RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 CLCN1P35523 988 aa9.62□□□□□ -0.87
LINC00560-201ENST00000564593 MDM2Q00987 491 aaPredicted RBP9.62□□□□□ -0.87
LINC00560-201ENST00000564593 KCNC4Q03721 635 aa9.62□□□□□ -0.87
LINC00560-201ENST00000564593 TTC13Q8NBP0 860 aa9.62□□□□□ -0.87
LINC00560-201ENST00000564593 CDCA7LQ96GN5 454 aa9.62□□□□□ -0.87
LINC00560-201ENST00000564593 REPIN1Q9BWE0 567 aaKnown RBP9.62□□□□□ -0.87
LINC00560-201ENST00000564593 METTL3Q86U44 580 aaKnown RBP9.61□□□□□ -0.87
LINC00560-201ENST00000564593 ADGRG1Q9Y653 693 aa9.61□□□□□ -0.87
LINC00560-201ENST00000564593 PLEKHG3A1L390 1219 aa9.6□□□□□ -0.87
LINC00560-201ENST00000564593 LAPTM4AQ15012 233 aa9.6□□□□□ -0.87
LINC00560-201ENST00000564593 ZFRQ96KR1 1074 aaKnown RBP9.6□□□□□ -0.87
LINC00560-201ENST00000564593 GPCPD1Q9NPB8 672 aa9.6□□□□□ -0.87
LINC00560-201ENST00000564593 PXYLP1Q8TE99 480 aa9.59□□□□□ -0.87
LINC00560-201ENST00000564593 WBP1LQ9NX94 342 aa9.59□□□□□ -0.87
LINC00560-201ENST00000564593 ONECUT3O60422 494 aaPredicted RBP9.58□□□□□ -0.88
LINC00560-201ENST00000564593 MS4A1P11836 297 aa9.58□□□□□ -0.88
LINC00560-201ENST00000564593 TMUB1Q9BVT8 246 aa9.58□□□□□ -0.88
LINC00560-201ENST00000564593 KIAA1468Q9P260 1216 aa9.58□□□□□ -0.88
LINC00560-201ENST00000564593 C14orf37Q86TY3 774 aa9.57□□□□□ -0.88
LINC00560-201ENST00000564593 RBM46Q8TBY0 533 aaKnown RBP9.57□□□□□ -0.88
LINC00560-201ENST00000564593 NLRP7Q8WX94 980 aa9.57□□□□□ -0.88
LINC00560-201ENST00000564593 SSTR3P32745 418 aaPredicted RBP9.55□□□□□ -0.88
LINC00560-201ENST00000564593 FAM198AQ9UFP1 575 aa9.55□□□□□ -0.88
LINC00560-201ENST00000564593 TSKSQ9UJT2 592 aa9.54□□□□□ -0.88
LINC00560-201ENST00000564593 LCE2BO14633 110 aa9.53□□□□□ -0.88
LINC00560-201ENST00000564593 FAM217BQ9NTX9 383 aaPredicted RBP9.53□□□□□ -0.88
LINC00560-201ENST00000564593 SEPT9Q9UHD8 586 aaPredicted RBP9.53□□□□□ -0.88
LINC00560-201ENST00000564593 TRIM6-TRIM34B2RNG4 842 aa9.52□□□□□ -0.89
LINC00560-201ENST00000564593 TRAF7Q6Q0C0 670 aa9.52□□□□□ -0.89
LINC00560-201ENST00000564593 TSR3Q9UJK0 312 aaKnown RBP9.52□□□□□ -0.89
LINC00560-201ENST00000564593 FAM98CQ17RN3 349 aaKnown RBP9.51□□□□□ -0.89
LINC00560-201ENST00000564593 NUDT18Q6ZVK8 323 aa9.51□□□□□ -0.89
LINC00560-201ENST00000564593 PACS2Q86VP3 889 aa9.51□□□□□ -0.89
LINC00560-201ENST00000564593 EYA1Q99502 592 aa9.51□□□□□ -0.89
LINC00560-201ENST00000564593 GOPCQ9HD26 462 aa9.51□□□□□ -0.89
LINC00560-201ENST00000564593 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.5□□□□□ -0.89
LINC00560-201ENST00000564593 GFRA3O60609 400 aa9.5□□□□□ -0.89
LINC00560-201ENST00000564593 BEGAINQ9BUH8 593 aa9.5□□□□□ -0.89
LINC00560-201ENST00000564593 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.5□□□□□ -0.89
LINC00560-201ENST00000564593 RCCD1A6NED2 376 aa9.5□□□□□ -0.89
LINC00560-201ENST00000564593 NBPF26B4DH59 902 aa9.5□□□□□ -0.89
LINC00560-201ENST00000564593 TATDN2Q93075 761 aa9.5□□□□□ -0.89
LINC00560-201ENST00000564593 PNMA3Q9UL41 463 aa9.5□□□□□ -0.89
LINC00560-201ENST00000564593 HPS5Q9UPZ3 1129 aa9.5□□□□□ -0.89
LINC00560-201ENST00000564593 LRCH3Q96II8 777 aa9.49□□□□□ -0.89
LINC00560-201ENST00000564593 C3orf80F5H4A9 247 aa9.48□□□□□ -0.89
LINC00560-201ENST00000564593 PCMTD1Q96MG8 357 aaPredicted RBP9.47□□□□□ -0.89
LINC00560-201ENST00000564593 RSPH6AQ9H0K4 717 aa9.47□□□□□ -0.89
LINC00560-201ENST00000564593 DNAJB2P25686 324 aa9.46□□□□□ -0.9
LINC00560-201ENST00000564593 SH3D19Q5HYK7 790 aa9.46□□□□□ -0.9
LINC00560-201ENST00000564593 SMAPO00193 183 aa9.45□□□□□ -0.9
LINC00560-201ENST00000564593 NRG2O14511 850 aaPredicted RBP9.44□□□□□ -0.9
LINC00560-201ENST00000564593 SKIV2LQ15477 1246 aaKnown RBP9.43□□□□□ -0.9
LINC00560-201ENST00000564593 ATP1B4Q9UN42 357 aaPredicted RBP9.43□□□□□ -0.9
LINC00560-201ENST00000564593 SULF1Q8IWU6 871 aa9.42□□□□□ -0.9
LINC00560-201ENST00000564593 PRKD2Q9BZL6 878 aa9.42□□□□□ -0.9
LINC00560-201ENST00000564593 TMEM134Q9H6X4 195 aa9.42□□□□□ -0.9
LINC00560-201ENST00000564593 DDX11L8A8MPP1 907 aa9.41□□□□□ -0.9
LINC00560-201ENST00000564593 TJAP1Q5JTD0 557 aa9.41□□□□□ -0.9
LINC00560-201ENST00000564593 PPP4CP60510 307 aa9.41□□□□□ -0.9
LINC00560-201ENST00000564593 POLR3EQ9NVU0 708 aa9.41□□□□□ -0.9
LINC00560-201ENST00000564593 DIXDC1Q155Q3 683 aa9.4□□□□□ -0.9
LINC00560-201ENST00000564593 MYSM1Q5VVJ2 828 aa9.4□□□□□ -0.9
LINC00560-201ENST00000564593 TBC1D2Q9BYX2 928 aa9.4□□□□□ -0.9
LINC00560-201ENST00000564593 V9GY48 417 aaPredicted RBP9.4□□□□□ -0.9
LINC00560-201ENST00000564593 CD46P15529 392 aa9.39□□□□□ -0.91
LINC00560-201ENST00000564593 PROCA1Q8NCQ7 364 aaPredicted RBP9.38□□□□□ -0.91
LINC00560-201ENST00000564593 NUTM1Q86Y26 1132 aa9.37□□□□□ -0.91
LINC00560-201ENST00000564593 RDH13Q8NBN7 331 aa9.37□□□□□ -0.91
LINC00560-201ENST00000564593 SPIRE2Q8WWL2 714 aa9.37□□□□□ -0.91
LINC00560-201ENST00000564593 PPP1R18Q6NYC8 613 aa9.36□□□□□ -0.91
LINC00560-201ENST00000564593 IL21Q9HBE4 155 aa9.36□□□□□ -0.91
LINC00560-201ENST00000564593 CLK2P49760 499 aaKnown RBP9.35□□□□□ -0.91
LINC00560-201ENST00000564593 HDGFP51858 240 aaKnown RBP9.35□□□□□ -0.91
LINC00560-201ENST00000564593 FLIIQ13045 1269 aa9.35□□□□□ -0.91
LINC00560-201ENST00000564593 RSPH4AQ5TD94 716 aa9.35□□□□□ -0.91
LINC00560-201ENST00000564593 MTRQ99707 1265 aa9.35□□□□□ -0.91
LINC00560-201ENST00000564593 SWT1Q5T5J6 900 aaKnown RBP9.34□□□□□ -0.91
LINC00560-201ENST00000564593 ZNF787Q6DD87 383 aa9.33□□□□□ -0.92
LINC00560-201ENST00000564593 SAMD7Q7Z3H4 446 aa9.33□□□□□ -0.92
LINC00560-201ENST00000564593 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.33□□□□□ -0.92
LINC00560-201ENST00000564593 RIC3Q7Z5B4 369 aa9.33□□□□□ -0.92
LINC00560-201ENST00000564593 ZMYND15Q9H091 742 aa9.33□□□□□ -0.92
LINC00560-201ENST00000564593 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.33□□□□□ -0.92
LINC00560-201ENST00000564593 LIMD1Q9UGP4 676 aa9.32□□□□□ -0.92
LINC00560-201ENST00000564593 SLC4A3P48751 1232 aa9.3□□□□□ -0.92
LINC00560-201ENST00000564593 PDZRN3Q9UPQ7 1066 aa9.3□□□□□ -0.92
LINC00560-201ENST00000564593 MOXD2PA6NHM9 499 aa9.29□□□□□ -0.92
LINC00560-201ENST00000564593 SUPT5HO00267 1087 aaKnown RBP9.29□□□□□ -0.92
LINC00560-201ENST00000564593 KDM4AO75164 1064 aa9.29□□□□□ -0.92
LINC00560-201ENST00000564593 GCGRP47871 477 aa9.29□□□□□ -0.92
LINC00560-201ENST00000564593 SPTLC1O15269 473 aa9.29□□□□□ -0.92
LINC00560-201ENST00000564593 SLC10A3P09131 477 aa9.29□□□□□ -0.92
LINC00560-201ENST00000564593 RSBN1LQ6PCB5 846 aaPredicted RBP9.29□□□□□ -0.92
LINC00560-201ENST00000564593 ZNF516Q92618 1163 aa9.29□□□□□ -0.92
LINC00560-201ENST00000564593 NDUFV2P19404 249 aa9.28□□□□□ -0.92
LINC00560-201ENST00000564593 SLF2Q8IX21 1173 aa9.28□□□□□ -0.92
LINC00560-201ENST00000564593 CSPP1Q1MSJ5 1256 aa9.27□□□□□ -0.93
LINC00560-201ENST00000564593 TUSC1Q2TAM9 212 aa9.27□□□□□ -0.93
LINC00560-201ENST00000564593 GJA5P36382 358 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms