RNA–Protein interactions for RNA: ENST00000592911.5

SMAD4-215, Transcript of SMAD family member 4, human

TSL 5

Gene SMAD4, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMAD4-215	ENST00000592911	JCAD	Q9P266	1359 aa		13.79	□□□□□ -0.2
SMAD4-215	ENST00000592911	FGD6	Q6ZV73	1430 aa		13.79	□□□□□ -0.2
SMAD4-215	ENST00000592911	RPRD2	Q5VT52	1461 aa	Known RBP	13.79	□□□□□ -0.2
SMAD4-215	ENST00000592911	ADGRB3	O60242	1522 aa		13.79	□□□□□ -0.2
SMAD4-215	ENST00000592911	SLC52A1	Q9NWF4	448 aa		13.78	□□□□□ -0.2
SMAD4-215	ENST00000592911	STAG3	Q9UJ98	1225 aa		13.78	□□□□□ -0.2
SMAD4-215	ENST00000592911	MSH6	P52701	1360 aa		13.78	□□□□□ -0.2
SMAD4-215	ENST00000592911	NOS1	P29475	1434 aa		13.78	□□□□□ -0.2
SMAD4-215	ENST00000592911	PHLPP1	O60346	1717 aa		13.78	□□□□□ -0.2
SMAD4-215	ENST00000592911	CHD2	O14647	1828 aa	Known RBP	13.78	□□□□□ -0.2
SMAD4-215	ENST00000592911	POTEA	Q6S8J7	498 aa		13.77	□□□□□ -0.21
SMAD4-215	ENST00000592911	SPATA31A6	Q5VVP1	1343 aa		13.75	□□□□□ -0.21
SMAD4-215	ENST00000592911	HDGF	P51858	240 aa	Known RBP	13.75	□□□□□ -0.21
SMAD4-215	ENST00000592911	ABCC5	O15440	1437 aa		13.74	□□□□□ -0.21
SMAD4-215	ENST00000592911	PROSER2	Q86WR7	435 aa	Predicted RBP	13.74	□□□□□ -0.21
SMAD4-215	ENST00000592911	PTPN23	Q9H3S7	1636 aa		13.74	□□□□□ -0.21
SMAD4-215	ENST00000592911	ANKRD30A	Q9BXX3	1397 aa		13.73	□□□□□ -0.21
SMAD4-215	ENST00000592911	COL16A1	Q07092	1604 aa	Predicted RBP	13.73	□□□□□ -0.21
SMAD4-215	ENST00000592911	IDI1	Q13907	227 aa		13.73	□□□□□ -0.21
SMAD4-215	ENST00000592911	DIP2A	Q14689	1571 aa		13.73	□□□□□ -0.21
SMAD4-215	ENST00000592911	DAPK1	P53355	1430 aa		13.73	□□□□□ -0.21
SMAD4-215	ENST00000592911	SHPRH	Q149N8	1683 aa		13.72	□□□□□ -0.21
SMAD4-215	ENST00000592911	PLEKHG1	Q9ULL1	1385 aa		13.72	□□□□□ -0.21
SMAD4-215	ENST00000592911	ZNF772	Q68DY9	489 aa	Predicted RBP	13.72	□□□□□ -0.21
SMAD4-215	ENST00000592911	SLAIN2	Q9P270	581 aa		13.72	□□□□□ -0.21
SMAD4-215	ENST00000592911	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.72	□□□□□ -0.21
SMAD4-215	ENST00000592911	PIK3R4	Q99570	1358 aa		13.71	□□□□□ -0.21
SMAD4-215	ENST00000592911	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.71	□□□□□ -0.21
SMAD4-215	ENST00000592911	ZFYVE9	O95405	1425 aa		13.71	□□□□□ -0.22
SMAD4-215	ENST00000592911	ADGRL2	O95490	1459 aa		13.69	□□□□□ -0.22
SMAD4-215	ENST00000592911	SETD1A	O15047	1707 aa	Known RBP	13.69	□□□□□ -0.22
SMAD4-215	ENST00000592911	TBX22	Q9Y458	520 aa		13.68	□□□□□ -0.22
SMAD4-215	ENST00000592911	MYO5B	Q9ULV0	1848 aa		13.67	□□□□□ -0.22
SMAD4-215	ENST00000592911	DCC	P43146	1447 aa		13.67	□□□□□ -0.22
SMAD4-215	ENST00000592911	GCC2	Q8IWJ2	1684 aa		13.67	□□□□□ -0.22
SMAD4-215	ENST00000592911	CADPS2	Q86UW7	1296 aa		13.67	□□□□□ -0.22
SMAD4-215	ENST00000592911	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.67	□□□□□ -0.22
SMAD4-215	ENST00000592911	SLC26A8	Q96RN1	970 aa		13.67	□□□□□ -0.22
SMAD4-215	ENST00000592911	RRP7BP	Q9NSQ0	103 aa		13.67	□□□□□ -0.22
SMAD4-215	ENST00000592911	TMEM131L	A2VDJ0	1609 aa		13.66	□□□□□ -0.22
SMAD4-215	ENST00000592911		U3KPZ7	1027 aa	Predicted RBP	13.66	□□□□□ -0.22
SMAD4-215	ENST00000592911	KANK4	Q5T7N3	995 aa	Predicted RBP	13.65	□□□□□ -0.22
SMAD4-215	ENST00000592911	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.64	□□□□□ -0.23
SMAD4-215	ENST00000592911	C19orf44	Q9H6X5	657 aa		13.64	□□□□□ -0.23
SMAD4-215	ENST00000592911	RIMS2	Q9UQ26	1411 aa		13.64	□□□□□ -0.23
SMAD4-215	ENST00000592911	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.63	□□□□□ -0.23
SMAD4-215	ENST00000592911	RNF39	Q9H2S5	420 aa		13.63	□□□□□ -0.23
SMAD4-215	ENST00000592911	LRP6	O75581	1613 aa		13.62	□□□□□ -0.23
SMAD4-215	ENST00000592911	TRPM2	O94759	1503 aa		13.61	□□□□□ -0.23
SMAD4-215	ENST00000592911	PPP1R15A	O75807	674 aa	Predicted RBP	13.61	□□□□□ -0.23
SMAD4-215	ENST00000592911	ANKRD50	Q9ULJ7	1429 aa		13.61	□□□□□ -0.23
SMAD4-215	ENST00000592911	UNC13B	O14795	1591 aa		13.6	□□□□□ -0.23
SMAD4-215	ENST00000592911	ATF3	P18847	181 aa		13.6	□□□□□ -0.23
SMAD4-215	ENST00000592911	APLP2	Q06481	763 aa		13.6	□□□□□ -0.23
SMAD4-215	ENST00000592911	MEX3C	Q5U5Q3	659 aa	Known RBP	13.6	□□□□□ -0.23
SMAD4-215	ENST00000592911	ADAMTS13	Q76LX8	1427 aa		13.6	□□□□□ -0.23
SMAD4-215	ENST00000592911	BCAN	Q96GW7	911 aa		13.6	□□□□□ -0.23
SMAD4-215	ENST00000592911	SETD5	Q9C0A6	1442 aa		13.59	□□□□□ -0.23
SMAD4-215	ENST00000592911	MYCN	P04198	464 aa	Predicted RBP	13.59	□□□□□ -0.23
SMAD4-215	ENST00000592911	RXRB	P28702	533 aa		13.59	□□□□□ -0.23
SMAD4-215	ENST00000592911	NHSL1	Q5SYE7	1610 aa		13.58	□□□□□ -0.24
SMAD4-215	ENST00000592911	C14orf37	Q86TY3	774 aa		13.56	□□□□□ -0.24
SMAD4-215	ENST00000592911	RBM33	Q96EV2	1170 aa	Known RBP	13.56	□□□□□ -0.24
SMAD4-215	ENST00000592911	IQGAP3	Q86VI3	1631 aa		13.56	□□□□□ -0.24
SMAD4-215	ENST00000592911	XRN1	Q8IZH2	1706 aa	Known RBP	13.56	□□□□□ -0.24
SMAD4-215	ENST00000592911	SETBP1	Q9Y6X0	1596 aa		13.55	□□□□□ -0.24
SMAD4-215	ENST00000592911	ASXL1	Q8IXJ9	1541 aa		13.54	□□□□□ -0.24
SMAD4-215	ENST00000592911		E9PCH4	1651 aa		13.54	□□□□□ -0.24
SMAD4-215	ENST00000592911	BRINP3	Q76B58	766 aa		13.54	□□□□□ -0.24
SMAD4-215	ENST00000592911	LAMC1	P11047	1609 aa		13.53	□□□□□ -0.24
SMAD4-215	ENST00000592911	LRRC59	Q96AG4	307 aa	Known RBP	13.53	□□□□□ -0.24
SMAD4-215	ENST00000592911	ROCK1	Q13464	1354 aa		13.52	□□□□□ -0.25
SMAD4-215	ENST00000592911	MST1R	Q04912	1400 aa		13.51	□□□□□ -0.25
SMAD4-215	ENST00000592911	RBM6	P78332	1123 aa	Known RBP	13.51	□□□□□ -0.25
SMAD4-215	ENST00000592911	TRIM52	Q96A61	297 aa		13.51	□□□□□ -0.25
SMAD4-215	ENST00000592911	CHIC2	Q9UKJ5	165 aa		13.51	□□□□□ -0.25
SMAD4-215	ENST00000592911	AFF2	P51816	1311 aa		13.5	□□□□□ -0.25
SMAD4-215	ENST00000592911	AMOTL2	Q9Y2J4	779 aa		13.5	□□□□□ -0.25
SMAD4-215	ENST00000592911	NRXN3	Q9Y4C0	1643 aa		13.5	□□□□□ -0.25
SMAD4-215	ENST00000592911	NGLY1	Q96IV0	654 aa		13.49	□□□□□ -0.25
SMAD4-215	ENST00000592911	ADGRL3	Q9HAR2	1447 aa		13.48	□□□□□ -0.25
SMAD4-215	ENST00000592911	RGS12	O14924	1447 aa		13.47	□□□□□ -0.25
SMAD4-215	ENST00000592911	PTPRU	Q92729	1446 aa		13.47	□□□□□ -0.25
SMAD4-215	ENST00000592911	SRCAP	Q6ZRS2	3230 aa		13.47	□□□□□ -0.25
SMAD4-215	ENST00000592911	ATAD2	Q6PL18	1390 aa		13.47	□□□□□ -0.25
SMAD4-215	ENST00000592911	PRAG1	Q86YV5	1406 aa		13.47	□□□□□ -0.25
SMAD4-215	ENST00000592911	PNPLA6	Q8IY17	1366 aa		13.46	□□□□□ -0.25
SMAD4-215	ENST00000592911	SPHKAP	Q2M3C7	1700 aa		13.46	□□□□□ -0.25
SMAD4-215	ENST00000592911	PTCH1	Q13635	1447 aa		13.45	□□□□□ -0.26
SMAD4-215	ENST00000592911	CHGA	P10645	457 aa	Known RBP	13.44	□□□□□ -0.26
SMAD4-215	ENST00000592911	CCDC125	Q86Z20	511 aa		13.44	□□□□□ -0.26
SMAD4-215	ENST00000592911	QTRT2	Q9H974	415 aa	Known RBP	13.44	□□□□□ -0.26
SMAD4-215	ENST00000592911	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.43	□□□□□ -0.26
SMAD4-215	ENST00000592911	C1QBP	Q07021	282 aa	Known RBP	13.43	□□□□□ -0.26
SMAD4-215	ENST00000592911	NALCN	Q8IZF0	1738 aa		13.43	□□□□□ -0.26
SMAD4-215	ENST00000592911	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.42	□□□□□ -0.26
SMAD4-215	ENST00000592911	NUTM2E	B1AL46	878 aa	Predicted RBP	13.42	□□□□□ -0.26
SMAD4-215	ENST00000592911	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.42	□□□□□ -0.26
SMAD4-215	ENST00000592911	FAM50A	Q14320	339 aa	Known RBP	13.41	□□□□□ -0.26
SMAD4-215	ENST00000592911	C8orf37	Q96NL8	207 aa		13.41	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms