RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 SLC4A1APQ9BWU0 796 aaKnown RBP24.25■■□□□ 1.47
TRIM28-206ENST00000595974 HDGFP51858 240 aaKnown RBP24.24■■□□□ 1.47
TRIM28-206ENST00000595974 ACIN1Q9UKV3 1341 aaKnown RBP24.24■■□□□ 1.47
TRIM28-206ENST00000595974 SETD5Q9C0A6 1442 aa24.24■■□□□ 1.47
TRIM28-206ENST00000595974 PLEKHG1Q9ULL1 1385 aa24.23■■□□□ 1.47
TRIM28-206ENST00000595974 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.22■■□□□ 1.472e-8■□□□□ 9.6
TRIM28-206ENST00000595974 PPP1R15AO75807 674 aaPredicted RBP24.2■■□□□ 1.46
TRIM28-206ENST00000595974 LRRC7Q96NW7 1537 aa24.19■■□□□ 1.46
TRIM28-206ENST00000595974 DIP2AQ14689 1571 aa24.18■■□□□ 1.46
TRIM28-206ENST00000595974 NWD1Q149M9 1564 aa24.17■■□□□ 1.46
TRIM28-206ENST00000595974 SLC26A8Q96RN1 970 aa24.15■■□□□ 1.46
TRIM28-206ENST00000595974 RAB3GAP2Q9H2M9 1393 aa24.15■■□□□ 1.46
TRIM28-206ENST00000595974 CHD2O14647 1828 aaKnown RBP24.14■■□□□ 1.46
TRIM28-206ENST00000595974 XIRP1Q702N8 1843 aaKnown RBP24.14■■□□□ 1.46
TRIM28-206ENST00000595974 BCANQ96GW7 911 aa24.14■■□□□ 1.45
TRIM28-206ENST00000595974 NEXMIFQ5QGS0 1516 aa24.14■■□□□ 1.45
TRIM28-206ENST00000595974 NKTRP30414 1462 aaKnown RBP24.13■■□□□ 1.45
TRIM28-206ENST00000595974 UBAP1LF5GYI3 381 aa24.12■■□□□ 1.45
TRIM28-206ENST00000595974 MPHOSPH9Q99550 1183 aa24.12■■□□□ 1.45
TRIM28-206ENST00000595974 SETBP1Q9Y6X0 1596 aa24.11■■□□□ 1.45
TRIM28-206ENST00000595974 ADAMTS13Q76LX8 1427 aa24.1■■□□□ 1.45
TRIM28-206ENST00000595974 KCNA6P17658 529 aa24.1■■□□□ 1.45
TRIM28-206ENST00000595974 ZNF326Q5BKZ1 582 aaKnown RBP24.1■■□□□ 1.45
TRIM28-206ENST00000595974 NRXN3Q9Y4C0 1643 aa24.1■■□□□ 1.45
TRIM28-206ENST00000595974 NUTM2DQ5VT03 806 aaPredicted RBP24.09■■□□□ 1.45
TRIM28-206ENST00000595974 TBX22Q9Y458 520 aa24.08■■□□□ 1.45
TRIM28-206ENST00000595974 CCDC144AA2RUR9 1427 aa24.08■■□□□ 1.44
TRIM28-206ENST00000595974 PPLO60437 1756 aa24.07■■□□□ 1.44
TRIM28-206ENST00000595974 FOXD1Q16676 465 aa24.07■■□□□ 1.44
TRIM28-206ENST00000595974 TOM1O60784 492 aa24.06■■□□□ 1.44
TRIM28-206ENST00000595974 ALKQ9UM73 1620 aa24.06■■□□□ 1.44
TRIM28-206ENST00000595974 PIK3R4Q99570 1358 aa24.05■■□□□ 1.44
TRIM28-206ENST00000595974 SENP3Q9H4L4 574 aaPredicted RBP24.05■■□□□ 1.44
TRIM28-206ENST00000595974 HRCP23327 699 aa24.02■■□□□ 1.44
TRIM28-206ENST00000595974 TMEM94Q12767 1356 aa24.02■■□□□ 1.44
TRIM28-206ENST00000595974 RPGRIP1LQ68CZ1 1315 aa24.01■■□□□ 1.43
TRIM28-206ENST00000595974 IFT172Q9UG01 1749 aa24■■□□□ 1.43
TRIM28-206ENST00000595974 SPATA31E1Q6ZUB1 1445 aa23.99■■□□□ 1.43
TRIM28-206ENST00000595974 XRN1Q8IZH2 1706 aaKnown RBP23.98■■□□□ 1.43
TRIM28-206ENST00000595974 PROSER2Q86WR7 435 aaPredicted RBP23.98■■□□□ 1.43
TRIM28-206ENST00000595974 SETD1AO15047 1707 aaKnown RBP23.97■■□□□ 1.43
TRIM28-206ENST00000595974 VGFO15240 615 aaPredicted RBP23.96■■□□□ 1.43
TRIM28-206ENST00000595974 SCAF1Q9H7N4 1312 aaKnown RBP23.95■■□□□ 1.42
TRIM28-206ENST00000595974 PIP4K2BP78356 416 aa23.94■■□□□ 1.42
TRIM28-206ENST00000595974 PTPRUQ92729 1446 aa23.93■■□□□ 1.42
TRIM28-206ENST00000595974 NCOA3Q9Y6Q9 1424 aa23.93■■□□□ 1.42
TRIM28-206ENST00000595974 METP08581 1390 aa23.91■■□□□ 1.42
TRIM28-206ENST00000595974 MSH6P52701 1360 aa23.91■■□□□ 1.42
TRIM28-206ENST00000595974 ANKRD30BQ9BXX2 1392 aa23.91■■□□□ 1.42
TRIM28-206ENST00000595974 AMOTL2Q9Y2J4 779 aa23.89■■□□□ 1.41
TRIM28-206ENST00000595974 RBM33Q96EV2 1170 aaKnown RBP23.88■■□□□ 1.41
TRIM28-206ENST00000595974 RGL3Q3MIN7 710 aa23.86■■□□□ 1.41
TRIM28-206ENST00000595974 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.85■■□□□ 1.41
TRIM28-206ENST00000595974 PRAG1Q86YV5 1406 aa23.84■■□□□ 1.41
TRIM28-206ENST00000595974 ROBO1Q9Y6N7 1651 aa23.83■■□□□ 1.4
TRIM28-206ENST00000595974 MYOM2P54296 1465 aa23.82■■□□□ 1.4
TRIM28-206ENST00000595974 HSPA1LP34931 641 aa23.82■■□□□ 1.4
TRIM28-206ENST00000595974 PIK3C2GO75747 1445 aa23.82■■□□□ 1.4
TRIM28-206ENST00000595974 PTCH1Q13635 1447 aa23.82■■□□□ 1.4
TRIM28-206ENST00000595974 FAM135BQ49AJ0 1406 aa23.82■■□□□ 1.4
TRIM28-206ENST00000595974 ADGRF5Q8IZF2 1346 aa23.82■■□□□ 1.4
TRIM28-206ENST00000595974 C14orf37Q86TY3 774 aa23.81■■□□□ 1.4
TRIM28-206ENST00000595974 LAMC1P11047 1609 aa23.81■■□□□ 1.4
TRIM28-206ENST00000595974 DCCP43146 1447 aa23.8■■□□□ 1.4
TRIM28-206ENST00000595974 NRXN1Q9ULB1 1477 aa23.79■■□□□ 1.4
TRIM28-206ENST00000595974 NALCNQ8IZF0 1738 aa23.79■■□□□ 1.4
TRIM28-206ENST00000595974 C19orf44Q9H6X5 657 aa23.78■■□□□ 1.4
TRIM28-206ENST00000595974 KNDC1Q76NI1 1749 aa23.76■■□□□ 1.39
TRIM28-206ENST00000595974 ADGRL3Q9HAR2 1447 aa23.76■■□□□ 1.39
TRIM28-206ENST00000595974 ASXL1Q8IXJ9 1541 aa23.75■■□□□ 1.39
TRIM28-206ENST00000595974 CADPS2Q86UW7 1296 aa23.75■■□□□ 1.39
TRIM28-206ENST00000595974 SLAIN2Q9P270 581 aa23.74■■□□□ 1.39
TRIM28-206ENST00000595974 ATF3P18847 181 aa23.73■■□□□ 1.39
TRIM28-206ENST00000595974 ROBO2Q9HCK4 1378 aa23.72■■□□□ 1.39
TRIM28-206ENST00000595974 TECPR2O15040 1411 aa23.71■■□□□ 1.39
TRIM28-206ENST00000595974 PHLPP1O60346 1717 aa23.69■■□□□ 1.38
TRIM28-206ENST00000595974 LRPPRCP42704 1394 aaKnown RBP23.68■■□□□ 1.38
TRIM28-206ENST00000595974 MED1Q15648 1581 aaPredicted RBP23.66■■□□□ 1.38
TRIM28-206ENST00000595974 STAC3Q96MF2 364 aa23.66■■□□□ 1.38
TRIM28-206ENST00000595974 C14orf93Q9H972 538 aaKnown RBP23.66■■□□□ 1.38
TRIM28-206ENST00000595974 MST1RQ04912 1400 aa23.66■■□□□ 1.38
TRIM28-206ENST00000595974 ABCC11Q96J66 1382 aa23.65■■□□□ 1.38
TRIM28-206ENST00000595974 AHDC1Q5TGY3 1603 aaPredicted RBP23.65■■□□□ 1.38
TRIM28-206ENST00000595974 YTHDC2Q9H6S0 1430 aaKnown RBP23.65■■□□□ 1.38
TRIM28-206ENST00000595974 DISP3Q9P2K9 1392 aa23.64■■□□□ 1.37
TRIM28-206ENST00000595974 CDC42BPGQ6DT37 1551 aa23.63■■□□□ 1.37
TRIM28-206ENST00000595974 DHX57Q6P158 1386 aaKnown RBP23.63■■□□□ 1.37
TRIM28-206ENST00000595974 COL16A1Q07092 1604 aaPredicted RBP23.62■■□□□ 1.37
TRIM28-206ENST00000595974 TRIM26Q12899 539 aaPredicted RBP23.62■■□□□ 1.37
TRIM28-206ENST00000595974 DCAF11Q8TEB1 546 aa23.62■■□□□ 1.37
TRIM28-206ENST00000595974 CFAP70Q5T0N1 1121 aa23.61■■□□□ 1.37
TRIM28-206ENST00000595974 TMEM132EQ6IEE7 984 aa23.61■■□□□ 1.37
TRIM28-206ENST00000595974 ADGRB1O14514 1584 aa23.61■■□□□ 1.37
TRIM28-206ENST00000595974 STK26Q9P289 416 aa23.6■■□□□ 1.37
TRIM28-206ENST00000595974 NHSL1Q5SYE7 1610 aa23.59■■□□□ 1.37
TRIM28-206ENST00000595974 DLC1Q96QB1 1528 aa23.58■■□□□ 1.36
TRIM28-206ENST00000595974 BRINP3Q76B58 766 aa23.57■■□□□ 1.36
TRIM28-206ENST00000595974 KDM2AQ9Y2K7 1162 aa23.57■■□□□ 1.36
TRIM28-206ENST00000595974 C1orf167Q5SNV9 1468 aa23.56■■□□□ 1.36
TRIM28-206ENST00000595974 KIAA1210Q9ULL0 1709 aa23.56■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms