RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 NUTM2BA6NNL0 878 aaPredicted RBP21.78■■□□□ 1.08
SHKBP1-208ENST00000595726 NUTM2EB1AL46 878 aaPredicted RBP21.78■■□□□ 1.08
SHKBP1-208ENST00000595726 C14orf37Q86TY3 774 aa21.78■■□□□ 1.08
SHKBP1-208ENST00000595726 NUTM2AQ8IVF1 878 aaPredicted RBP21.78■■□□□ 1.08
SHKBP1-208ENST00000595726 ABCC5O15440 1437 aa21.78■■□□□ 1.08
SHKBP1-208ENST00000595726 KDM5AP29375 1690 aaKnown RBP21.76■■□□□ 1.07
SHKBP1-208ENST00000595726 FGD6Q6ZV73 1430 aa21.75■■□□□ 1.07
SHKBP1-208ENST00000595726 CHIC2Q9UKJ5 165 aa21.75■■□□□ 1.07
SHKBP1-208ENST00000595726 NOS1P29475 1434 aa21.74■■□□□ 1.07
SHKBP1-208ENST00000595726 PPP1R15AO75807 674 aaPredicted RBP21.73■■□□□ 1.07
SHKBP1-208ENST00000595726 SLC52A1Q9NWF4 448 aa21.73■■□□□ 1.07
SHKBP1-208ENST00000595726 ADGRB3O60242 1522 aa21.73■■□□□ 1.07
SHKBP1-208ENST00000595726 LMTK2Q8IWU2 1503 aa21.71■■□□□ 1.07
SHKBP1-208ENST00000595726 PLEKHG1Q9ULL1 1385 aa21.71■■□□□ 1.07
SHKBP1-208ENST00000595726 CHD2O14647 1828 aaKnown RBP21.71■■□□□ 1.07
SHKBP1-208ENST00000595726 ATF3P18847 181 aa21.7■■□□□ 1.06
SHKBP1-208ENST00000595726 NUTM2DQ5VT03 806 aaPredicted RBP21.7■■□□□ 1.06
SHKBP1-208ENST00000595726 TBX22Q9Y458 520 aa21.7■■□□□ 1.06
SHKBP1-208ENST00000595726 AFF2P51816 1311 aa21.7■■□□□ 1.06
SHKBP1-208ENST00000595726 ZFYVE9O95405 1425 aa21.7■■□□□ 1.06
SHKBP1-208ENST00000595726 CADPS2Q86UW7 1296 aa21.69■■□□□ 1.06
SHKBP1-208ENST00000595726 C19orf44Q9H6X5 657 aa21.69■■□□□ 1.06
SHKBP1-208ENST00000595726 BRINP3Q76B58 766 aa21.68■■□□□ 1.06
SHKBP1-208ENST00000595726 RIMS2Q9UQ26 1411 aa21.68■■□□□ 1.06
SHKBP1-208ENST00000595726 AHDC1Q5TGY3 1603 aaPredicted RBP21.66■■□□□ 1.06
SHKBP1-208ENST00000595726 DAPK1P53355 1430 aa21.66■■□□□ 1.06
SHKBP1-208ENST00000595726 VPS8Q8N3P4 1428 aa21.66■■□□□ 1.06
SHKBP1-208ENST00000595726 SHPRHQ149N8 1683 aa21.66■■□□□ 1.06
SHKBP1-208ENST00000595726 NCOA3Q9Y6Q9 1424 aa21.65■■□□□ 1.06
SHKBP1-208ENST00000595726 CROCC2H7BZ55 1655 aa21.65■■□□□ 1.06
SHKBP1-208ENST00000595726 CDK12Q9NYV4 1490 aaPredicted RBP21.64■■□□□ 1.06
SHKBP1-208ENST00000595726 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.64■■□□□ 1.06
SHKBP1-208ENST00000595726 CHGAP10645 457 aaKnown RBP21.64■■□□□ 1.05
SHKBP1-208ENST00000595726 HDGFP51858 240 aaKnown RBP21.64■■□□□ 1.05
SHKBP1-208ENST00000595726 QTRT2Q9H974 415 aaKnown RBP21.63■■□□□ 1.05
SHKBP1-208ENST00000595726 ANKRD30AQ9BXX3 1397 aa21.62■■□□□ 1.05
SHKBP1-208ENST00000595726 MYO5BQ9ULV0 1848 aa21.62■■□□□ 1.05
SHKBP1-208ENST00000595726 DIP2AQ14689 1571 aa21.61■■□□□ 1.05
SHKBP1-208ENST00000595726 C8orf37Q96NL8 207 aa21.61■■□□□ 1.05
SHKBP1-208ENST00000595726 PTPN23Q9H3S7 1636 aa21.61■■□□□ 1.05
SHKBP1-208ENST00000595726 RGS12O14924 1447 aa21.61■■□□□ 1.05
SHKBP1-208ENST00000595726 ADAMTS13Q76LX8 1427 aa21.61■■□□□ 1.05
SHKBP1-208ENST00000595726 DDX17Q92841 729 aaKnown RBP21.59■■□□□ 1.05
SHKBP1-208ENST00000595726 AMOTL2Q9Y2J4 779 aa21.59■■□□□ 1.05
SHKBP1-208ENST00000595726 LOC105371045A0A1W2PR82 267 aa21.58■■□□□ 1.05
SHKBP1-208ENST00000595726 RBM6P78332 1123 aaKnown RBP21.58■■□□□ 1.05
SHKBP1-208ENST00000595726 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.58■■□□□ 1.05
SHKBP1-208ENST00000595726 TMEM131LA2VDJ0 1609 aa21.57■■□□□ 1.04
SHKBP1-208ENST00000595726 GCC2Q8IWJ2 1684 aa21.56■■□□□ 1.04
SHKBP1-208ENST00000595726 PTPRUQ92729 1446 aa21.55■■□□□ 1.04
SHKBP1-208ENST00000595726 LRRC59Q96AG4 307 aaKnown RBP21.54■■□□□ 1.04
SHKBP1-208ENST00000595726 SETD5Q9C0A6 1442 aa21.54■■□□□ 1.04
SHKBP1-208ENST00000595726 RPRD2Q5VT52 1461 aaKnown RBP21.52■■□□□ 1.04
SHKBP1-208ENST00000595726 PIK3R4Q99570 1358 aa21.52■■□□□ 1.04
SHKBP1-208ENST00000595726 EP400Q96L91 3159 aa21.52■■□□□ 1.04
SHKBP1-208ENST00000595726 ASXL1Q8IXJ9 1541 aa21.52■■□□□ 1.04
SHKBP1-208ENST00000595726 ADAMTS2O95450 1211 aa21.52■■□□□ 1.04
SHKBP1-208ENST00000595726 NGLY1Q96IV0 654 aa21.51■■□□□ 1.03
SHKBP1-208ENST00000595726 PNPLA6Q8IY17 1366 aa21.48■■□□□ 1.03
SHKBP1-208ENST00000595726 MST1RQ04912 1400 aa21.48■■□□□ 1.03
SHKBP1-208ENST00000595726 ZRANB1Q9UGI0 708 aa21.47■■□□□ 1.03
SHKBP1-208ENST00000595726 ANKRD50Q9ULJ7 1429 aa21.46■■□□□ 1.03
SHKBP1-208ENST00000595726 ATAD2Q6PL18 1390 aa21.45■■□□□ 1.02
SHKBP1-208ENST00000595726 DCCP43146 1447 aa21.45■■□□□ 1.02
SHKBP1-208ENST00000595726 TRPM2O94759 1503 aa21.45■■□□□ 1.02
SHKBP1-208ENST00000595726 NHSL1Q5SYE7 1610 aa21.44■■□□□ 1.02
SHKBP1-208ENST00000595726 APLP2Q06481 763 aa21.43■■□□□ 1.02
SHKBP1-208ENST00000595726 ADGRL2O95490 1459 aa21.43■■□□□ 1.02
SHKBP1-208ENST00000595726 SETBP1Q9Y6X0 1596 aa21.43■■□□□ 1.02
SHKBP1-208ENST00000595726 FAM50AQ14320 339 aaKnown RBP21.42■■□□□ 1.02
SHKBP1-208ENST00000595726 USP21Q9UK80 565 aa21.42■■□□□ 1.02
SHKBP1-208ENST00000595726 UNC13BO14795 1591 aa21.4■■□□□ 1.02
SHKBP1-208ENST00000595726 METP08581 1390 aa21.39■■□□□ 1.02
SHKBP1-208ENST00000595726 TRPC5Q9UL62 973 aaPredicted RBP21.38■■□□□ 1.01
SHKBP1-208ENST00000595726 E9PCH4 1651 aa21.36■■□□□ 1.01
SHKBP1-208ENST00000595726 XRN1Q8IZH2 1706 aaKnown RBP21.35■■□□□ 1.01
SHKBP1-208ENST00000595726 FNBP4Q8N3X1 1017 aaPredicted RBP21.35■■□□□ 1.01
SHKBP1-208ENST00000595726 ORAI2Q96SN7 254 aa21.35■■□□□ 1.01
SHKBP1-208ENST00000595726 FOXD1Q16676 465 aa21.34■■□□□ 1.01
SHKBP1-208ENST00000595726 NRXN3Q9Y4C0 1643 aa21.33■■□□□ 1.01
SHKBP1-208ENST00000595726 ADGRL3Q9HAR2 1447 aa21.33■■□□□ 1.01
SHKBP1-208ENST00000595726 ZNF326Q5BKZ1 582 aaKnown RBP21.32■■□□□ 1
SHKBP1-208ENST00000595726 C1orf167Q5SNV9 1468 aa21.32■■□□□ 1
SHKBP1-208ENST00000595726 SOS2Q07890 1332 aaPredicted RBP21.3■■□□□ 1
SHKBP1-208ENST00000595726 ATRNO75882 1429 aa21.3■■□□□ 1
SHKBP1-208ENST00000595726 CCDC125Q86Z20 511 aa21.29■■□□□ 1
SHKBP1-208ENST00000595726 NALCNQ8IZF0 1738 aa21.27■■□□□ 1
SHKBP1-208ENST00000595726 NUP155O75694 1391 aa21.26■□□□□ 0.99
SHKBP1-208ENST00000595726 PTCH1Q13635 1447 aa21.26■□□□□ 0.99
SHKBP1-208ENST00000595726 BCL9LQ86UU0 1499 aa21.24■□□□□ 0.99
SHKBP1-208ENST00000595726 DEFB132Q7Z7B7 95 aa21.23■□□□□ 0.99
SHKBP1-208ENST00000595726 GJD4Q96KN9 370 aaPredicted RBP21.23■□□□□ 0.99
SHKBP1-208ENST00000595726 IQGAP3Q86VI3 1631 aa21.22■□□□□ 0.99
SHKBP1-208ENST00000595726 LAMC1P11047 1609 aa21.2■□□□□ 0.98
SHKBP1-208ENST00000595726 XPCQ01831 940 aaPredicted RBP21.2■□□□□ 0.98
SHKBP1-208ENST00000595726 ROBO2Q9HCK4 1378 aa21.2■□□□□ 0.98
SHKBP1-208ENST00000595726 MYOM2P54296 1465 aa21.17■□□□□ 0.98
SHKBP1-208ENST00000595726 ESCO1Q5FWF5 840 aa21.16■□□□□ 0.98
SHKBP1-208ENST00000595726 BLMP54132 1417 aaPredicted RBP21.15■□□□□ 0.98
SHKBP1-208ENST00000595726 FOXO3O43524 673 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms