591 aa13.01□□□□□ -0.33
VPS39-214ENST00000614932 OFD1O75665 1012 aa13.01□□□□□ -0.33
VPS39-214ENST00000614932 GGT6Q6P531 493 aa13.01□□□□□ -0.33
VPS39-214ENST00000614932 ERBINQ96RT1 1412 aa13.01□□□□□ -0.33
VPS39-214ENST00000614932 ADGRL1O94910 1474 aa13.01□□□□□ -0.33
VPS39-214ENST00000614932 PLXNC1O60486 1568 aa13.01□□□□□ -0.33
VPS39-214ENST00000614932 DISP3Q9P2K9 1392 aa13□□□□□ -0.33
VPS39-214ENST00000614932 PDZRN4Q6ZMN7 1036 aaPredicted RBP13□□□□□ -0.33
VPS39-214ENST00000614932 SECISBP2LQ93073 1101 aaKnown RBP12.99□□□□□ -0.33
VPS39-214ENST00000614932 GTPBP4Q9BZE4 634 aaKnown RBP12.99□□□□□ -0.33
VPS39-214ENST00000614932 FAM161AQ3B820 660 aa12.98□□□□□ -0.33
VPS39-214ENST00000614932 IQGAP3Q86VI3 1631 aa12.98□□□□□ -0.33
VPS39-214ENST00000614932 RAPGEF3O95398 923 aa12.98□□□□□ -0.33
VPS39-214ENST00000614932 LETM1O95202 739 aaPredicted RBP12.98□□□□□ -0.33
VPS39-214ENST00000614932 PANK3Q9H999 370 aa12.98□□□□□ -0.33
VPS39-214ENST00000614932 ZFYVE16Q7Z3T8 1539 aa12.97□□□□□ -0.33
VPS39-214ENST00000614932 TESK2Q96S53 571 aa12.97□□□□□ -0.33
VPS39-214ENST00000614932 GRPEL1Q9HAV7 217 aa12.97□□□□□ -0.33
VPS39-214ENST00000614932 VGFO15240 615 aaPredicted RBP12.97□□□□□ -0.33
VPS39-214ENST00000614932 TAF3Q5VWG9 929 aa12.97□□□□□ -0.33
VPS39-214ENST00000614932 ISY1Q9ULR0 285 aaKnown RBP12.97□□□□□ -0.33
VPS39-214ENST00000614932 POLR1AO95602 1720 aaPredicted RBP12.96□□□□□ -0.33
VPS39-214ENST00000614932 NUTM2DQ5VT03 806 aaPredicted RBP12.96□□□□□ -0.33
VPS39-214ENST00000614932 CYB5RLQ6IPT4 315 aa12.95□□□□□ -0.34
VPS39-214ENST00000614932 PNISRQ8TF01 805 aaKnown RBP12.95□□□□□ -0.34
VPS39-214ENST00000614932 CCDC94Q9BW85 323 aaPredicted RBP12.95□□□□□ -0.34
VPS39-214ENST00000614932 UGGT1Q9NYU2 1555 aa12.95□□□□□ -0.34
VPS39-214ENST00000614932 TRPM1Q7Z4N2 1603 aa12.95□□□□□ -0.34
VPS39-214ENST00000614932 C8orf34Q49A92 452 aa12.95□□□□□ -0.34
VPS39-214ENST00000614932 ATP7AQ04656 1500 aa12.95□□□□□ -0.34
VPS39-214ENST00000614932 KANK1Q14678 1352 aa12.94□□□□□ -0.34
VPS39-214ENST00000614932 CDK11BP21127 795 aaKnown RBP12.94□□□□□ -0.34
VPS39-214ENST00000614932 SKAP1Q86WV1 359 aa12.94□□□□□ -0.34
VPS39-214ENST00000614932 ARID3AQ99856 593 aa12.94□□□□□ -0.34
VPS39-214ENST00000614932 GZF1Q9H116 711 aaPredicted RBP12.94□□□□□ -0.34
VPS39-214ENST00000614932 ATP10AO60312 1499 aa12.94□□□□□ -0.34
VPS39-214ENST00000614932 CFAP70Q5T0N1 1121 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms