RNA–Protein interactions for RNA: ENST00000563416.3

LINC00254-201, long intergenic non-protein coding RNA 254, humanhuman

TSL 3 BASIC

Gene LINC00254, Length 662 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00254-201ENST00000563416 PLSCR2Q9NRY7 297 aa11.19□□□□□ -0.62
LINC00254-201ENST00000563416 TPRNQ4KMQ1 711 aa11.18□□□□□ -0.62
LINC00254-201ENST00000563416 RNF40O75150 1001 aa11.17□□□□□ -0.62
LINC00254-201ENST00000563416 SLC24A3Q9HC58 644 aa11.17□□□□□ -0.62
LINC00254-201ENST00000563416 BCAMP50895 628 aa11.16□□□□□ -0.62
LINC00254-201ENST00000563416 HCSTQ9UBK5 93 aa11.16□□□□□ -0.62
LINC00254-201ENST00000563416 DAXXQ9UER7 740 aaPredicted RBP11.15□□□□□ -0.62
LINC00254-201ENST00000563416 TSR3Q9UJK0 312 aaKnown RBP11.15□□□□□ -0.62
LINC00254-201ENST00000563416 PTPN5P54829 565 aa11.14□□□□□ -0.63
LINC00254-201ENST00000563416 RSPH4AQ5TD94 716 aa11.14□□□□□ -0.63
LINC00254-201ENST00000563416 PHOX2BQ99453 314 aa11.14□□□□□ -0.63
LINC00254-201ENST00000563416 HPS5Q9UPZ3 1129 aa11.14□□□□□ -0.63
LINC00254-201ENST00000563416 CLCN1P35523 988 aa11.13□□□□□ -0.63
LINC00254-201ENST00000563416 PPP4CP60510 307 aa11.13□□□□□ -0.63
LINC00254-201ENST00000563416 NYAP1Q6ZVC0 841 aa11.12□□□□□ -0.63
LINC00254-201ENST00000563416 SULF1Q8IWU6 871 aa11.12□□□□□ -0.63
LINC00254-201ENST00000563416 TRIM66O15016 1216 aa11.11□□□□□ -0.63
LINC00254-201ENST00000563416 MDM2Q00987 491 aaPredicted RBP11.11□□□□□ -0.63
LINC00254-201ENST00000563416 AMHR2Q16671 573 aa11.11□□□□□ -0.63
LINC00254-201ENST00000563416 NLRP7Q8WX94 980 aa11.11□□□□□ -0.63
LINC00254-201ENST00000563416 GPCPD1Q9NPB8 672 aa11.11□□□□□ -0.63
LINC00254-201ENST00000563416 TTLL12Q14166 644 aaPredicted RBP11.1□□□□□ -0.63
LINC00254-201ENST00000563416 WBP1LQ9NX94 342 aa11.09□□□□□ -0.63
LINC00254-201ENST00000563416 PRR14Q9BWN1 585 aa11.08□□□□□ -0.64
LINC00254-201ENST00000563416 DDX11L8A8MPP1 907 aa11.07□□□□□ -0.64
LINC00254-201ENST00000563416 RDH13Q8NBN7 331 aa11.06□□□□□ -0.64
LINC00254-201ENST00000563416 PDE4DQ08499 809 aa11.05□□□□□ -0.64
LINC00254-201ENST00000563416 KMT5BQ4FZB7 885 aa11.05□□□□□ -0.64
LINC00254-201ENST00000563416 TMUB1Q9BVT8 246 aa11.03□□□□□ -0.64
LINC00254-201ENST00000563416 CFHP08603 1231 aa11.02□□□□□ -0.65
LINC00254-201ENST00000563416 SLC10A3P09131 477 aa11.02□□□□□ -0.65
LINC00254-201ENST00000563416 GIGYF2Q6Y7W6 1299 aaKnown RBP11.01□□□□□ -0.65
LINC00254-201ENST00000563416 PARP9Q8IXQ6 854 aa11.01□□□□□ -0.65
LINC00254-201ENST00000563416 FAM217BQ9NTX9 383 aaPredicted RBP11.01□□□□□ -0.65
LINC00254-201ENST00000563416 CD46P15529 392 aa10.99□□□□□ -0.65
LINC00254-201ENST00000563416 REPIN1Q9BWE0 567 aaKnown RBP10.99□□□□□ -0.65
LINC00254-201ENST00000563416 PRKCSHP14314 528 aaPredicted RBP10.98□□□□□ -0.65
LINC00254-201ENST00000563416 SSTR3P32745 418 aaPredicted RBP10.98□□□□□ -0.65
LINC00254-201ENST00000563416 APLP1P51693 650 aa10.98□□□□□ -0.65
LINC00254-201ENST00000563416 ACTN4O43707 911 aaKnown RBP10.96□□□□□ -0.65
LINC00254-201ENST00000563416 GCGRP47871 477 aa10.96□□□□□ -0.65
LINC00254-201ENST00000563416 PCDHB3Q9Y5E6 796 aa10.95□□□□□ -0.66
LINC00254-201ENST00000563416 GRIPAP1Q4V328 841 aa10.93□□□□□ -0.66
LINC00254-201ENST00000563416 KDM4AO75164 1064 aa10.91□□□□□ -0.66
LINC00254-201ENST00000563416 MS4A1P11836 297 aa10.91□□□□□ -0.66
LINC00254-201ENST00000563416 USP46P62068 366 aa10.91□□□□□ -0.66
LINC00254-201ENST00000563416 NEUROD2Q15784 382 aa10.91□□□□□ -0.66
LINC00254-201ENST00000563416 NUTM1Q86Y26 1132 aa10.91□□□□□ -0.66
LINC00254-201ENST00000563416 BEGAINQ9BUH8 593 aa10.91□□□□□ -0.66
LINC00254-201ENST00000563416 ATP6V1AP38606 617 aa10.9□□□□□ -0.66
LINC00254-201ENST00000563416 FUT2Q10981 343 aa10.9□□□□□ -0.66
LINC00254-201ENST00000563416 DIXDC1Q155Q3 683 aa10.9□□□□□ -0.66
LINC00254-201ENST00000563416 MTRQ99707 1265 aa10.9□□□□□ -0.66
LINC00254-201ENST00000563416 KDM4CQ9H3R0 1056 aa10.9□□□□□ -0.66
LINC00254-201ENST00000563416 IL21Q9HBE4 155 aa10.9□□□□□ -0.66
LINC00254-201ENST00000563416 ITGBL1O95965 494 aaPredicted RBP10.89□□□□□ -0.67
LINC00254-201ENST00000563416 GPBP1L1Q9HC44 474 aaPredicted RBP10.89□□□□□ -0.67
LINC00254-201ENST00000563416 NR1I2O75469 434 aa10.88□□□□□ -0.67
LINC00254-201ENST00000563416 COPS2P61201 443 aa10.88□□□□□ -0.67
LINC00254-201ENST00000563416 KCNC4Q03721 635 aa10.88□□□□□ -0.67
LINC00254-201ENST00000563416 TJAP1Q5JTD0 557 aa10.87□□□□□ -0.67
LINC00254-201ENST00000563416 PLA2G2EQ9NZK7 142 aa10.87□□□□□ -0.67
LINC00254-201ENST00000563416 BLOC1S3Q6QNY0 202 aa10.86□□□□□ -0.67
LINC00254-201ENST00000563416 DDRGK1Q96HY6 314 aa10.86□□□□□ -0.67
LINC00254-201ENST00000563416 PUS10Q3MIT2 529 aaKnown RBP10.85□□□□□ -0.67
LINC00254-201ENST00000563416 BRPF1P55201 1214 aaPredicted RBP10.84□□□□□ -0.67
LINC00254-201ENST00000563416 MORN1Q5T089 497 aa10.84□□□□□ -0.67
LINC00254-201ENST00000563416 HOXA2O43364 376 aa10.83□□□□□ -0.68
LINC00254-201ENST00000563416 ZPR1O75312 459 aa10.83□□□□□ -0.68
LINC00254-201ENST00000563416 IFFO2Q5TF58 517 aa10.83□□□□□ -0.68
LINC00254-201ENST00000563416 SPIRE2Q8WWL2 714 aa10.83□□□□□ -0.68
LINC00254-201ENST00000563416 SCUBE3Q8IX30 993 aa10.81□□□□□ -0.68
LINC00254-201ENST00000563416 TBC1D2Q9BYX2 928 aa10.81□□□□□ -0.68
LINC00254-201ENST00000563416 RSPH6AQ9H0K4 717 aa10.81□□□□□ -0.68
LINC00254-201ENST00000563416 Q3C1V9 767 aa10.8□□□□□ -0.68
LINC00254-201ENST00000563416 ZNF516Q92618 1163 aa10.8□□□□□ -0.68
LINC00254-201ENST00000563416 FAM117AQ9C073 453 aa10.79□□□□□ -0.68
LINC00254-201ENST00000563416 SLC27A5Q9Y2P5 690 aa10.79□□□□□ -0.68
LINC00254-201ENST00000563416 SALL2Q9Y467 1007 aaPredicted RBP10.78□□□□□ -0.68
LINC00254-201ENST00000563416 FMNL1O95466 1100 aaPredicted RBP10.77□□□□□ -0.69
LINC00254-201ENST00000563416 FDX1P10109 184 aa10.77□□□□□ -0.69
LINC00254-201ENST00000563416 GJA5P36382 358 aa10.77□□□□□ -0.69
LINC00254-201ENST00000563416 MOXD2PA6NHM9 499 aa10.76□□□□□ -0.69
LINC00254-201ENST00000563416 ADH1BP00325 375 aa10.75□□□□□ -0.69
LINC00254-201ENST00000563416 HLA-CQ95604 372 aa10.75□□□□□ -0.69
LINC00254-201ENST00000563416 TLL1O43897 1013 aa10.74□□□□□ -0.69
LINC00254-201ENST00000563416 GGCXP38435 758 aa10.74□□□□□ -0.69
LINC00254-201ENST00000563416 GUCA2AQ02747 115 aa10.74□□□□□ -0.69
LINC00254-201ENST00000563416 MYSM1Q5VVJ2 828 aa10.74□□□□□ -0.69
LINC00254-201ENST00000563416 SPSB2Q99619 263 aa10.74□□□□□ -0.69
LINC00254-201ENST00000563416 NDUFV2P19404 249 aa10.73□□□□□ -0.69
LINC00254-201ENST00000563416 RSBN1LQ6PCB5 846 aaPredicted RBP10.73□□□□□ -0.69
LINC00254-201ENST00000563416 RIC3Q7Z5B4 369 aa10.73□□□□□ -0.69
LINC00254-201ENST00000563416 SPTLC1O15269 473 aa10.72□□□□□ -0.69
LINC00254-201ENST00000563416 BRICD5Q6PL45 260 aa10.72□□□□□ -0.69
LINC00254-201ENST00000563416 IL27Q8NEV9 243 aa10.72□□□□□ -0.69
LINC00254-201ENST00000563416 THAP11Q96EK4 314 aa10.72□□□□□ -0.69
LINC00254-201ENST00000563416 PLEKHG3A1L390 1219 aa10.71□□□□□ -0.69
LINC00254-201ENST00000563416 CLK2P49760 499 aaKnown RBP10.71□□□□□ -0.69
LINC00254-201ENST00000563416 SH3D19Q5HYK7 790 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms