RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 ZNF142P52746 1687 aaPredicted RBP15.37■□□□□ 0.05
SS18-213ENST00000579640 CEP170BQ9Y4F5 1589 aaPredicted RBP15.37■□□□□ 0.05
SS18-213ENST00000579640 NEXMIFQ5QGS0 1516 aa15.37■□□□□ 0.05
SS18-213ENST00000579640 KDM2AQ9Y2K7 1162 aa15.36■□□□□ 0.05
SS18-213ENST00000579640 ZFYVE9O95405 1425 aa15.35■□□□□ 0.05
SS18-213ENST00000579640 PRAG1Q86YV5 1406 aa15.35■□□□□ 0.05
SS18-213ENST00000579640 HDGFP51858 240 aaKnown RBP15.34■□□□□ 0.05
SS18-213ENST00000579640 VGFO15240 615 aaPredicted RBP15.33■□□□□ 0.05
SS18-213ENST00000579640 THEMISQ8N1K5 641 aaPredicted RBP15.33■□□□□ 0.05
SS18-213ENST00000579640 NRXN1Q9ULB1 1477 aa15.33■□□□□ 0.05
SS18-213ENST00000579640 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.33■□□□□ 0.04
SS18-213ENST00000579640 TMEM2Q9UHN6 1383 aa15.33■□□□□ 0.04
SS18-213ENST00000579640 RIMS2Q9UQ26 1411 aa15.33■□□□□ 0.04
SS18-213ENST00000579640 SLIT1O75093 1534 aa15.32■□□□□ 0.04
SS18-213ENST00000579640 NBPF8Q3BBV2 869 aa15.31■□□□□ 0.04
SS18-213ENST00000579640 ARHGAP23Q9P227 1491 aa15.31■□□□□ 0.04
SS18-213ENST00000579640 RALGAPBQ86X10 1494 aa15.3■□□□□ 0.04
SS18-213ENST00000579640 KIAA1210Q9ULL0 1709 aa15.3■□□□□ 0.04
SS18-213ENST00000579640 ADGRF5Q8IZF2 1346 aa15.29■□□□□ 0.04
SS18-213ENST00000579640 PIK3C2GO75747 1445 aa15.29■□□□□ 0.04
SS18-213ENST00000579640 TRPM1Q7Z4N2 1603 aa15.29■□□□□ 0.04
SS18-213ENST00000579640 EID1Q9Y6B2 187 aa15.27■□□□□ 0.04
SS18-213ENST00000579640 LAMC1P11047 1609 aa15.26■□□□□ 0.03
SS18-213ENST00000579640 NUTM2DQ5VT03 806 aaPredicted RBP15.25■□□□□ 0.03
SS18-213ENST00000579640 TXNDC2Q86VQ3 553 aa15.24■□□□□ 0.03
SS18-213ENST00000579640 GPRASP1Q5JY77 1395 aa15.24■□□□□ 0.03
SS18-213ENST00000579640 SCAF11Q99590 1463 aaKnown RBP15.24■□□□□ 0.03
SS18-213ENST00000579640 C14orf93Q9H972 538 aaKnown RBP15.24■□□□□ 0.03
SS18-213ENST00000579640 ROCK2O75116 1388 aaKnown RBP15.24■□□□□ 0.03
SS18-213ENST00000579640 PLEKHG1Q9ULL1 1385 aa15.24■□□□□ 0.03
SS18-213ENST00000579640 SETBP1Q9Y6X0 1596 aa15.23■□□□□ 0.03
SS18-213ENST00000579640 LTKP29376 864 aa15.22■□□□□ 0.03
SS18-213ENST00000579640 ANKLE2Q86XL3 938 aa15.22■□□□□ 0.03
SS18-213ENST00000579640 CFAP70Q5T0N1 1121 aa15.22■□□□□ 0.03
SS18-213ENST00000579640 CARD11Q9BXL7 1154 aa15.2■□□□□ 0.02
SS18-213ENST00000579640 ALKQ9UM73 1620 aa15.2■□□□□ 0.02
SS18-213ENST00000579640 NRXN3Q9Y4C0 1643 aa15.2■□□□□ 0.02
SS18-213ENST00000579640 LMTK3Q96Q04 1460 aa15.2■□□□□ 0.02
SS18-213ENST00000579640 NBPF1Q3BBV0 1214 aa15.2■□□□□ 0.02
SS18-213ENST00000579640 IQGAP1P46940 1657 aa15.19■□□□□ 0.02
SS18-213ENST00000579640 POLR1AO95602 1720 aaPredicted RBP15.19■□□□□ 0.02
SS18-213ENST00000579640 ADGRB1O14514 1584 aa15.18■□□□□ 0.02
SS18-213ENST00000579640 DIP2AQ14689 1571 aa15.18■□□□□ 0.02
SS18-213ENST00000579640 EIF4G2P78344 907 aaKnown RBP eCLIP15.17■□□□□ 0.02
SS18-213ENST00000579640 BCANQ96GW7 911 aa15.17■□□□□ 0.02
SS18-213ENST00000579640 SETD1AO15047 1707 aaKnown RBP15.17■□□□□ 0.02
SS18-213ENST00000579640 MED14O60244 1454 aa15.17■□□□□ 0.02
SS18-213ENST00000579640 ADAMTS13Q76LX8 1427 aa15.16■□□□□ 0.02
SS18-213ENST00000579640 USP47Q96K76 1375 aa15.16■□□□□ 0.02
SS18-213ENST00000579640 TBX22Q9Y458 520 aa15.15■□□□□ 0.02
SS18-213ENST00000579640 NPHP4O75161 1426 aaPredicted RBP15.15■□□□□ 0.02
SS18-213ENST00000579640 ASXL1Q8IXJ9 1541 aa15.15■□□□□ 0.02
SS18-213ENST00000579640 EIF3AQ14152 1382 aaKnown RBP15.14■□□□□ 0.01
SS18-213ENST00000579640 NCKAP5LQ9HCH0 1330 aa15.12■□□□□ 0.01
SS18-213ENST00000579640 HSPA5P11021 654 aaKnown RBP15.12■□□□□ 0.01
SS18-213ENST00000579640 HSPA2P54652 639 aa15.12■□□□□ 0.01
SS18-213ENST00000579640 TMEM132EQ6IEE7 984 aa15.12■□□□□ 0.01
SS18-213ENST00000579640 YTHDC2Q9H6S0 1430 aaKnown RBP15.11■□□□□ 0.01
SS18-213ENST00000579640 LRPPRCP42704 1394 aaKnown RBP15.11■□□□□ 0.01
SS18-213ENST00000579640 PIK3R4Q99570 1358 aa15.11■□□□□ 0.01
SS18-213ENST00000579640 SENP3Q9H4L4 574 aaPredicted RBP15.11■□□□□ 0.01
SS18-213ENST00000579640 METP08581 1390 aa15.1■□□□□ 0.01
SS18-213ENST00000579640 SLC26A8Q96RN1 970 aa15.1■□□□□ 0.01
SS18-213ENST00000579640 ABCC11Q96J66 1382 aa15.09■□□□□ 0.01
SS18-213ENST00000579640 DLC1Q96QB1 1528 aa15.09■□□□□ 0.01
SS18-213ENST00000579640 ZNF316A6NFI3 1004 aaPredicted RBP15.09■□□□□ 0.01
SS18-213ENST00000579640 KNDC1Q76NI1 1749 aa15.09■□□□□ 0.01
SS18-213ENST00000579640 ARHGEF28Q8N1W1 1705 aaKnown RBP15.08■□□□□ 0
SS18-213ENST00000579640 TECPR2O15040 1411 aa15.08■□□□□ 0
SS18-213ENST00000579640 ST20-MTHFSA0A0A6YYL1 179 aa15.08■□□□□ 0
SS18-213ENST00000579640 TRAK1Q9UPV9 953 aa15.08■□□□□ 0
SS18-213ENST00000579640 STRCQ7RTU9 1775 aa15.08■□□□□ 0
SS18-213ENST00000579640 SLC24A1O60721 1099 aa15.07■□□□□ 0
SS18-213ENST00000579640 SIRT1Q96EB6 747 aa15.06■□□□□ 0
SS18-213ENST00000579640 STK26Q9P289 416 aa15.06■□□□□ 0
SS18-213ENST00000579640 CPS1P31327 1500 aa15.05■□□□□ 0
SS18-213ENST00000579640 CENPJQ9HC77 1338 aaPredicted RBP15.05■□□□□ 0
SS18-213ENST00000579640 SBNO2Q9Y2G9 1366 aa15.05■□□□□ -0
SS18-213ENST00000579640 HIRIP3Q9BW71 556 aaPredicted RBP15.04■□□□□ -0
SS18-213ENST00000579640 FAM135BQ49AJ0 1406 aa15.04■□□□□ -0
SS18-213ENST00000579640 PTPRUQ92729 1446 aa15.04■□□□□ -0
SS18-213ENST00000579640 CHD2O14647 1828 aaKnown RBP15.04■□□□□ -0
SS18-213ENST00000579640 XRN1Q8IZH2 1706 aaKnown RBP15.04■□□□□ -0
SS18-213ENST00000579640 PTCH1Q13635 1447 aa15.03■□□□□ -0
SS18-213ENST00000579640 AMOTL2Q9Y2J4 779 aa15.03■□□□□ -0
SS18-213ENST00000579640 DMRT2Q9Y5R5 561 aa15.03■□□□□ -0
SS18-213ENST00000579640 TESK2Q96S53 571 aa15.02■□□□□ -0
SS18-213ENST00000579640 QRICH2Q9H0J4 1663 aa15.02□□□□□ -0.01
SS18-213ENST00000579640 NWD1Q149M9 1564 aa15.02□□□□□ -0.01
SS18-213ENST00000579640 POGKQ9P215 609 aa15.01□□□□□ -0.01
SS18-213ENST00000579640 KCNA6P17658 529 aa15.01□□□□□ -0.01
SS18-213ENST00000579640 PRAM1Q96QH2 718 aa15.01□□□□□ -0.01
SS18-213ENST00000579640 TMF1P82094 1093 aa15□□□□□ -0.01
SS18-213ENST00000579640 ROBO2Q9HCK4 1378 aa14.99□□□□□ -0.01
SS18-213ENST00000579640 CDCA8Q53HL2 280 aa14.98□□□□□ -0.01
SS18-213ENST00000579640 NKTRP30414 1462 aaKnown RBP14.97□□□□□ -0.01
SS18-213ENST00000579640 WAPLQ7Z5K2 1190 aa14.96□□□□□ -0.01
SS18-213ENST00000579640 CCDC7Q96M83 1385 aa14.96□□□□□ -0.01
SS18-213ENST00000579640 PLEKHH1Q9ULM0 1364 aa14.96□□□□□ -0.01
SS18-213ENST00000579640 KIF7Q2M1P5 1343 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms