RNA–Protein interactions for RNA: ENST00000569062.1

ABCA3-206, Transcript of ATP binding cassette subfamily A member 3, humanhuman

TSL 5

Gene ABCA3, Length 900 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3-206ENST00000569062 SENP3Q9H4L4 574 aaPredicted RBP30.33■■■□□ 2.45
ABCA3-206ENST00000569062 BCANQ96GW7 911 aa30.29■■■□□ 2.44
ABCA3-206ENST00000569062 XIRP1Q702N8 1843 aaKnown RBP30.29■■■□□ 2.44
ABCA3-206ENST00000569062 PLEKHG1Q9ULL1 1385 aa30.28■■■□□ 2.44
ABCA3-206ENST00000569062 PPP1R15AO75807 674 aaPredicted RBP30.28■■■□□ 2.44
ABCA3-206ENST00000569062 HDGFP51858 240 aaKnown RBP30.28■■■□□ 2.44
ABCA3-206ENST00000569062 NUTM2DQ5VT03 806 aaPredicted RBP30.28■■■□□ 2.44
ABCA3-206ENST00000569062 CLTCL1P53675 1640 aa30.27■■■□□ 2.44
ABCA3-206ENST00000569062 TRPM2O94759 1503 aa30.26■■■□□ 2.43
ABCA3-206ENST00000569062 ALKQ9UM73 1620 aa30.25■■■□□ 2.43
ABCA3-206ENST00000569062 TOM1O60784 492 aa30.25■■■□□ 2.43
ABCA3-206ENST00000569062 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.24■■■□□ 2.43
ABCA3-206ENST00000569062 PIP4K2BP78356 416 aa30.23■■■□□ 2.43
ABCA3-206ENST00000569062 KCNA6P17658 529 aa30.22■■■□□ 2.43
ABCA3-206ENST00000569062 SLC4A1APQ9BWU0 796 aaKnown RBP30.22■■■□□ 2.43
ABCA3-206ENST00000569062 SCAF1Q9H7N4 1312 aaKnown RBP30.22■■■□□ 2.43
ABCA3-206ENST00000569062 NWD1Q149M9 1564 aa30.2■■■□□ 2.43
ABCA3-206ENST00000569062 CHD2O14647 1828 aaKnown RBP30.19■■■□□ 2.42
ABCA3-206ENST00000569062 KIF1BO60333 1816 aa30.19■■■□□ 2.42
ABCA3-206ENST00000569062 ADAMTS13Q76LX8 1427 aa30.16■■■□□ 2.42
ABCA3-206ENST00000569062 ZNF326Q5BKZ1 582 aaKnown RBP30.15■■■□□ 2.42
ABCA3-206ENST00000569062 TBX22Q9Y458 520 aa30.14■■■□□ 2.42
ABCA3-206ENST00000569062 TMEM94Q12767 1356 aa30.14■■■□□ 2.41
ABCA3-206ENST00000569062 RBM33Q96EV2 1170 aaKnown RBP30.13■■■□□ 2.41
ABCA3-206ENST00000569062 NKTRP30414 1462 aaKnown RBP30.12■■■□□ 2.41
ABCA3-206ENST00000569062 DIP2AQ14689 1571 aa30.12■■■□□ 2.41
ABCA3-206ENST00000569062 FOXD1Q16676 465 aa30.12■■■□□ 2.41
ABCA3-206ENST00000569062 PROSER2Q86WR7 435 aaPredicted RBP30.12■■■□□ 2.41
ABCA3-206ENST00000569062 SETD5Q9C0A6 1442 aa30.1■■■□□ 2.41
ABCA3-206ENST00000569062 NEXMIFQ5QGS0 1516 aa30.1■■■□□ 2.41
ABCA3-206ENST00000569062 NRXN3Q9Y4C0 1643 aa30.1■■■□□ 2.41
ABCA3-206ENST00000569062 HSPA1LP34931 641 aa30.08■■■□□ 2.41
ABCA3-206ENST00000569062 MPHOSPH9Q99550 1183 aa30.07■■■□□ 2.4
ABCA3-206ENST00000569062 SETBP1Q9Y6X0 1596 aa30.06■■■□□ 2.4
ABCA3-206ENST00000569062 PIK3R4Q99570 1358 aa30.02■■■□□ 2.4
ABCA3-206ENST00000569062 PTPRUQ92729 1446 aa30■■■□□ 2.39
ABCA3-206ENST00000569062 RAB3GAP2Q9H2M9 1393 aa30■■■□□ 2.39
ABCA3-206ENST00000569062 PPLO60437 1756 aa29.97■■■□□ 2.39
ABCA3-206ENST00000569062 AMOTL2Q9Y2J4 779 aa29.96■■■□□ 2.39
ABCA3-206ENST00000569062 CCDC144AA2RUR9 1427 aa29.96■■■□□ 2.39
ABCA3-206ENST00000569062 MSH6P52701 1360 aa29.95■■■□□ 2.39
ABCA3-206ENST00000569062 DISP3Q9P2K9 1392 aa29.95■■■□□ 2.39
ABCA3-206ENST00000569062 ACIN1Q9UKV3 1341 aaKnown RBP29.95■■■□□ 2.38
ABCA3-206ENST00000569062 XRN1Q8IZH2 1706 aaKnown RBP29.94■■■□□ 2.38
ABCA3-206ENST00000569062 METP08581 1390 aa29.93■■■□□ 2.38
ABCA3-206ENST00000569062 RPGRIP1LQ68CZ1 1315 aa29.92■■■□□ 2.38
ABCA3-206ENST00000569062 VGFO15240 615 aaPredicted RBP29.91■■■□□ 2.38
ABCA3-206ENST00000569062 NCOA3Q9Y6Q9 1424 aa29.9■■■□□ 2.38
ABCA3-206ENST00000569062 ROBO1Q9Y6N7 1651 aa29.9■■■□□ 2.38
ABCA3-206ENST00000569062 SETD1AO15047 1707 aaKnown RBP29.9■■■□□ 2.38
ABCA3-206ENST00000569062 FAM135BQ49AJ0 1406 aa29.89■■■□□ 2.38
ABCA3-206ENST00000569062 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.88■■■□□ 2.37
ABCA3-206ENST00000569062 SPATA31E1Q6ZUB1 1445 aa29.88■■■□□ 2.37
ABCA3-206ENST00000569062 C14orf37Q86TY3 774 aa29.87■■■□□ 2.37
ABCA3-206ENST00000569062 IFT172Q9UG01 1749 aa29.86■■■□□ 2.37
ABCA3-206ENST00000569062 RGL3Q3MIN7 710 aa29.86■■■□□ 2.37
ABCA3-206ENST00000569062 SLAIN2Q9P270 581 aa29.83■■■□□ 2.37
ABCA3-206ENST00000569062 C19orf44Q9H6X5 657 aa29.81■■■□□ 2.36
ABCA3-206ENST00000569062 MED1Q15648 1581 aaPredicted RBP29.8■■■□□ 2.36
ABCA3-206ENST00000569062 ADGRF5Q8IZF2 1346 aa29.78■■■□□ 2.36
ABCA3-206ENST00000569062 ATF3P18847 181 aa29.75■■■□□ 2.35
ABCA3-206ENST00000569062 HRCP23327 699 aa29.75■■■□□ 2.35
ABCA3-206ENST00000569062 CADPS2Q86UW7 1296 aa29.75■■■□□ 2.35
ABCA3-206ENST00000569062 ILDR2Q71H61 639 aa29.74■■■□□ 2.35
ABCA3-206ENST00000569062 ANKRD30BQ9BXX2 1392 aa29.74■■■□□ 2.35
ABCA3-206ENST00000569062 NALCNQ8IZF0 1738 aa29.74■■■□□ 2.35
ABCA3-206ENST00000569062 PHLPP1O60346 1717 aa29.72■■■□□ 2.35
ABCA3-206ENST00000569062 DCCP43146 1447 aa29.7■■■□□ 2.34
ABCA3-206ENST00000569062 PTCH1Q13635 1447 aa29.7■■■□□ 2.34
ABCA3-206ENST00000569062 ROBO2Q9HCK4 1378 aa29.69■■■□□ 2.34
ABCA3-206ENST00000569062 ADGRL3Q9HAR2 1447 aa29.68■■■□□ 2.34
ABCA3-206ENST00000569062 PIK3C2GO75747 1445 aa29.67■■■□□ 2.34
ABCA3-206ENST00000569062 PRAG1Q86YV5 1406 aa29.66■■■□□ 2.34
ABCA3-206ENST00000569062 ASXL1Q8IXJ9 1541 aa29.64■■■□□ 2.34
ABCA3-206ENST00000569062 MST1RQ04912 1400 aa29.63■■■□□ 2.33
ABCA3-206ENST00000569062 COL16A1Q07092 1604 aaPredicted RBP29.63■■■□□ 2.33
ABCA3-206ENST00000569062 MYOM2P54296 1465 aa29.61■■■□□ 2.33
ABCA3-206ENST00000569062 TMEM132EQ6IEE7 984 aa29.6■■■□□ 2.33
ABCA3-206ENST00000569062 BRINP3Q76B58 766 aa29.6■■■□□ 2.33
ABCA3-206ENST00000569062 NRXN1Q9ULB1 1477 aa29.6■■■□□ 2.33
ABCA3-206ENST00000569062 AHDC1Q5TGY3 1603 aaPredicted RBP29.6■■■□□ 2.33
ABCA3-206ENST00000569062 STK26Q9P289 416 aa29.57■■■□□ 2.32
ABCA3-206ENST00000569062 KNDC1Q76NI1 1749 aa29.57■■■□□ 2.32
ABCA3-206ENST00000569062 LRPPRCP42704 1394 aaKnown RBP29.55■■■□□ 2.32
ABCA3-206ENST00000569062 PHF23Q9BUL5 403 aaPredicted RBP29.55■■■□□ 2.32
ABCA3-206ENST00000569062 TECPR2O15040 1411 aa29.54■■■□□ 2.32
ABCA3-206ENST00000569062 LAMC1P11047 1609 aa29.54■■■□□ 2.32
ABCA3-206ENST00000569062 C14orf93Q9H972 538 aaKnown RBP29.54■■■□□ 2.32
ABCA3-206ENST00000569062 CFAP70Q5T0N1 1121 aa29.53■■■□□ 2.32
ABCA3-206ENST00000569062 NHSL1Q5SYE7 1610 aa29.53■■■□□ 2.32
ABCA3-206ENST00000569062 JCADQ9P266 1359 aa29.52■■■□□ 2.32
ABCA3-206ENST00000569062 YTHDC2Q9H6S0 1430 aaKnown RBP29.52■■■□□ 2.32
ABCA3-206ENST00000569062 ABCC11Q96J66 1382 aa29.52■■■□□ 2.32
ABCA3-206ENST00000569062 WAPLQ7Z5K2 1190 aa29.51■■■□□ 2.31
ABCA3-206ENST00000569062 C1orf167Q5SNV9 1468 aa29.5■■■□□ 2.31
ABCA3-206ENST00000569062 PLEKHH1Q9ULM0 1364 aa29.48■■■□□ 2.31
ABCA3-206ENST00000569062 DCAF11Q8TEB1 546 aa29.47■■■□□ 2.31
ABCA3-206ENST00000569062 KDM2AQ9Y2K7 1162 aa29.47■■■□□ 2.31
ABCA3-206ENST00000569062 DDX17Q92841 729 aaKnown RBP29.46■■■□□ 2.31
ABCA3-206ENST00000569062 CDC42BPGQ6DT37 1551 aa29.46■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 225 ms