RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 UBAP1LF5GYI3 381 aa35.76■■■■□ 3.32
SHMT1-206ENST00000579558 BCANQ96GW7 911 aa35.76■■■■□ 3.32
SHMT1-206ENST00000579558 TRPM2O94759 1503 aa35.76■■■■□ 3.31
SHMT1-206ENST00000579558 ABCF1Q8NE71 845 aaKnown RBP eCLIP35.74■■■■□ 3.31
SHMT1-206ENST00000579558 SLC26A8Q96RN1 970 aa35.74■■■■□ 3.31
SHMT1-206ENST00000579558 PLEKHG1Q9ULL1 1385 aa35.74■■■■□ 3.31
SHMT1-206ENST00000579558 CLTCL1P53675 1640 aa35.72■■■■□ 3.31
SHMT1-206ENST00000579558 SENP3Q9H4L4 574 aaPredicted RBP35.71■■■■□ 3.31
SHMT1-206ENST00000579558 LRRC7Q96NW7 1537 aa35.71■■■■□ 3.31
SHMT1-206ENST00000579558 NUTM2DQ5VT03 806 aaPredicted RBP35.68■■■■□ 3.3
SHMT1-206ENST00000579558 SETD5Q9C0A6 1442 aa35.67■■■■□ 3.3
SHMT1-206ENST00000579558 ZNF326Q5BKZ1 582 aaKnown RBP35.64■■■■□ 3.3
SHMT1-206ENST00000579558 KIF1BO60333 1816 aa35.63■■■■□ 3.29
SHMT1-206ENST00000579558 KCNA6P17658 529 aa35.62■■■■□ 3.29
SHMT1-206ENST00000579558 TOM1O60784 492 aa35.61■■■■□ 3.29
SHMT1-206ENST00000579558 ACIN1Q9UKV3 1341 aaKnown RBP35.59■■■■□ 3.29
SHMT1-206ENST00000579558 FOXD1Q16676 465 aa35.59■■■■□ 3.29
SHMT1-206ENST00000579558 MPHOSPH9Q99550 1183 aa35.59■■■■□ 3.29
SHMT1-206ENST00000579558 NWD1Q149M9 1564 aa35.57■■■■□ 3.28
SHMT1-206ENST00000579558 TBX22Q9Y458 520 aa35.56■■■■□ 3.28
SHMT1-206ENST00000579558 ADAMTS13Q76LX8 1427 aa35.56■■■■□ 3.28
SHMT1-206ENST00000579558 DIP2AQ14689 1571 aa35.55■■■■□ 3.28
SHMT1-206ENST00000579558 XIRP1Q702N8 1843 aaKnown RBP35.55■■■■□ 3.28
SHMT1-206ENST00000579558 RAB3GAP2Q9H2M9 1393 aa35.54■■■■□ 3.28
SHMT1-206ENST00000579558 SCAF1Q9H7N4 1312 aaKnown RBP35.54■■■■□ 3.28
SHMT1-206ENST00000579558 PIP4K2BP78356 416 aa35.53■■■■□ 3.28
SHMT1-206ENST00000579558 NKTRP30414 1462 aaKnown RBP35.53■■■■□ 3.28
SHMT1-206ENST00000579558 CHD2O14647 1828 aaKnown RBP35.52■■■■□ 3.28
SHMT1-206ENST00000579558 NEXMIFQ5QGS0 1516 aa35.52■■■■□ 3.28
SHMT1-206ENST00000579558 PROSER2Q86WR7 435 aaPredicted RBP35.5■■■■□ 3.27
SHMT1-206ENST00000579558 TMEM94Q12767 1356 aa35.5■■■■□ 3.27
SHMT1-206ENST00000579558 ALKQ9UM73 1620 aa35.5■■■■□ 3.27
SHMT1-206ENST00000579558 SETBP1Q9Y6X0 1596 aa35.47■■■■□ 3.27
SHMT1-206ENST00000579558 CCDC144AA2RUR9 1427 aa35.46■■■■□ 3.27
SHMT1-206ENST00000579558 NRXN3Q9Y4C0 1643 aa35.46■■■■□ 3.27
SHMT1-206ENST00000579558 PIK3R4Q99570 1358 aa35.44■■■■□ 3.26
SHMT1-206ENST00000579558 RBM33Q96EV2 1170 aaKnown RBP35.43■■■■□ 3.26
SHMT1-206ENST00000579558 DISP3Q9P2K9 1392 aa35.42■■■■□ 3.26
SHMT1-206ENST00000579558 RPGRIP1LQ68CZ1 1315 aa35.38■■■■□ 3.25
SHMT1-206ENST00000579558 VGFO15240 615 aaPredicted RBP35.36■■■■□ 3.25
SHMT1-206ENST00000579558 PPLO60437 1756 aa35.36■■■■□ 3.25
SHMT1-206ENST00000579558 PTPRUQ92729 1446 aa35.34■■■■□ 3.25
SHMT1-206ENST00000579558 AMOTL2Q9Y2J4 779 aa35.33■■■■□ 3.25
SHMT1-206ENST00000579558 HSPA1LP34931 641 aa35.32■■■■□ 3.24
SHMT1-206ENST00000579558 MSH6P52701 1360 aa35.31■■■■□ 3.24
SHMT1-206ENST00000579558 SPATA31E1Q6ZUB1 1445 aa35.31■■■■□ 3.24
SHMT1-206ENST00000579558 METP08581 1390 aa35.3■■■■□ 3.24
SHMT1-206ENST00000579558 HRCP23327 699 aa35.3■■■■□ 3.24
SHMT1-206ENST00000579558 RGL3Q3MIN7 710 aa35.29■■■■□ 3.24
SHMT1-206ENST00000579558 ILDR2Q71H61 639 aa35.29■■■■□ 3.24
SHMT1-206ENST00000579558 XRN1Q8IZH2 1706 aaKnown RBP35.28■■■■□ 3.24
SHMT1-206ENST00000579558 NCOA3Q9Y6Q9 1424 aa35.27■■■■□ 3.24
SHMT1-206ENST00000579558 C14orf37Q86TY3 774 aa35.25■■■■□ 3.23
SHMT1-206ENST00000579558 IFT172Q9UG01 1749 aa35.22■■■■□ 3.23
SHMT1-206ENST00000579558 SETD1AO15047 1707 aaKnown RBP35.21■■■■□ 3.23
SHMT1-206ENST00000579558 ANKRD30BQ9BXX2 1392 aa35.2■■■■□ 3.23
SHMT1-206ENST00000579558 FAM135BQ49AJ0 1406 aa35.18■■■■□ 3.22
SHMT1-206ENST00000579558 ADGRF5Q8IZF2 1346 aa35.17■■■■□ 3.22
SHMT1-206ENST00000579558 SIPA1L2Q9P2F8 1722 aaPredicted RBP35.15■■■■□ 3.22
SHMT1-206ENST00000579558 C19orf44Q9H6X5 657 aa35.14■■■■□ 3.22
SHMT1-206ENST00000579558 ROBO1Q9Y6N7 1651 aa35.14■■■■□ 3.22
SHMT1-206ENST00000579558 SLAIN2Q9P270 581 aa35.13■■■■□ 3.21
SHMT1-206ENST00000579558 ATF3P18847 181 aa35.09■■■■□ 3.21
SHMT1-206ENST00000579558 CADPS2Q86UW7 1296 aa35.09■■■■□ 3.21
SHMT1-206ENST00000579558 PIK3C2GO75747 1445 aa35.06■■■■□ 3.2
SHMT1-206ENST00000579558 PTCH1Q13635 1447 aa35.06■■■■□ 3.2
SHMT1-206ENST00000579558 DCCP43146 1447 aa35.04■■■■□ 3.2
SHMT1-206ENST00000579558 PRAG1Q86YV5 1406 aa35.02■■■■□ 3.2
SHMT1-206ENST00000579558 ADGRL3Q9HAR2 1447 aa35.02■■■■□ 3.2
SHMT1-206ENST00000579558 MYOM2P54296 1465 aa35.02■■■■□ 3.2
SHMT1-206ENST00000579558 ROBO2Q9HCK4 1378 aa35.01■■■■□ 3.2
SHMT1-206ENST00000579558 SOCS7O14512 581 aa35.01■■■■□ 3.2
SHMT1-206ENST00000579558 NALCNQ8IZF0 1738 aa35■■■■□ 3.19
SHMT1-206ENST00000579558 NRXN1Q9ULB1 1477 aa34.97■■■■□ 3.19
SHMT1-206ENST00000579558 MED1Q15648 1581 aaPredicted RBP34.96■■■■□ 3.19
SHMT1-206ENST00000579558 ASXL1Q8IXJ9 1541 aa34.96■■■■□ 3.19
SHMT1-206ENST00000579558 PHLPP1O60346 1717 aa34.93■■■■□ 3.18
SHMT1-206ENST00000579558 TMEM132EQ6IEE7 984 aa34.93■■■■□ 3.18
SHMT1-206ENST00000579558 LAMC1P11047 1609 aa34.92■■■■□ 3.18
SHMT1-206ENST00000579558 LRPPRCP42704 1394 aaKnown RBP34.92■■■■□ 3.18
SHMT1-206ENST00000579558 STK26Q9P289 416 aa34.92■■■■□ 3.18
SHMT1-206ENST00000579558 MST1RQ04912 1400 aa34.91■■■■□ 3.18
SHMT1-206ENST00000579558 C14orf93Q9H972 538 aaKnown RBP34.91■■■■□ 3.18
SHMT1-206ENST00000579558 KNDC1Q76NI1 1749 aa34.89■■■■□ 3.18
SHMT1-206ENST00000579558 TECPR2O15040 1411 aa34.89■■■■□ 3.18
SHMT1-206ENST00000579558 CFAP70Q5T0N1 1121 aa34.88■■■■□ 3.17
SHMT1-206ENST00000579558 DCAF11Q8TEB1 546 aa34.87■■■■□ 3.17
SHMT1-206ENST00000579558 KDM2AQ9Y2K7 1162 aa34.87■■■■□ 3.17
SHMT1-206ENST00000579558 YTHDC2Q9H6S0 1430 aaKnown RBP34.87■■■■□ 3.17
SHMT1-206ENST00000579558 ABCC11Q96J66 1382 aa34.87■■■■□ 3.17
SHMT1-206ENST00000579558 BRINP3Q76B58 766 aa34.86■■■■□ 3.17
SHMT1-206ENST00000579558 AHDC1Q5TGY3 1603 aaPredicted RBP34.84■■■■□ 3.17
SHMT1-206ENST00000579558 COL16A1Q07092 1604 aaPredicted RBP34.83■■■■□ 3.17
SHMT1-206ENST00000579558 STAC3Q96MF2 364 aa34.81■■■■□ 3.16
SHMT1-206ENST00000579558 DHX57Q6P158 1386 aaKnown RBP34.81■■■■□ 3.16
SHMT1-206ENST00000579558 WAPLQ7Z5K2 1190 aa34.8■■■■□ 3.16
SHMT1-206ENST00000579558 C1orf167Q5SNV9 1468 aa34.78■■■■□ 3.16
SHMT1-206ENST00000579558 PLEKHH1Q9ULM0 1364 aa34.76■■■■□ 3.16
SHMT1-206ENST00000579558 CDC42BPGQ6DT37 1551 aa34.76■■■■□ 3.16
SHMT1-206ENST00000579558 JCADQ9P266 1359 aa34.75■■■■□ 3.15
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms