RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 SLC52A1Q9NWF4 448 aa27.93■■■□□ 2.06
TSPAN3-208ENST00000560514 CHIC2Q9UKJ5 165 aa27.92■■■□□ 2.06
TSPAN3-208ENST00000560514 SETD1AO15047 1707 aaKnown RBP27.9■■■□□ 2.06
TSPAN3-208ENST00000560514 NOS1P29475 1434 aa27.9■■■□□ 2.06
TSPAN3-208ENST00000560514 PPP1R15AO75807 674 aaPredicted RBP27.89■■■□□ 2.06
TSPAN3-208ENST00000560514 HDGFP51858 240 aaKnown RBP27.89■■■□□ 2.06
TSPAN3-208ENST00000560514 LOC105371045A0A1W2PR82 267 aa27.87■■■□□ 2.05
TSPAN3-208ENST00000560514 MEX3CQ5U5Q3 659 aaKnown RBP27.85■■■□□ 2.05
TSPAN3-208ENST00000560514 C14orf37Q86TY3 774 aa27.85■■■□□ 2.05
TSPAN3-208ENST00000560514 FGD6Q6ZV73 1430 aa27.84■■■□□ 2.05
TSPAN3-208ENST00000560514 CHD2O14647 1828 aaKnown RBP27.83■■■□□ 2.05
TSPAN3-208ENST00000560514 PLEKHG1Q9ULL1 1385 aa27.82■■■□□ 2.04
TSPAN3-208ENST00000560514 SPATA31A6Q5VVP1 1343 aa27.8■■■□□ 2.04
TSPAN3-208ENST00000560514 RPRD2Q5VT52 1461 aaKnown RBP27.8■■■□□ 2.04
TSPAN3-208ENST00000560514 MYO5BQ9ULV0 1848 aa27.79■■■□□ 2.04
TSPAN3-208ENST00000560514 ZNF772Q68DY9 489 aaPredicted RBP27.79■■■□□ 2.04
TSPAN3-208ENST00000560514 COL16A1Q07092 1604 aaPredicted RBP27.78■■■□□ 2.04
TSPAN3-208ENST00000560514 RIMS2Q9UQ26 1411 aa27.78■■■□□ 2.04
TSPAN3-208ENST00000560514 GCC2Q8IWJ2 1684 aa27.77■■■□□ 2.04
TSPAN3-208ENST00000560514 ZFYVE9O95405 1425 aa27.76■■■□□ 2.04
TSPAN3-208ENST00000560514 NCOA3Q9Y6Q9 1424 aa27.76■■■□□ 2.04
TSPAN3-208ENST00000560514 CHGAP10645 457 aaKnown RBP27.75■■■□□ 2.03
TSPAN3-208ENST00000560514 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.75■■■□□ 2.03
TSPAN3-208ENST00000560514 TRIM52Q96A61 297 aa27.75■■■□□ 2.03
TSPAN3-208ENST00000560514 TBX22Q9Y458 520 aa27.75■■■□□ 2.03
TSPAN3-208ENST00000560514 ATF3P18847 181 aa27.74■■■□□ 2.03
TSPAN3-208ENST00000560514 CADPS2Q86UW7 1296 aa27.74■■■□□ 2.03
TSPAN3-208ENST00000560514 TMEM131LA2VDJ0 1609 aa27.7■■■□□ 2.03
TSPAN3-208ENST00000560514 LRP6O75581 1613 aa27.7■■■□□ 2.03
TSPAN3-208ENST00000560514 ADGRL2O95490 1459 aa27.7■■■□□ 2.03
TSPAN3-208ENST00000560514 ANKRD50Q9ULJ7 1429 aa27.7■■■□□ 2.03
TSPAN3-208ENST00000560514 UPF1Q92900 1129 aaKnown RBP eCLIP27.7■■■□□ 2.02
TSPAN3-208ENST00000560514 C19orf44Q9H6X5 657 aa27.7■■■□□ 2.02
TSPAN3-208ENST00000560514 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.68■■■□□ 2.02
TSPAN3-208ENST00000560514 FAM50AQ14320 339 aaKnown RBP27.68■■■□□ 2.02
TSPAN3-208ENST00000560514 SHPRHQ149N8 1683 aa27.68■■■□□ 2.02
TSPAN3-208ENST00000560514 AHDC1Q5TGY3 1603 aaPredicted RBP27.67■■■□□ 2.02
TSPAN3-208ENST00000560514 RXRBP28702 533 aa27.66■■■□□ 2.02
TSPAN3-208ENST00000560514 NUTM2DQ5VT03 806 aaPredicted RBP27.66■■■□□ 2.02
TSPAN3-208ENST00000560514 DIP2AQ14689 1571 aa27.65■■■□□ 2.02
TSPAN3-208ENST00000560514 PIK3R4Q99570 1358 aa27.64■■■□□ 2.02
TSPAN3-208ENST00000560514 NUTM2BA6NNL0 878 aaPredicted RBP27.63■■■□□ 2.01
TSPAN3-208ENST00000560514 NUTM2EB1AL46 878 aaPredicted RBP27.63■■■□□ 2.01
TSPAN3-208ENST00000560514 NUTM2AQ8IVF1 878 aaPredicted RBP27.63■■■□□ 2.01
TSPAN3-208ENST00000560514 ADAMTS13Q76LX8 1427 aa27.61■■■□□ 2.01
TSPAN3-208ENST00000560514 TRPM2O94759 1503 aa27.58■■■□□ 2.01
TSPAN3-208ENST00000560514 AMOTL2Q9Y2J4 779 aa27.58■■■□□ 2.01
TSPAN3-208ENST00000560514 BRINP3Q76B58 766 aa27.57■■■□□ 2
TSPAN3-208ENST00000560514 E9PCH4 1651 aa27.54■■■□□ 2
TSPAN3-208ENST00000560514 UNC13BO14795 1591 aa27.54■■■□□ 2
TSPAN3-208ENST00000560514 CDK12Q9NYV4 1490 aaPredicted RBP27.54■■■□□ 2
TSPAN3-208ENST00000560514 AFF2P51816 1311 aa27.53■■■□□ 2
TSPAN3-208ENST00000560514 DCCP43146 1447 aa27.51■■□□□ 1.99
TSPAN3-208ENST00000560514 ASXL1Q8IXJ9 1541 aa27.49■■□□□ 1.99
TSPAN3-208ENST00000560514 LRRC59Q96AG4 307 aaKnown RBP27.48■■□□□ 1.99
TSPAN3-208ENST00000560514 PTPRUQ92729 1446 aa27.48■■□□□ 1.99
TSPAN3-208ENST00000560514 SETD5Q9C0A6 1442 aa27.47■■□□□ 1.99
TSPAN3-208ENST00000560514 C8orf37Q96NL8 207 aa27.45■■□□□ 1.98
TSPAN3-208ENST00000560514 IQGAP3Q86VI3 1631 aa27.45■■□□□ 1.98
TSPAN3-208ENST00000560514 NHSL1Q5SYE7 1610 aa27.43■■□□□ 1.98
TSPAN3-208ENST00000560514 MST1RQ04912 1400 aa27.42■■□□□ 1.98
TSPAN3-208ENST00000560514 RBM6P78332 1123 aaKnown RBP27.42■■□□□ 1.98
TSPAN3-208ENST00000560514 QTRT2Q9H974 415 aaKnown RBP27.42■■□□□ 1.98
TSPAN3-208ENST00000560514 NUP155O75694 1391 aa27.41■■□□□ 1.98
TSPAN3-208ENST00000560514 ZNF326Q5BKZ1 582 aaKnown RBP27.41■■□□□ 1.98
TSPAN3-208ENST00000560514 XRN1Q8IZH2 1706 aaKnown RBP27.41■■□□□ 1.98
TSPAN3-208ENST00000560514 ROCK1Q13464 1354 aa27.38■■□□□ 1.97
TSPAN3-208ENST00000560514 SETBP1Q9Y6X0 1596 aa27.38■■□□□ 1.97
TSPAN3-208ENST00000560514 RGS12O14924 1447 aa27.37■■□□□ 1.97
TSPAN3-208ENST00000560514 NGLY1Q96IV0 654 aa27.36■■□□□ 1.97
TSPAN3-208ENST00000560514 NRXN3Q9Y4C0 1643 aa27.35■■□□□ 1.97
TSPAN3-208ENST00000560514 PNPLA6Q8IY17 1366 aa27.35■■□□□ 1.97
TSPAN3-208ENST00000560514 DDX17Q92841 729 aaKnown RBP27.34■■□□□ 1.97
TSPAN3-208ENST00000560514 ADGRL3Q9HAR2 1447 aa27.33■■□□□ 1.97
TSPAN3-208ENST00000560514 ADAMTS2O95450 1211 aa27.33■■□□□ 1.97
TSPAN3-208ENST00000560514 METP08581 1390 aa27.32■■□□□ 1.96
TSPAN3-208ENST00000560514 SPHKAPQ2M3C7 1700 aa27.31■■□□□ 1.96
TSPAN3-208ENST00000560514 FOXD1Q16676 465 aa27.3■■□□□ 1.96
TSPAN3-208ENST00000560514 ATAD2Q6PL18 1390 aa27.28■■□□□ 1.96
TSPAN3-208ENST00000560514 ITGAEP38570 1179 aa27.28■■□□□ 1.96
TSPAN3-208ENST00000560514 NALCNQ8IZF0 1738 aa27.27■■□□□ 1.96
TSPAN3-208ENST00000560514 USP21Q9UK80 565 aa27.25■■□□□ 1.95
TSPAN3-208ENST00000560514 TRPC5Q9UL62 973 aaPredicted RBP27.23■■□□□ 1.95
TSPAN3-208ENST00000560514 C1orf167Q5SNV9 1468 aa27.23■■□□□ 1.95
TSPAN3-208ENST00000560514 ZRANB1Q9UGI0 708 aa27.19■■□□□ 1.94
TSPAN3-208ENST00000560514 NEXMIFQ5QGS0 1516 aa27.18■■□□□ 1.94
TSPAN3-208ENST00000560514 SOS2Q07890 1332 aaPredicted RBP27.17■■□□□ 1.94
TSPAN3-208ENST00000560514 PTCH1Q13635 1447 aa27.17■■□□□ 1.94
TSPAN3-208ENST00000560514 KIF1BO60333 1816 aa27.17■■□□□ 1.94
TSPAN3-208ENST00000560514 LAMC1P11047 1609 aa27.16■■□□□ 1.94
TSPAN3-208ENST00000560514 ORAI2Q96SN7 254 aa27.16■■□□□ 1.94
TSPAN3-208ENST00000560514 SRCAPQ6ZRS2 3230 aa27.15■■□□□ 1.94
TSPAN3-208ENST00000560514 CLTCL1P53675 1640 aa27.15■■□□□ 1.94
TSPAN3-208ENST00000560514 VGFO15240 615 aaPredicted RBP27.13■■□□□ 1.93
TSPAN3-208ENST00000560514 FNBP4Q8N3X1 1017 aaPredicted RBP27.13■■□□□ 1.93
TSPAN3-208ENST00000560514 ROBO2Q9HCK4 1378 aa27.09■■□□□ 1.93
TSPAN3-208ENST00000560514 ATRNO75882 1429 aa27.09■■□□□ 1.93
TSPAN3-208ENST00000560514 CCDC125Q86Z20 511 aa27.09■■□□□ 1.93
TSPAN3-208ENST00000560514 COL22A1Q8NFW1 1626 aaPredicted RBP27.07■■□□□ 1.92
TSPAN3-208ENST00000560514 NPHP3Q7Z494 1330 aa27.07■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms