RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 RICTORQ6R327 1708 aa27.54■■■□□ 2
CLN3-230ENST00000568076 ADGRB3O60242 1522 aa27.53■■■□□ 2
CLN3-230ENST00000568076 LRPPRCP42704 1394 aaKnown RBP27.52■■■□□ 2
CLN3-230ENST00000568076 CFAP70Q5T0N1 1121 aa27.51■■□□□ 1.99
CLN3-230ENST00000568076 WASHC2CQ9Y4E1 1318 aa27.51■■□□□ 1.99
CLN3-230ENST00000568076 NRXN1Q9ULB1 1477 aa27.51■■□□□ 1.99
CLN3-230ENST00000568076 GLI2P10070 1586 aa27.5■■□□□ 1.99
CLN3-230ENST00000568076 RIMBP3CA6NJZ7 1639 aa27.5■■□□□ 1.99
CLN3-230ENST00000568076 RIMBP3BA6NNM3 1639 aa27.5■■□□□ 1.99
CLN3-230ENST00000568076 RIMBP3Q9UFD9 1639 aa27.5■■□□□ 1.99
CLN3-230ENST00000568076 NLRP13Q86W25 1043 aa27.48■■□□□ 1.99
CLN3-230ENST00000568076 CFAP65Q6ZU64 1925 aaKnown RBP27.46■■□□□ 1.99
CLN3-230ENST00000568076 EIF3AQ14152 1382 aaKnown RBP27.46■■□□□ 1.99
CLN3-230ENST00000568076 CAMSAP1Q5T5Y3 1602 aa27.46■■□□□ 1.99
CLN3-230ENST00000568076 CC2D1BQ5T0F9 858 aaKnown RBP27.46■■□□□ 1.99
CLN3-230ENST00000568076 NOS1P29475 1434 aa27.45■■□□□ 1.99
CLN3-230ENST00000568076 IRX6P78412 446 aaPredicted RBP27.45■■□□□ 1.98
CLN3-230ENST00000568076 YEATS2Q9ULM3 1422 aa27.45■■□□□ 1.98
CLN3-230ENST00000568076 SIGLEC1Q9BZZ2 1709 aa27.43■■□□□ 1.98
CLN3-230ENST00000568076 CHGAP10645 457 aaKnown RBP27.42■■□□□ 1.98
CLN3-230ENST00000568076 SMG6Q86US8 1419 aaKnown RBP27.42■■□□□ 1.98
CLN3-230ENST00000568076 SYNMO15061 1565 aa27.41■■□□□ 1.98
CLN3-230ENST00000568076 CDCA8Q53HL2 280 aa27.4■■□□□ 1.98
CLN3-230ENST00000568076 SENP3-EIF4A1A0A087X0R7 540 aa27.4■■□□□ 1.98
CLN3-230ENST00000568076 PPLO60437 1756 aa27.4■■□□□ 1.98
CLN3-230ENST00000568076 MYOM1P52179 1685 aa27.38■■□□□ 1.97
CLN3-230ENST00000568076 DIP2BQ9P265 1576 aa27.37■■□□□ 1.97
CLN3-230ENST00000568076 PIK3C2GO75747 1445 aa27.37■■□□□ 1.97
CLN3-230ENST00000568076 FAM69CQ0P6D2 419 aa27.37■■□□□ 1.97
CLN3-230ENST00000568076 TSHZ2Q9NRE2 1034 aa27.37■■□□□ 1.97
CLN3-230ENST00000568076 PIK3C2BO00750 1634 aa27.36■■□□□ 1.97
CLN3-230ENST00000568076 ERVK-7P63135 1459 aa27.35■■□□□ 1.97
CLN3-230ENST00000568076 SETBP1Q9Y6X0 1596 aa27.35■■□□□ 1.97
CLN3-230ENST00000568076 NUDCQ9Y266 331 aa27.35■■□□□ 1.97
CLN3-230ENST00000568076 ARHGAP31Q2M1Z3 1444 aa27.34■■□□□ 1.97
CLN3-230ENST00000568076 MYO3AQ8NEV4 1616 aa27.33■■□□□ 1.97
CLN3-230ENST00000568076 KDM5AP29375 1690 aaKnown RBP27.33■■□□□ 1.97
CLN3-230ENST00000568076 ZC3H13Q5T200 1668 aaKnown RBP27.33■■□□□ 1.97
CLN3-230ENST00000568076 RPGRIP1LQ68CZ1 1315 aa27.32■■□□□ 1.96
CLN3-230ENST00000568076 AMER1Q5JTC6 1135 aaPredicted RBP27.32■■□□□ 1.96
CLN3-230ENST00000568076 ZMYM4Q5VZL5 1548 aa27.32■■□□□ 1.96
CLN3-230ENST00000568076 KNSTRNQ9Y448 316 aa27.31■■□□□ 1.96
CLN3-230ENST00000568076 ERICH6BQ5W0A0 696 aa27.31■■□□□ 1.96
CLN3-230ENST00000568076 C14orf93Q9H972 538 aaKnown RBP27.31■■□□□ 1.96
CLN3-230ENST00000568076 ADGRB1O14514 1584 aa27.3■■□□□ 1.96
CLN3-230ENST00000568076 SBNO2Q9Y2G9 1366 aa27.27■■□□□ 1.96
CLN3-230ENST00000568076 SLC24A1O60721 1099 aa27.27■■□□□ 1.96
CLN3-230ENST00000568076 ASXL1Q8IXJ9 1541 aa27.26■■□□□ 1.95
CLN3-230ENST00000568076 NEXMIFQ5QGS0 1516 aa27.26■■□□□ 1.95
CLN3-230ENST00000568076 TSPOAP1O95153 1857 aa27.23■■□□□ 1.95
CLN3-230ENST00000568076 CENPJQ9HC77 1338 aaPredicted RBP27.23■■□□□ 1.95
CLN3-230ENST00000568076 IDI1Q13907 227 aa27.23■■□□□ 1.95
CLN3-230ENST00000568076 TRAK1Q9UPV9 953 aa27.23■■□□□ 1.95
CLN3-230ENST00000568076 INSRP06213 1382 aa27.23■■□□□ 1.95
CLN3-230ENST00000568076 BLMP54132 1417 aaPredicted RBP27.22■■□□□ 1.95
CLN3-230ENST00000568076 RNF123Q5XPI4 1314 aa27.22■■□□□ 1.95
CLN3-230ENST00000568076 PPP2R1AP30153 589 aa27.22■■□□□ 1.95
CLN3-230ENST00000568076 TMEM132EQ6IEE7 984 aa27.22■■□□□ 1.95
CLN3-230ENST00000568076 NPC1L1Q9UHC9 1359 aa27.21■■□□□ 1.95
CLN3-230ENST00000568076 NUTM2DQ5VT03 806 aaPredicted RBP27.2■■□□□ 1.95
CLN3-230ENST00000568076 PPP4R2Q9NY27 417 aa27.2■■□□□ 1.95
CLN3-230ENST00000568076 PREX1Q8TCU6 1659 aa27.19■■□□□ 1.94
CLN3-230ENST00000568076 SLC52A1Q9NWF4 448 aa27.18■■□□□ 1.94
CLN3-230ENST00000568076 VGFO15240 615 aaPredicted RBP27.17■■□□□ 1.94
CLN3-230ENST00000568076 QRICH2Q9H0J4 1663 aa27.17■■□□□ 1.94
CLN3-230ENST00000568076 SALL2Q9Y467 1007 aaPredicted RBP27.16■■□□□ 1.94
CLN3-230ENST00000568076 CARD14Q9BXL6 1004 aa27.15■■□□□ 1.94
CLN3-230ENST00000568076 REREQ9P2R6 1566 aa27.14■■□□□ 1.94
CLN3-230ENST00000568076 TMEM131LA2VDJ0 1609 aa27.12■■□□□ 1.93
CLN3-230ENST00000568076 ZFYVE9O95405 1425 aa27.12■■□□□ 1.93
CLN3-230ENST00000568076 MYO5BQ9ULV0 1848 aa27.12■■□□□ 1.93
CLN3-230ENST00000568076 ADAMTS8Q9UP79 889 aa27.11■■□□□ 1.93
CLN3-230ENST00000568076 FBXO31Q5XUX0 539 aaPredicted RBP27.11■■□□□ 1.93
CLN3-230ENST00000568076 PDE3BQ13370 1112 aa27.1■■□□□ 1.93
CLN3-230ENST00000568076 AGLP35573 1532 aa27.1■■□□□ 1.93
CLN3-230ENST00000568076 ARHGEF28Q8N1W1 1705 aaKnown RBP27.08■■□□□ 1.93
CLN3-230ENST00000568076 B4GALNT3Q6L9W6 998 aa27.06■■□□□ 1.92
CLN3-230ENST00000568076 CDCA7LQ96GN5 454 aa27.05■■□□□ 1.92
CLN3-230ENST00000568076 SLC12A5Q9H2X9 1139 aa27.03■■□□□ 1.92
CLN3-230ENST00000568076 WDR43Q15061 677 aaKnown RBP eCLIP27.02■■□□□ 1.92
CLN3-230ENST00000568076 KIF13AQ9H1H9 1805 aa27.02■■□□□ 1.92
CLN3-230ENST00000568076 TULP4Q9NRJ4 1543 aa27.02■■□□□ 1.92
CLN3-230ENST00000568076 PPP6R1Q9UPN7 881 aa27.02■■□□□ 1.92
CLN3-230ENST00000568076 NSD3Q9BZ95 1437 aa27■■□□□ 1.91
CLN3-230ENST00000568076 CLTCQ00610 1675 aaKnown RBP27■■□□□ 1.91
CLN3-230ENST00000568076 SENP3Q9H4L4 574 aaPredicted RBP26.99■■□□□ 1.91
CLN3-230ENST00000568076 RCAN3Q9UKA8 241 aa26.98■■□□□ 1.91
CLN3-230ENST00000568076 PUS7Q96PZ0 661 aaKnown RBP26.97■■□□□ 1.91
CLN3-230ENST00000568076 EVC2Q86UK5 1308 aa26.96■■□□□ 1.91
CLN3-230ENST00000568076 RRP1P56182 461 aaKnown RBP26.96■■□□□ 1.91
CLN3-230ENST00000568076 ARHGEF40Q8TER5 1519 aa26.95■■□□□ 1.91
CLN3-230ENST00000568076 PLEKHH1Q9ULM0 1364 aa26.95■■□□□ 1.9
CLN3-230ENST00000568076 SPATA31D1Q6ZQQ2 1576 aa26.94■■□□□ 1.9
CLN3-230ENST00000568076 STK26Q9P289 416 aa26.93■■□□□ 1.9
CLN3-230ENST00000568076 MLECQ14165 292 aa26.93■■□□□ 1.9
CLN3-230ENST00000568076 RBM19Q9Y4C8 960 aaKnown RBP26.93■■□□□ 1.9
CLN3-230ENST00000568076 PTPRMP28827 1452 aa26.93■■□□□ 1.9
CLN3-230ENST00000568076 SAFB2Q14151 953 aaKnown RBP eCLIP26.92■■□□□ 1.9
CLN3-230ENST00000568076 USP32Q8NFA0 1604 aa26.91■■□□□ 1.9
CLN3-230ENST00000568076 ZNF521Q96K83 1311 aa26.9■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms