RNA–Protein interactions for RNA: ENST00000570139.1

CNOT1-222, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 2

Gene CNOT1, Length 458 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-222	ENST00000570139	WWC1	Q8IX03	1113 aa		11.46	□□□□□ -0.57
CNOT1-222	ENST00000570139	COG6	Q9Y2V7	657 aa		11.46	□□□□□ -0.57
CNOT1-222	ENST00000570139	SEC24B	O95487	1268 aa		11.45	□□□□□ -0.58
CNOT1-222	ENST00000570139	LAMC3	Q9Y6N6	1575 aa		11.45	□□□□□ -0.58
CNOT1-222	ENST00000570139	TSR1	Q2NL82	804 aa	Known RBP	11.44	□□□□□ -0.58
CNOT1-222	ENST00000570139	TMEM259	Q4ZIN3	620 aa		11.44	□□□□□ -0.58
CNOT1-222	ENST00000570139	PCDHGA10	Q9Y5H3	936 aa		11.44	□□□□□ -0.58
CNOT1-222	ENST00000570139	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.43	□□□□□ -0.58
CNOT1-222	ENST00000570139	CADPS	Q9ULU8	1353 aa		11.42	□□□□□ -0.58
CNOT1-222	ENST00000570139	RFC5	P40937	340 aa		11.42	□□□□□ -0.58
CNOT1-222	ENST00000570139	C3orf67	Q6ZVT6	689 aa		11.42	□□□□□ -0.58
CNOT1-222	ENST00000570139	PXYLP1	Q8TE99	480 aa		11.42	□□□□□ -0.58
CNOT1-222	ENST00000570139	RBM27	Q9P2N5	1060 aa	Known RBP	11.42	□□□□□ -0.58
CNOT1-222	ENST00000570139	JPH4	Q96JJ6	628 aa		11.41	□□□□□ -0.58
CNOT1-222	ENST00000570139	TBC1D2	Q9BYX2	928 aa		11.41	□□□□□ -0.58
CNOT1-222	ENST00000570139	ADGRG1	Q9Y653	693 aa		11.41	□□□□□ -0.58
CNOT1-222	ENST00000570139	ST18	O60284	1047 aa		11.4	□□□□□ -0.58
CNOT1-222	ENST00000570139	PRM3	Q9NNZ6	103 aa		11.4	□□□□□ -0.58
CNOT1-222	ENST00000570139	PADI6	Q6TGC4	694 aa		11.38	□□□□□ -0.59
CNOT1-222	ENST00000570139	SOCS7	O14512	581 aa		11.37	□□□□□ -0.59
CNOT1-222	ENST00000570139	PPP1R15A	O75807	674 aa	Predicted RBP	11.37	□□□□□ -0.59
CNOT1-222	ENST00000570139	PDE4C	Q08493	712 aa		11.37	□□□□□ -0.59
CNOT1-222	ENST00000570139	FAM161A	Q3B820	660 aa		11.37	□□□□□ -0.59
CNOT1-222	ENST00000570139	PPP2R2D	Q66LE6	453 aa		11.37	□□□□□ -0.59
CNOT1-222	ENST00000570139	SNRK	Q9NRH2	765 aa		11.37	□□□□□ -0.59
CNOT1-222	ENST00000570139	RBM46	Q8TBY0	533 aa	Known RBP	11.36	□□□□□ -0.59
CNOT1-222	ENST00000570139	WRN	Q14191	1432 aa	Predicted RBP eCLIP	11.35	□□□□□ -0.59
CNOT1-222	ENST00000570139	BIVM-ERCC5	R4GMW8	1640 aa		11.35	□□□□□ -0.59
CNOT1-222	ENST00000570139	TUSC1	Q2TAM9	212 aa		11.35	□□□□□ -0.59
CNOT1-222	ENST00000570139	AEBP1	Q8IUX7	1158 aa		11.35	□□□□□ -0.59
CNOT1-222	ENST00000570139	NLRP7	Q8WX94	980 aa		11.35	□□□□□ -0.59
CNOT1-222	ENST00000570139	ABCC8	Q09428	1581 aa		11.35	□□□□□ -0.59
CNOT1-222	ENST00000570139	RETREG2	Q8NC44	543 aa		11.34	□□□□□ -0.59
CNOT1-222	ENST00000570139	TOP2B	Q02880	1626 aa		11.34	□□□□□ -0.59
CNOT1-222	ENST00000570139	TTC13	Q8NBP0	860 aa		11.33	□□□□□ -0.6
CNOT1-222	ENST00000570139	COLQ	Q9Y215	455 aa	Predicted RBP	11.33	□□□□□ -0.6
CNOT1-222	ENST00000570139	PCDHGA4	Q9Y5G9	962 aa		11.33	□□□□□ -0.6
CNOT1-222	ENST00000570139	C6orf132	Q5T0Z8	1188 aa		11.32	□□□□□ -0.6
CNOT1-222	ENST00000570139	RIC3	Q7Z5B4	369 aa		11.32	□□□□□ -0.6
CNOT1-222	ENST00000570139	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	11.31	□□□□□ -0.6
CNOT1-222	ENST00000570139	CALR3	Q96L12	384 aa	Known RBP	11.31	□□□□□ -0.6
CNOT1-222	ENST00000570139	LIMD1	Q9UGP4	676 aa		11.31	□□□□□ -0.6
CNOT1-222	ENST00000570139	PDS5B	Q9NTI5	1447 aa		11.31	□□□□□ -0.6
CNOT1-222	ENST00000570139	SYNJ1	O43426	1573 aa		11.3	□□□□□ -0.6
CNOT1-222	ENST00000570139	FOSB	P53539	338 aa		11.3	□□□□□ -0.6
CNOT1-222	ENST00000570139	MTMR14	Q8NCE2	650 aa		11.3	□□□□□ -0.6
CNOT1-222	ENST00000570139	GDPD2	Q9HCC8	539 aa		11.3	□□□□□ -0.6
CNOT1-222	ENST00000570139	FANCD2	Q9BXW9	1451 aa		11.3	□□□□□ -0.6
CNOT1-222	ENST00000570139	ACIN1	Q9UKV3	1341 aa	Known RBP	11.3	□□□□□ -0.6
CNOT1-222	ENST00000570139	SULF1	Q8IWU6	871 aa		11.29	□□□□□ -0.6
CNOT1-222	ENST00000570139	ZDHHC16	Q969W1	377 aa		11.29	□□□□□ -0.6
CNOT1-222	ENST00000570139	PATL2	C9JE40	543 aa	Known RBP	11.28	□□□□□ -0.6
CNOT1-222	ENST00000570139	SPIRE2	Q8WWL2	714 aa		11.28	□□□□□ -0.6
CNOT1-222	ENST00000570139	CEP164	Q9UPV0	1460 aa		11.27	□□□□□ -0.6
CNOT1-222	ENST00000570139	SPTLC1	O15269	473 aa		11.27	□□□□□ -0.61
CNOT1-222	ENST00000570139	GJA5	P36382	358 aa		11.27	□□□□□ -0.61
CNOT1-222	ENST00000570139	PRSS12	P56730	875 aa		11.27	□□□□□ -0.61
CNOT1-222	ENST00000570139	NUTM1	Q86Y26	1132 aa		11.27	□□□□□ -0.61
CNOT1-222	ENST00000570139	EEA1	Q15075	1411 aa		11.26	□□□□□ -0.61
CNOT1-222	ENST00000570139	ABL2	P42684	1182 aa		11.26	□□□□□ -0.61
CNOT1-222	ENST00000570139	TMCO4	Q5TGY1	634 aa		11.26	□□□□□ -0.61
CNOT1-222	ENST00000570139	DNMBP	Q6XZF7	1577 aa		11.25	□□□□□ -0.61
CNOT1-222	ENST00000570139	NES	P48681	1621 aa		11.25	□□□□□ -0.61
CNOT1-222	ENST00000570139	CD46	P15529	392 aa		11.25	□□□□□ -0.61
CNOT1-222	ENST00000570139	RSBN1L	Q6PCB5	846 aa	Predicted RBP	11.25	□□□□□ -0.61
CNOT1-222	ENST00000570139	GLMN	Q92990	594 aa		11.25	□□□□□ -0.61
CNOT1-222	ENST00000570139	CUX1	P39880	1505 aa		11.25	□□□□□ -0.61
CNOT1-222	ENST00000570139	KDM4F	A0A1W2PPD8	638 aa		11.24	□□□□□ -0.61
CNOT1-222	ENST00000570139	ZNF454	Q8N9F8	522 aa		11.24	□□□□□ -0.61
CNOT1-222	ENST00000570139	CDCA7L	Q96GN5	454 aa		11.24	□□□□□ -0.61
CNOT1-222	ENST00000570139	KIF21A	Q7Z4S6	1674 aa		11.23	□□□□□ -0.61
CNOT1-222	ENST00000570139	RCCD1	A6NED2	376 aa		11.22	□□□□□ -0.61
CNOT1-222	ENST00000570139	FBXO31	Q5XUX0	539 aa	Predicted RBP	11.22	□□□□□ -0.61
CNOT1-222	ENST00000570139	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	11.22	□□□□□ -0.61
CNOT1-222	ENST00000570139	LILRB3	O75022	631 aa		11.2	□□□□□ -0.62
CNOT1-222	ENST00000570139	AP1G2	O75843	785 aa		11.2	□□□□□ -0.62
CNOT1-222	ENST00000570139	IRF5	Q13568	498 aa		11.2	□□□□□ -0.62
CNOT1-222	ENST00000570139	TBC1D2B	Q9UPU7	963 aa		11.2	□□□□□ -0.62
CNOT1-222	ENST00000570139	CSPP1	Q1MSJ5	1256 aa		11.19	□□□□□ -0.62
CNOT1-222	ENST00000570139	GZF1	Q9H116	711 aa	Predicted RBP	11.19	□□□□□ -0.62
CNOT1-222	ENST00000570139	USP17L8	P0C7I0	530 aa		11.18	□□□□□ -0.62
CNOT1-222	ENST00000570139	PRPF38B	Q5VTL8	546 aa	Known RBP	11.18	□□□□□ -0.62
CNOT1-222	ENST00000570139	ZNF710	Q8N1W2	664 aa		11.18	□□□□□ -0.62
CNOT1-222	ENST00000570139	PBXIP1	Q96AQ6	731 aa		11.18	□□□□□ -0.62
CNOT1-222	ENST00000570139	ADAM33	Q9BZ11	813 aa		11.18	□□□□□ -0.62
CNOT1-222	ENST00000570139	NDUFB9	Q9Y6M9	179 aa		11.18	□□□□□ -0.62
CNOT1-222	ENST00000570139	MOXD2P	A6NHM9	499 aa		11.17	□□□□□ -0.62
CNOT1-222	ENST00000570139	NUTM2B	A6NNL0	878 aa	Predicted RBP	11.17	□□□□□ -0.62
CNOT1-222	ENST00000570139	DDX11L8	A8MPP1	907 aa		11.17	□□□□□ -0.62
CNOT1-222	ENST00000570139	NUTM2E	B1AL46	878 aa	Predicted RBP	11.17	□□□□□ -0.62
CNOT1-222	ENST00000570139	DNAJB2	P25686	324 aa		11.17	□□□□□ -0.62
CNOT1-222	ENST00000570139	NUTM2D	Q5VT03	806 aa	Predicted RBP	11.17	□□□□□ -0.62
CNOT1-222	ENST00000570139	NUTM2A	Q8IVF1	878 aa	Predicted RBP	11.17	□□□□□ -0.62
CNOT1-222	ENST00000570139	EYA1	Q99502	592 aa		11.17	□□□□□ -0.62
CNOT1-222	ENST00000570139	TOPBP1	Q92547	1522 aa		11.17	□□□□□ -0.62
CNOT1-222	ENST00000570139	POM121C	A8CG34	1229 aa		11.16	□□□□□ -0.62
CNOT1-222	ENST00000570139	QPCT	Q16769	361 aa		11.16	□□□□□ -0.62
CNOT1-222	ENST00000570139	WASHC4	Q2M389	1173 aa		11.16	□□□□□ -0.62
CNOT1-222	ENST00000570139	UST	Q9Y2C2	406 aa		11.16	□□□□□ -0.62
CNOT1-222	ENST00000570139	MRC2	Q9UBG0	1479 aa		11.16	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms