RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 KNSTRNQ9Y448 316 aa19.48■□□□□ 0.71
SMARCA4-219ENST00000592604 MADDQ8WXG6 1647 aa19.47■□□□□ 0.71
SMARCA4-219ENST00000592604 AMER1Q5JTC6 1135 aaPredicted RBP19.47■□□□□ 0.71
SMARCA4-219ENST00000592604 SYNMO15061 1565 aa19.46■□□□□ 0.71
SMARCA4-219ENST00000592604 SKAP1Q86WV1 359 aa19.46■□□□□ 0.71
SMARCA4-219ENST00000592604 PKNOX2Q96KN3 472 aa19.46■□□□□ 0.71
SMARCA4-219ENST00000592604 WDR43Q15061 677 aaKnown RBP eCLIP19.45■□□□□ 0.7
SMARCA4-219ENST00000592604 CDCA8Q53HL2 280 aa19.45■□□□□ 0.7
SMARCA4-219ENST00000592604 PIK3C2GO75747 1445 aa19.44■□□□□ 0.7
SMARCA4-219ENST00000592604 GOLGA2Q08379 1002 aa19.44■□□□□ 0.7
SMARCA4-219ENST00000592604 STAC3Q96MF2 364 aa19.44■□□□□ 0.7
SMARCA4-219ENST00000592604 NPC1L1Q9UHC9 1359 aa19.43■□□□□ 0.7
SMARCA4-219ENST00000592604 ASXL1Q8IXJ9 1541 aa19.42■□□□□ 0.7
SMARCA4-219ENST00000592604 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.42■□□□□ 0.7
SMARCA4-219ENST00000592604 SCAPERQ9BY12 1400 aa19.42■□□□□ 0.7
SMARCA4-219ENST00000592604 SPHKAPQ2M3C7 1700 aa19.41■□□□□ 0.7
SMARCA4-219ENST00000592604 TRMT2AQ8IZ69 625 aaKnown RBP19.41■□□□□ 0.7
SMARCA4-219ENST00000592604 SCAF11Q99590 1463 aaKnown RBP19.41■□□□□ 0.7
SMARCA4-219ENST00000592604 SLFN5Q08AF3 891 aa19.41■□□□□ 0.7
SMARCA4-219ENST00000592604 SHROOM2Q13796 1616 aa19.41■□□□□ 0.7
SMARCA4-219ENST00000592604 ABCC2Q92887 1545 aa19.4■□□□□ 0.7
SMARCA4-219ENST00000592604 PLCH2O75038 1416 aa19.4■□□□□ 0.7
SMARCA4-219ENST00000592604 FAM161AQ3B820 660 aa19.39■□□□□ 0.7
SMARCA4-219ENST00000592604 TRPM2O94759 1503 aa19.39■□□□□ 0.69
SMARCA4-219ENST00000592604 CEP152O94986 1710 aa19.39■□□□□ 0.69
SMARCA4-219ENST00000592604 MYOM1P52179 1685 aa19.38■□□□□ 0.69
SMARCA4-219ENST00000592604 C8orf34Q49A92 452 aa19.38■□□□□ 0.69
SMARCA4-219ENST00000592604 PTPRTO14522 1441 aa19.37■□□□□ 0.69
SMARCA4-219ENST00000592604 EIF3AQ14152 1382 aaKnown RBP19.36■□□□□ 0.69
SMARCA4-219ENST00000592604 ABCC1P33527 1531 aa19.36■□□□□ 0.69
SMARCA4-219ENST00000592604 EFCAB2Q5VUJ9 269 aa19.35■□□□□ 0.69
SMARCA4-219ENST00000592604 KIAA1210Q9ULL0 1709 aa19.34■□□□□ 0.69
SMARCA4-219ENST00000592604 CHD1O14646 1710 aa19.33■□□□□ 0.69
SMARCA4-219ENST00000592604 NKTRP30414 1462 aaKnown RBP19.33■□□□□ 0.68
SMARCA4-219ENST00000592604 NFKBIBQ15653 356 aa19.33■□□□□ 0.68
SMARCA4-219ENST00000592604 TRAPPC8Q9Y2L5 1435 aa19.33■□□□□ 0.68
SMARCA4-219ENST00000592604 IL27Q8NEV9 243 aa19.32■□□□□ 0.68
SMARCA4-219ENST00000592604 CLTCL1P53675 1640 aa19.32■□□□□ 0.68
SMARCA4-219ENST00000592604 NGEFQ8N5V2 710 aa19.31■□□□□ 0.68
SMARCA4-219ENST00000592604 KDM5AP29375 1690 aaKnown RBP19.31■□□□□ 0.68
SMARCA4-219ENST00000592604 RTEL1-TNFRSF6BF6WH68 1400 aa19.31■□□□□ 0.68
SMARCA4-219ENST00000592604 NEURL4Q96JN8 1562 aa19.3■□□□□ 0.68
SMARCA4-219ENST00000592604 DEPDC5O75140 1603 aa19.3■□□□□ 0.68
SMARCA4-219ENST00000592604 GSE1Q14687 1217 aa19.29■□□□□ 0.68
SMARCA4-219ENST00000592604 SPINK5Q9NQ38 1064 aaPredicted RBP19.29■□□□□ 0.68
SMARCA4-219ENST00000592604 E9PSI1 815 aa19.28■□□□□ 0.68
SMARCA4-219ENST00000592604 SLC4A3P48751 1232 aa19.28■□□□□ 0.68
SMARCA4-219ENST00000592604 TET3O43151 1660 aa19.28■□□□□ 0.68
SMARCA4-219ENST00000592604 APAF1O14727 1248 aa19.28■□□□□ 0.68
SMARCA4-219ENST00000592604 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.28■□□□□ 0.68
SMARCA4-219ENST00000592604 CCDC146Q8IYE0 955 aa19.28■□□□□ 0.68
SMARCA4-219ENST00000592604 ERCC6L2Q5T890 1561 aa19.27■□□□□ 0.67
SMARCA4-219ENST00000592604 SPAG9O60271 1321 aaKnown RBP19.26■□□□□ 0.67
SMARCA4-219ENST00000592604 VIRMAQ69YN4 1812 aaKnown RBP19.25■□□□□ 0.67
SMARCA4-219ENST00000592604 ZCCHC11Q5TAX3 1644 aaKnown RBP19.25■□□□□ 0.67
SMARCA4-219ENST00000592604 ZFYVE16Q7Z3T8 1539 aa19.25■□□□□ 0.67
SMARCA4-219ENST00000592604 BCAR3O75815 825 aa19.24■□□□□ 0.67
SMARCA4-219ENST00000592604 RGS3P49796 1198 aa19.24■□□□□ 0.67
SMARCA4-219ENST00000592604 VWDEQ8N2E2 1590 aa19.24■□□□□ 0.67
SMARCA4-219ENST00000592604 ARAP3Q8WWN8 1544 aa19.24■□□□□ 0.67
SMARCA4-219ENST00000592604 PDE3AQ14432 1141 aa19.24■□□□□ 0.67
SMARCA4-219ENST00000592604 ERVK-7P63135 1459 aa19.24■□□□□ 0.67
SMARCA4-219ENST00000592604 UHRF1BP1LA0JNW5 1464 aa19.23■□□□□ 0.67
SMARCA4-219ENST00000592604 NINLQ9Y2I6 1382 aa19.23■□□□□ 0.67
SMARCA4-219ENST00000592604 CGNL1Q0VF96 1302 aa19.22■□□□□ 0.67
SMARCA4-219ENST00000592604 MYOM2P54296 1465 aa19.21■□□□□ 0.67
SMARCA4-219ENST00000592604 MAP3K4Q9Y6R4 1608 aa19.21■□□□□ 0.67
SMARCA4-219ENST00000592604 CARD14Q9BXL6 1004 aa19.21■□□□□ 0.67
SMARCA4-219ENST00000592604 POLR3AO14802 1390 aaPredicted RBP19.2■□□□□ 0.66
SMARCA4-219ENST00000592604 IGHDP01880 384 aa19.2■□□□□ 0.66
SMARCA4-219ENST00000592604 AFAP1Q8N556 730 aa19.19■□□□□ 0.66
SMARCA4-219ENST00000592604 DMRT2Q9Y5R5 561 aa19.19■□□□□ 0.66
SMARCA4-219ENST00000592604 KANK1Q14678 1352 aa19.19■□□□□ 0.66
SMARCA4-219ENST00000592604 ABCA6Q8N139 1617 aa19.18■□□□□ 0.66
SMARCA4-219ENST00000592604 FRAT1Q92837 279 aaPredicted RBP19.18■□□□□ 0.66
SMARCA4-219ENST00000592604 USP19O94966 1318 aa19.17■□□□□ 0.66
SMARCA4-219ENST00000592604 SBNO2Q9Y2G9 1366 aa19.17■□□□□ 0.66
SMARCA4-219ENST00000592604 CFAP70Q5T0N1 1121 aa19.17■□□□□ 0.66
SMARCA4-219ENST00000592604 MYO3AQ8NEV4 1616 aa19.17■□□□□ 0.66
SMARCA4-219ENST00000592604 CENPJQ9HC77 1338 aaPredicted RBP19.16■□□□□ 0.66
SMARCA4-219ENST00000592604 MAPK8IP3Q9UPT6 1336 aa19.16■□□□□ 0.66
SMARCA4-219ENST00000592604 WWC1Q8IX03 1113 aa19.16■□□□□ 0.66
SMARCA4-219ENST00000592604 CLUAP1Q96AJ1 413 aa19.16■□□□□ 0.66
SMARCA4-219ENST00000592604 IFT172Q9UG01 1749 aa19.15■□□□□ 0.66
SMARCA4-219ENST00000592604 INO80Q9ULG1 1556 aaPredicted RBP19.15■□□□□ 0.66
SMARCA4-219ENST00000592604 RTN4Q9NQC3 1192 aaKnown RBP19.14■□□□□ 0.66
SMARCA4-219ENST00000592604 KIF1BO60333 1816 aa19.14■□□□□ 0.65
SMARCA4-219ENST00000592604 ATP7AQ04656 1500 aa19.14■□□□□ 0.65
SMARCA4-219ENST00000592604 FRAT2O75474 233 aaPredicted RBP19.14■□□□□ 0.65
SMARCA4-219ENST00000592604 AAMPQ13685 434 aa19.14■□□□□ 0.65
SMARCA4-219ENST00000592604 ADGRF5Q8IZF2 1346 aa19.14■□□□□ 0.65
SMARCA4-219ENST00000592604 NRXN1Q9ULB1 1477 aa19.13■□□□□ 0.65
SMARCA4-219ENST00000592604 BRPF3Q9ULD4 1205 aa19.13■□□□□ 0.65
SMARCA4-219ENST00000592604 SHPRHQ149N8 1683 aa19.12■□□□□ 0.65
SMARCA4-219ENST00000592604 MROH1Q8NDA8 1641 aa19.11■□□□□ 0.65
SMARCA4-219ENST00000592604 COG6Q9Y2V7 657 aa19.11■□□□□ 0.65
SMARCA4-219ENST00000592604 PANK1Q8TE04 598 aa19.1■□□□□ 0.65
SMARCA4-219ENST00000592604 ZMYM3Q14202 1370 aa19.1■□□□□ 0.65
SMARCA4-219ENST00000592604 PHF23Q9BUL5 403 aaPredicted RBP19.1■□□□□ 0.65
SMARCA4-219ENST00000592604 UGGT1Q9NYU2 1555 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms