RNA–Protein interactions for RNA: ENST00000576921.1

HCFC1R1-209, Transcript of host cell factor C1 regulator 1, human

TSL 1 (best)

Gene HCFC1R1, Length 1,199 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HCFC1R1-209	ENST00000576921	PPP1R15A	O75807	674 aa	Predicted RBP	31.78	■■■□□ 2.68
HCFC1R1-209	ENST00000576921	LRRC7	Q96NW7	1537 aa		31.78	■■■□□ 2.68
HCFC1R1-209	ENST00000576921	CLTCL1	P53675	1640 aa		31.75	■■■□□ 2.67
HCFC1R1-209	ENST00000576921	SLC26A8	Q96RN1	970 aa		31.75	■■■□□ 2.67
HCFC1R1-209	ENST00000576921	TRPM2	O94759	1503 aa		31.75	■■■□□ 2.67
HCFC1R1-209	ENST00000576921	PLEKHG1	Q9ULL1	1385 aa		31.72	■■■□□ 2.67
HCFC1R1-209	ENST00000576921	HDGF	P51858	240 aa	Known RBP	31.72	■■■□□ 2.67
HCFC1R1-209	ENST00000576921	XIRP1	Q702N8	1843 aa	Known RBP	31.72	■■■□□ 2.67
HCFC1R1-209	ENST00000576921	NUTM2D	Q5VT03	806 aa	Predicted RBP	31.71	■■■□□ 2.67
HCFC1R1-209	ENST00000576921	SCAF1	Q9H7N4	1312 aa	Known RBP	31.71	■■■□□ 2.67
HCFC1R1-209	ENST00000576921	KIF1B	O60333	1816 aa		31.7	■■■□□ 2.67
HCFC1R1-209	ENST00000576921	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	31.69	■■■□□ 2.66
HCFC1R1-209	ENST00000576921	SLC4A1AP	Q9BWU0	796 aa	Known RBP	31.68	■■■□□ 2.66
HCFC1R1-209	ENST00000576921	TOM1	O60784	492 aa		31.67	■■■□□ 2.66
HCFC1R1-209	ENST00000576921	NWD1	Q149M9	1564 aa		31.66	■■■□□ 2.66
HCFC1R1-209	ENST00000576921	PIP4K2B	P78356	416 aa		31.66	■■■□□ 2.66
HCFC1R1-209	ENST00000576921	ALK	Q9UM73	1620 aa		31.64	■■■□□ 2.66
HCFC1R1-209	ENST00000576921	CHD2	O14647	1828 aa	Known RBP	31.63	■■■□□ 2.65
HCFC1R1-209	ENST00000576921	ZNF326	Q5BKZ1	582 aa	Known RBP	31.63	■■■□□ 2.65
HCFC1R1-209	ENST00000576921	KCNA6	P17658	529 aa		31.62	■■■□□ 2.65
HCFC1R1-209	ENST00000576921	DIP2A	Q14689	1571 aa		31.61	■■■□□ 2.65
HCFC1R1-209	ENST00000576921	NKTR	P30414	1462 aa	Known RBP	31.6	■■■□□ 2.65
HCFC1R1-209	ENST00000576921	ADAMTS13	Q76LX8	1427 aa		31.57	■■■□□ 2.64
HCFC1R1-209	ENST00000576921	TMEM94	Q12767	1356 aa		31.56	■■■□□ 2.64
HCFC1R1-209	ENST00000576921	NEXMIF	Q5QGS0	1516 aa		31.55	■■■□□ 2.64
HCFC1R1-209	ENST00000576921	SETD5	Q9C0A6	1442 aa		31.55	■■■□□ 2.64
HCFC1R1-209	ENST00000576921	FOXD1	Q16676	465 aa		31.54	■■■□□ 2.64
HCFC1R1-209	ENST00000576921	PROSER2	Q86WR7	435 aa	Predicted RBP	31.54	■■■□□ 2.64
HCFC1R1-209	ENST00000576921	NRXN3	Q9Y4C0	1643 aa		31.53	■■■□□ 2.64
HCFC1R1-209	ENST00000576921	RBM33	Q96EV2	1170 aa	Known RBP	31.52	■■■□□ 2.64
HCFC1R1-209	ENST00000576921	TBX22	Q9Y458	520 aa		31.52	■■■□□ 2.64
HCFC1R1-209	ENST00000576921	SETBP1	Q9Y6X0	1596 aa		31.51	■■■□□ 2.63
HCFC1R1-209	ENST00000576921	MPHOSPH9	Q99550	1183 aa		31.48	■■■□□ 2.63
HCFC1R1-209	ENST00000576921	HSPA1L	P34931	641 aa		31.47	■■■□□ 2.63
HCFC1R1-209	ENST00000576921	RAB3GAP2	Q9H2M9	1393 aa		31.45	■■■□□ 2.63
HCFC1R1-209	ENST00000576921	PPL	O60437	1756 aa		31.45	■■■□□ 2.62
HCFC1R1-209	ENST00000576921	PIK3R4	Q99570	1358 aa		31.44	■■■□□ 2.62
HCFC1R1-209	ENST00000576921	CCDC144A	A2RUR9	1427 aa		31.43	■■■□□ 2.62
HCFC1R1-209	ENST00000576921	ACIN1	Q9UKV3	1341 aa	Known RBP	31.41	■■■□□ 2.62
HCFC1R1-209	ENST00000576921	MSH6	P52701	1360 aa		31.4	■■■□□ 2.62
HCFC1R1-209	ENST00000576921	XRN1	Q8IZH2	1706 aa	Known RBP	31.39	■■■□□ 2.62
HCFC1R1-209	ENST00000576921	PTPRU	Q92729	1446 aa		31.39	■■■□□ 2.62
HCFC1R1-209	ENST00000576921	DISP3	Q9P2K9	1392 aa		31.37	■■■□□ 2.61
HCFC1R1-209	ENST00000576921	AMOTL2	Q9Y2J4	779 aa		31.36	■■■□□ 2.61
HCFC1R1-209	ENST00000576921	C14orf37	Q86TY3	774 aa		31.35	■■■□□ 2.61
HCFC1R1-209	ENST00000576921	ROBO1	Q9Y6N7	1651 aa		31.35	■■■□□ 2.61
HCFC1R1-209	ENST00000576921	SETD1A	O15047	1707 aa	Known RBP	31.34	■■■□□ 2.61
HCFC1R1-209	ENST00000576921	MET	P08581	1390 aa		31.33	■■■□□ 2.61
HCFC1R1-209	ENST00000576921	VGF	O15240	615 aa	Predicted RBP	31.33	■■■□□ 2.61
HCFC1R1-209	ENST00000576921	IFT172	Q9UG01	1749 aa		31.32	■■■□□ 2.61
HCFC1R1-209	ENST00000576921	RPGRIP1L	Q68CZ1	1315 aa		31.32	■■■□□ 2.6
HCFC1R1-209	ENST00000576921	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	31.32	■■■□□ 2.6
HCFC1R1-209	ENST00000576921	SPATA31E1	Q6ZUB1	1445 aa		31.29	■■■□□ 2.6
HCFC1R1-209	ENST00000576921	NCOA3	Q9Y6Q9	1424 aa		31.29	■■■□□ 2.6
HCFC1R1-209	ENST00000576921	RGL3	Q3MIN7	710 aa		31.28	■■■□□ 2.6
HCFC1R1-209	ENST00000576921	FAM135B	Q49AJ0	1406 aa		31.27	■■■□□ 2.6
HCFC1R1-209	ENST00000576921	MED1	Q15648	1581 aa	Predicted RBP	31.24	■■■□□ 2.59
HCFC1R1-209	ENST00000576921	SLAIN2	Q9P270	581 aa		31.21	■■■□□ 2.59
HCFC1R1-209	ENST00000576921	NALCN	Q8IZF0	1738 aa		31.2	■■■□□ 2.58
HCFC1R1-209	ENST00000576921	C19orf44	Q9H6X5	657 aa		31.19	■■■□□ 2.58
HCFC1R1-209	ENST00000576921	ATF3	P18847	181 aa		31.18	■■■□□ 2.58
HCFC1R1-209	ENST00000576921	ADGRF5	Q8IZF2	1346 aa		31.18	■■■□□ 2.58
HCFC1R1-209	ENST00000576921	PHLPP1	O60346	1717 aa		31.18	■■■□□ 2.58
HCFC1R1-209	ENST00000576921	ANKRD30B	Q9BXX2	1392 aa		31.17	■■■□□ 2.58
HCFC1R1-209	ENST00000576921	CADPS2	Q86UW7	1296 aa		31.16	■■■□□ 2.58
HCFC1R1-209	ENST00000576921	DCC	P43146	1447 aa		31.13	■■■□□ 2.57
HCFC1R1-209	ENST00000576921	PTCH1	Q13635	1447 aa		31.13	■■■□□ 2.57
HCFC1R1-209	ENST00000576921	HRC	P23327	699 aa		31.12	■■■□□ 2.57
HCFC1R1-209	ENST00000576921	ADGRL3	Q9HAR2	1447 aa		31.12	■■■□□ 2.57
HCFC1R1-209	ENST00000576921	PIK3C2G	O75747	1445 aa		31.09	■■■□□ 2.57
HCFC1R1-209	ENST00000576921	ROBO2	Q9HCK4	1378 aa		31.09	■■■□□ 2.57
HCFC1R1-209	ENST00000576921	ASXL1	Q8IXJ9	1541 aa		31.06	■■■□□ 2.56
HCFC1R1-209	ENST00000576921	PRAG1	Q86YV5	1406 aa		31.06	■■■□□ 2.56
HCFC1R1-209	ENST00000576921	ILDR2	Q71H61	639 aa		31.05	■■■□□ 2.56
HCFC1R1-209	ENST00000576921	MYOM2	P54296	1465 aa		31.05	■■■□□ 2.56
HCFC1R1-209	ENST00000576921	COL16A1	Q07092	1604 aa	Predicted RBP	31.05	■■■□□ 2.56
HCFC1R1-209	ENST00000576921	LAMC1	P11047	1609 aa		31.04	■■■□□ 2.56
HCFC1R1-209	ENST00000576921	MST1R	Q04912	1400 aa		31.04	■■■□□ 2.56
HCFC1R1-209	ENST00000576921	KNDC1	Q76NI1	1749 aa		31.03	■■■□□ 2.56
HCFC1R1-209	ENST00000576921	AHDC1	Q5TGY3	1603 aa	Predicted RBP	31.02	■■■□□ 2.56
HCFC1R1-209	ENST00000576921	PHF23	Q9BUL5	403 aa	Predicted RBP	31	■■■□□ 2.55
HCFC1R1-209	ENST00000576921	STK26	Q9P289	416 aa		31	■■■□□ 2.55
HCFC1R1-209	ENST00000576921	NRXN1	Q9ULB1	1477 aa		31	■■■□□ 2.55
HCFC1R1-209	ENST00000576921	TMEM132E	Q6IEE7	984 aa		30.98	■■■□□ 2.55
HCFC1R1-209	ENST00000576921	BRINP3	Q76B58	766 aa		30.98	■■■□□ 2.55
HCFC1R1-209	ENST00000576921	LRPPRC	P42704	1394 aa	Known RBP	30.96	■■■□□ 2.55
HCFC1R1-209	ENST00000576921	NHSL1	Q5SYE7	1610 aa		30.95	■■■□□ 2.55
HCFC1R1-209	ENST00000576921	TECPR2	O15040	1411 aa		30.94	■■■□□ 2.54
HCFC1R1-209	ENST00000576921	YTHDC2	Q9H6S0	1430 aa	Known RBP	30.93	■■■□□ 2.54
HCFC1R1-209	ENST00000576921	JCAD	Q9P266	1359 aa		30.92	■■■□□ 2.54
HCFC1R1-209	ENST00000576921	CFAP70	Q5T0N1	1121 aa		30.91	■■■□□ 2.54
HCFC1R1-209	ENST00000576921	C14orf93	Q9H972	538 aa	Known RBP	30.91	■■■□□ 2.54
HCFC1R1-209	ENST00000576921	CDC42BPG	Q6DT37	1551 aa		30.91	■■■□□ 2.54
HCFC1R1-209	ENST00000576921	ABCC11	Q96J66	1382 aa		30.9	■■■□□ 2.54
HCFC1R1-209	ENST00000576921	C1orf167	Q5SNV9	1468 aa		30.89	■■■□□ 2.54
HCFC1R1-209	ENST00000576921	SHPRH	Q149N8	1683 aa		30.89	■■■□□ 2.54
HCFC1R1-209	ENST00000576921	DCAF11	Q8TEB1	546 aa		30.88	■■■□□ 2.53
HCFC1R1-209	ENST00000576921	KDM2A	Q9Y2K7	1162 aa		30.88	■■■□□ 2.53
HCFC1R1-209	ENST00000576921	WAPL	Q7Z5K2	1190 aa		30.87	■■■□□ 2.53
HCFC1R1-209	ENST00000576921	PLEKHH1	Q9ULM0	1364 aa		30.86	■■■□□ 2.53

Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms