RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 KDM2BQ8NHM5 1336 aa22.27■■□□□ 1.16
VPS53-215ENST00000573028 IL27Q8NEV9 243 aa22.27■■□□□ 1.16
VPS53-215ENST00000573028 SLFN5Q08AF3 891 aa22.27■■□□□ 1.15
VPS53-215ENST00000573028 CFAP70Q5T0N1 1121 aa22.26■■□□□ 1.15
VPS53-215ENST00000573028 ERCC6L2Q5T890 1561 aa22.26■■□□□ 1.15
VPS53-215ENST00000573028 TNNT2P45379 298 aaPredicted RBP22.26■■□□□ 1.15
VPS53-215ENST00000573028 MAST1Q9Y2H9 1570 aa22.26■■□□□ 1.15
VPS53-215ENST00000573028 NEUROD2Q15784 382 aa22.25■■□□□ 1.15
VPS53-215ENST00000573028 INSRP06213 1382 aa22.25■■□□□ 1.15
VPS53-215ENST00000573028 KIF3BO15066 747 aa22.24■■□□□ 1.15
VPS53-215ENST00000573028 LAMC1P11047 1609 aa22.24■■□□□ 1.15
VPS53-215ENST00000573028 FAM161AQ3B820 660 aa22.23■■□□□ 1.15
VPS53-215ENST00000573028 CANXP27824 592 aaKnown RBP22.23■■□□□ 1.15
VPS53-215ENST00000573028 ZNF521Q96K83 1311 aa22.22■■□□□ 1.15
VPS53-215ENST00000573028 CHGAP10645 457 aaKnown RBP22.22■■□□□ 1.15
VPS53-215ENST00000573028 PLXNC1O60486 1568 aa22.22■■□□□ 1.15
VPS53-215ENST00000573028 ATP10AO60312 1499 aa22.22■■□□□ 1.15
VPS53-215ENST00000573028 USP35Q9P2H5 1018 aa22.22■■□□□ 1.15
VPS53-215ENST00000573028 DMRT2Q9Y5R5 561 aa22.22■■□□□ 1.15
VPS53-215ENST00000573028 PLCH2O75038 1416 aa22.21■■□□□ 1.15
VPS53-215ENST00000573028 SCAF11Q99590 1463 aaKnown RBP22.21■■□□□ 1.15
VPS53-215ENST00000573028 C8orf34Q49A92 452 aa22.19■■□□□ 1.14
VPS53-215ENST00000573028 ASXL1Q8IXJ9 1541 aa22.19■■□□□ 1.14
VPS53-215ENST00000573028 NFKBIBQ15653 356 aa22.18■■□□□ 1.14
VPS53-215ENST00000573028 ABCC2Q92887 1545 aa22.18■■□□□ 1.14
VPS53-215ENST00000573028 FRAT1Q92837 279 aaPredicted RBP22.17■■□□□ 1.14
VPS53-215ENST00000573028 RRP7AQ9Y3A4 280 aaKnown RBP22.17■■□□□ 1.14
VPS53-215ENST00000573028 EIF3AQ14152 1382 aaKnown RBP22.16■■□□□ 1.14
VPS53-215ENST00000573028 ADGRF5Q8IZF2 1346 aa22.16■■□□□ 1.14
VPS53-215ENST00000573028 CARD14Q9BXL6 1004 aa22.16■■□□□ 1.14
VPS53-215ENST00000573028 CHD1O14646 1710 aa22.16■■□□□ 1.14
VPS53-215ENST00000573028 MADDQ8WXG6 1647 aa22.15■■□□□ 1.14
VPS53-215ENST00000573028 RNF17Q9BXT8 1623 aaKnown RBP22.14■■□□□ 1.14
VPS53-215ENST00000573028 PANK1Q8TE04 598 aa22.14■■□□□ 1.14
VPS53-215ENST00000573028 COG6Q9Y2V7 657 aa22.14■■□□□ 1.14
VPS53-215ENST00000573028 E9PSI1 815 aa22.14■■□□□ 1.13
VPS53-215ENST00000573028 KANK1Q14678 1352 aa22.13■■□□□ 1.13
VPS53-215ENST00000573028 PIK3C2GO75747 1445 aa22.13■■□□□ 1.13
VPS53-215ENST00000573028 IGHDP01880 384 aa22.13■■□□□ 1.13
VPS53-215ENST00000573028 SENP3Q9H4L4 574 aaPredicted RBP22.11■■□□□ 1.13
VPS53-215ENST00000573028 NKTRP30414 1462 aaKnown RBP22.11■■□□□ 1.13
VPS53-215ENST00000573028 TRAK1Q9UPV9 953 aa22.1■■□□□ 1.13
VPS53-215ENST00000573028 TRMT2AQ8IZ69 625 aaKnown RBP22.1■■□□□ 1.13
VPS53-215ENST00000573028 CENPJQ9HC77 1338 aaPredicted RBP22.1■■□□□ 1.13
VPS53-215ENST00000573028 SYNMO15061 1565 aa22.09■■□□□ 1.13
VPS53-215ENST00000573028 BCL2L13Q9BXK5 485 aa22.09■■□□□ 1.13
VPS53-215ENST00000573028 ABCC1P33527 1531 aa22.09■■□□□ 1.13
VPS53-215ENST00000573028 IQGAP1P46940 1657 aa22.09■■□□□ 1.13
VPS53-215ENST00000573028 MORC1Q86VD1 984 aa22.08■■□□□ 1.13
VPS53-215ENST00000573028 GSE1Q14687 1217 aa22.08■■□□□ 1.13
VPS53-215ENST00000573028 CLTCL1P53675 1640 aa22.08■■□□□ 1.13
VPS53-215ENST00000573028 SCAPERQ9BY12 1400 aa22.07■■□□□ 1.12
VPS53-215ENST00000573028 TRPM2O94759 1503 aa22.07■■□□□ 1.12
VPS53-215ENST00000573028 STAC3Q96MF2 364 aa22.07■■□□□ 1.12
VPS53-215ENST00000573028 UGGT1Q9NYU2 1555 aa22.07■■□□□ 1.12
VPS53-215ENST00000573028 WWC1Q8IX03 1113 aa22.06■■□□□ 1.12
VPS53-215ENST00000573028 FRAT2O75474 233 aaPredicted RBP22.06■■□□□ 1.12
VPS53-215ENST00000573028 SLC12A5Q9H2X9 1139 aa22.06■■□□□ 1.12
VPS53-215ENST00000573028 BRPF3Q9ULD4 1205 aa22.06■■□□□ 1.12
VPS53-215ENST00000573028 CLUAP1Q96AJ1 413 aa22.04■■□□□ 1.12
VPS53-215ENST00000573028 PTPRTO14522 1441 aa22.04■■□□□ 1.12
VPS53-215ENST00000573028 TMEM132EQ6IEE7 984 aa22.04■■□□□ 1.12
VPS53-215ENST00000573028 NPC1L1Q9UHC9 1359 aa22.03■■□□□ 1.12
VPS53-215ENST00000573028 ZCCHC11Q5TAX3 1644 aaKnown RBP22.02■■□□□ 1.12
VPS53-215ENST00000573028 TNNQ9UQP3 1299 aa22.02■■□□□ 1.12
VPS53-215ENST00000573028 ERVK-7P63135 1459 aa22.02■■□□□ 1.12
VPS53-215ENST00000573028 NUTM2DQ5VT03 806 aaPredicted RBP22.02■■□□□ 1.12
VPS53-215ENST00000573028 CGNL1Q0VF96 1302 aa22.02■■□□□ 1.11
VPS53-215ENST00000573028 SPHKAPQ2M3C7 1700 aa22.02■■□□□ 1.11
VPS53-215ENST00000573028 SEC24BO95487 1268 aa22.01■■□□□ 1.11
VPS53-215ENST00000573028 TCP11L2Q8N4U5 519 aa22■■□□□ 1.11
VPS53-215ENST00000573028 ZFYVE16Q7Z3T8 1539 aa21.99■■□□□ 1.11
VPS53-215ENST00000573028 KDM5AP29375 1690 aaKnown RBP21.99■■□□□ 1.11
VPS53-215ENST00000573028 MYOM1P52179 1685 aa21.99■■□□□ 1.11
VPS53-215ENST00000573028 PDE3AQ14432 1141 aa21.99■■□□□ 1.11
VPS53-215ENST00000573028 SHROOM2Q13796 1616 aa21.98■■□□□ 1.11
VPS53-215ENST00000573028 ANO8Q9HCE9 1232 aaPredicted RBP21.98■■□□□ 1.11
VPS53-215ENST00000573028 NSD3Q9BZ95 1437 aa21.98■■□□□ 1.11
VPS53-215ENST00000573028 SLKQ9H2G2 1235 aaPredicted RBP21.98■■□□□ 1.11
VPS53-215ENST00000573028 RTEL1-TNFRSF6BF6WH68 1400 aa21.97■■□□□ 1.11
VPS53-215ENST00000573028 SLC24A1O60721 1099 aa21.97■■□□□ 1.11
VPS53-215ENST00000573028 GGT6Q6P531 493 aa21.97■■□□□ 1.11
VPS53-215ENST00000573028 CEP152O94986 1710 aa21.97■■□□□ 1.11
VPS53-215ENST00000573028 MTHFSP49914 203 aa21.97■■□□□ 1.11
VPS53-215ENST00000573028 SAFB2Q14151 953 aaKnown RBP eCLIP21.96■■□□□ 1.11
VPS53-215ENST00000573028 CLASP1Q7Z460 1538 aa21.96■■□□□ 1.11
VPS53-215ENST00000573028 FANCAO15360 1455 aa21.95■■□□□ 1.1
VPS53-215ENST00000573028 RUNDC1Q96C34 613 aa21.95■■□□□ 1.1
VPS53-215ENST00000573028 RLBP1P12271 317 aa21.95■■□□□ 1.1
VPS53-215ENST00000573028 NOS1P29475 1434 aa21.94■■□□□ 1.1
VPS53-215ENST00000573028 RARSP54136 660 aaKnown RBP21.94■■□□□ 1.1
VPS53-215ENST00000573028 ATP7AQ04656 1500 aa21.92■■□□□ 1.1
VPS53-215ENST00000573028 U2AF1L5P0DN76 240 aaPredicted RBP21.92■■□□□ 1.1
VPS53-215ENST00000573028 U2AF1Q01081 240 aaKnown RBP eCLIP21.92■■□□□ 1.1
VPS53-215ENST00000573028 PCDHB15Q9Y5E8 787 aa21.92■■□□□ 1.1
VPS53-215ENST00000573028 MAPK8IP3Q9UPT6 1336 aa21.91■■□□□ 1.1
VPS53-215ENST00000573028 POLR3AO14802 1390 aaPredicted RBP21.91■■□□□ 1.1
VPS53-215ENST00000573028 TET3O43151 1660 aa21.91■■□□□ 1.1
VPS53-215ENST00000573028 NGEFQ8N5V2 710 aa21.91■■□□□ 1.1
VPS53-215ENST00000573028 USP19O94966 1318 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms