RNA–Protein interactions for RNA: ENST00000600804.1

CHMP2A-207, Transcript of charged multivesicular body protein 2A, humanhuman

TSL 2

Gene CHMP2A, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2A-207ENST00000600804 PHF23Q9BUL5 403 aaPredicted RBP17.34■□□□□ 0.37
CHMP2A-207ENST00000600804 TMEM2Q9UHN6 1383 aa17.34■□□□□ 0.37
CHMP2A-207ENST00000600804 CHD2O14647 1828 aaKnown RBP17.33■□□□□ 0.37
CHMP2A-207ENST00000600804 ADGRB3O60242 1522 aa17.33■□□□□ 0.37
CHMP2A-207ENST00000600804 IQGAP3Q86VI3 1631 aa17.31■□□□□ 0.36
CHMP2A-207ENST00000600804 SETD1AO15047 1707 aaKnown RBP17.3■□□□□ 0.36
CHMP2A-207ENST00000600804 NOS1P29475 1434 aa17.3■□□□□ 0.36
CHMP2A-207ENST00000600804 KANK1Q14678 1352 aa17.29■□□□□ 0.36
CHMP2A-207ENST00000600804 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.29■□□□□ 0.364e-8■■■■□ 22.4
CHMP2A-207ENST00000600804 FAM135BQ49AJ0 1406 aa17.29■□□□□ 0.36
CHMP2A-207ENST00000600804 TMEM94Q12767 1356 aa17.28■□□□□ 0.36
CHMP2A-207ENST00000600804 NUP155O75694 1391 aa17.28■□□□□ 0.36
CHMP2A-207ENST00000600804 IDI1Q13907 227 aa17.27■□□□□ 0.36
CHMP2A-207ENST00000600804 PHLPP1O60346 1717 aa17.27■□□□□ 0.35
CHMP2A-207ENST00000600804 RBM33Q96EV2 1170 aaKnown RBP17.26■□□□□ 0.35
CHMP2A-207ENST00000600804 TMEM131LA2VDJ0 1609 aa17.25■□□□□ 0.35
CHMP2A-207ENST00000600804 NKTRP30414 1462 aaKnown RBP17.24■□□□□ 0.35
CHMP2A-207ENST00000600804 EID1Q9Y6B2 187 aa17.24■□□□□ 0.35
CHMP2A-207ENST00000600804 SLC26A8Q96RN1 970 aa17.23■□□□□ 0.35
CHMP2A-207ENST00000600804 E9PCH4 1651 aa17.23■□□□□ 0.35
CHMP2A-207ENST00000600804 ZFYVE9O95405 1425 aa17.22■□□□□ 0.35
CHMP2A-207ENST00000600804 COL16A1Q07092 1604 aaPredicted RBP17.22■□□□□ 0.35
CHMP2A-207ENST00000600804 KCNA6P17658 529 aa17.22■□□□□ 0.35
CHMP2A-207ENST00000600804 RPRD2Q5VT52 1461 aaKnown RBP17.21■□□□□ 0.35
CHMP2A-207ENST00000600804 POTEAQ6S8J7 498 aa17.21■□□□□ 0.35
CHMP2A-207ENST00000600804 TRIM52Q96A61 297 aa17.21■□□□□ 0.35
CHMP2A-207ENST00000600804 MPHOSPH9Q99550 1183 aa17.19■□□□□ 0.34
CHMP2A-207ENST00000600804 STAG3Q9UJ98 1225 aa17.18■□□□□ 0.34
CHMP2A-207ENST00000600804 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.18■□□□□ 0.34
CHMP2A-207ENST00000600804 PROSER2Q86WR7 435 aaPredicted RBP17.17■□□□□ 0.34
CHMP2A-207ENST00000600804 SLC4A1APQ9BWU0 796 aaKnown RBP17.17■□□□□ 0.34
CHMP2A-207ENST00000600804 DHX57Q6P158 1386 aaKnown RBP17.15■□□□□ 0.34
CHMP2A-207ENST00000600804 LRP6O75581 1613 aa17.14■□□□□ 0.33
CHMP2A-207ENST00000600804 PLEKHG1Q9ULL1 1385 aa17.14■□□□□ 0.33
CHMP2A-207ENST00000600804 SHPRHQ149N8 1683 aa17.13■□□□□ 0.33
CHMP2A-207ENST00000600804 RIMS2Q9UQ26 1411 aa17.13■□□□□ 0.33
CHMP2A-207ENST00000600804 SLC52A1Q9NWF4 448 aa17.12■□□□□ 0.33
CHMP2A-207ENST00000600804 MSH6P52701 1360 aa17.12■□□□□ 0.33
CHMP2A-207ENST00000600804 ADAMTS13Q76LX8 1427 aa17.12■□□□□ 0.33
CHMP2A-207ENST00000600804 NRXN3Q9Y4C0 1643 aa17.11■□□□□ 0.33
CHMP2A-207ENST00000600804 AHDC1Q5TGY3 1603 aaPredicted RBP17.1■□□□□ 0.33
CHMP2A-207ENST00000600804 DIP2AQ14689 1571 aa17.1■□□□□ 0.33
CHMP2A-207ENST00000600804 CLSPNQ9HAW4 1339 aa17.09■□□□□ 0.33
CHMP2A-207ENST00000600804 SPHKAPQ2M3C7 1700 aa17.09■□□□□ 0.33
CHMP2A-207ENST00000600804 XRN1Q8IZH2 1706 aaKnown RBP17.08■□□□□ 0.32
CHMP2A-207ENST00000600804 ANKRD30BQ9BXX2 1392 aa17.08■□□□□ 0.32
CHMP2A-207ENST00000600804 SLAIN2Q9P270 581 aa17.08■□□□□ 0.32
CHMP2A-207ENST00000600804 TRPM2O94759 1503 aa17.07■□□□□ 0.32
CHMP2A-207ENST00000600804 JCADQ9P266 1359 aa17.07■□□□□ 0.32
CHMP2A-207ENST00000600804 PTPRUQ92729 1446 aa17.05■□□□□ 0.32
CHMP2A-207ENST00000600804 BCANQ96GW7 911 aa17.05■□□□□ 0.32
CHMP2A-207ENST00000600804 NHSL1Q5SYE7 1610 aa17.05■□□□□ 0.32
CHMP2A-207ENST00000600804 NUTM2DQ5VT03 806 aaPredicted RBP17.04■□□□□ 0.32
CHMP2A-207ENST00000600804 TBX22Q9Y458 520 aa17.03■□□□□ 0.32
CHMP2A-207ENST00000600804 NCOA3Q9Y6Q9 1424 aa17.03■□□□□ 0.32
CHMP2A-207ENST00000600804 FOXD1Q16676 465 aa17.02■□□□□ 0.32
CHMP2A-207ENST00000600804 NALCNQ8IZF0 1738 aa17.01■□□□□ 0.31
CHMP2A-207ENST00000600804 PPP1R15AO75807 674 aaPredicted RBP17■□□□□ 0.31
CHMP2A-207ENST00000600804 SETBP1Q9Y6X0 1596 aa16.99■□□□□ 0.31
CHMP2A-207ENST00000600804 CCDC144AA2RUR9 1427 aa16.99■□□□□ 0.31
CHMP2A-207ENST00000600804 PIK3R4Q99570 1358 aa16.99■□□□□ 0.31
CHMP2A-207ENST00000600804 CLTCL1P53675 1640 aa16.98■□□□□ 0.31
CHMP2A-207ENST00000600804 ASXL1Q8IXJ9 1541 aa16.97■□□□□ 0.31
CHMP2A-207ENST00000600804 CHGAP10645 457 aaKnown RBP16.97■□□□□ 0.31
CHMP2A-207ENST00000600804 CCER1Q8TC90 406 aaPredicted RBP16.96■□□□□ 0.31
CHMP2A-207ENST00000600804 KIF1BO60333 1816 aa16.96■□□□□ 0.3
CHMP2A-207ENST00000600804 SPATA31A6Q5VVP1 1343 aa16.96■□□□□ 0.3
CHMP2A-207ENST00000600804 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.94■□□□□ 0.3
CHMP2A-207ENST00000600804 C19orf44Q9H6X5 657 aa16.94■□□□□ 0.3
CHMP2A-207ENST00000600804 MST1RQ04912 1400 aa16.94■□□□□ 0.3
CHMP2A-207ENST00000600804 NEXMIFQ5QGS0 1516 aa16.93■□□□□ 0.3
CHMP2A-207ENST00000600804 HDGFP51858 240 aaKnown RBP16.93■□□□□ 0.3
CHMP2A-207ENST00000600804 BRINP3Q76B58 766 aa16.93■□□□□ 0.3
CHMP2A-207ENST00000600804 AMOTL2Q9Y2J4 779 aa16.93■□□□□ 0.3
CHMP2A-207ENST00000600804 SPATA31E1Q6ZUB1 1445 aa16.93■□□□□ 0.3
CHMP2A-207ENST00000600804 C14orf37Q86TY3 774 aa16.92■□□□□ 0.3
CHMP2A-207ENST00000600804 CADPS2Q86UW7 1296 aa16.92■□□□□ 0.3
CHMP2A-207ENST00000600804 DCCP43146 1447 aa16.92■□□□□ 0.3
CHMP2A-207ENST00000600804 UPF1Q92900 1129 aaKnown RBP eCLIP16.91■□□□□ 0.3
CHMP2A-207ENST00000600804 LAMC1P11047 1609 aa16.91■□□□□ 0.3
CHMP2A-207ENST00000600804 METP08581 1390 aa16.89■□□□□ 0.3
CHMP2A-207ENST00000600804 ATF3P18847 181 aa16.89■□□□□ 0.29
CHMP2A-207ENST00000600804 SIN3AQ96ST3 1273 aa16.88■□□□□ 0.29
CHMP2A-207ENST00000600804 TIMELESSQ9UNS1 1208 aa16.88■□□□□ 0.29
CHMP2A-207ENST00000600804 CDK12Q9NYV4 1490 aaPredicted RBP16.87■□□□□ 0.29
CHMP2A-207ENST00000600804 MEX3CQ5U5Q3 659 aaKnown RBP16.87■□□□□ 0.29
CHMP2A-207ENST00000600804 ZNF772Q68DY9 489 aaPredicted RBP16.87■□□□□ 0.29
CHMP2A-207ENST00000600804 STAC3Q96MF2 364 aa16.87■□□□□ 0.29
CHMP2A-207ENST00000600804 RPGRIP1LQ68CZ1 1315 aa16.87■□□□□ 0.29
CHMP2A-207ENST00000600804 SRCAPQ6ZRS2 3230 aa16.86■□□□□ 0.29
CHMP2A-207ENST00000600804 ADGRL3Q9HAR2 1447 aa16.86■□□□□ 0.29
CHMP2A-207ENST00000600804 DDX17Q92841 729 aaKnown RBP16.85■□□□□ 0.29
CHMP2A-207ENST00000600804 PPLO60437 1756 aa16.84■□□□□ 0.29
CHMP2A-207ENST00000600804 NUTM2BA6NNL0 878 aaPredicted RBP16.84■□□□□ 0.29
CHMP2A-207ENST00000600804 NUTM2EB1AL46 878 aaPredicted RBP16.84■□□□□ 0.29
CHMP2A-207ENST00000600804 NUTM2AQ8IVF1 878 aaPredicted RBP16.84■□□□□ 0.29
CHMP2A-207ENST00000600804 RGS12O14924 1447 aa16.84■□□□□ 0.29
CHMP2A-207ENST00000600804 EP400Q96L91 3159 aa16.83■□□□□ 0.29
CHMP2A-207ENST00000600804 AFF2P51816 1311 aa16.83■□□□□ 0.28
CHMP2A-207ENST00000600804 PNPLA6Q8IY17 1366 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms