RNA–Protein interactions for RNA: ENST00000557275.5

SYNE3-205, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SYNE3, Length 13,488 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-205ENST00000557275 SAFBQ15424 915 aaKnown RBP eCLIP10.67□□□□□ -0.7
SYNE3-205ENST00000557275 DESP17661 470 aa10.67□□□□□ -0.7
SYNE3-205ENST00000557275 ERCC6Q03468 1493 aa10.67□□□□□ -0.7
SYNE3-205ENST00000557275 LMOD2Q6P5Q4 547 aa10.67□□□□□ -0.7
SYNE3-205ENST00000557275 OLFM4Q6UX06 510 aa10.67□□□□□ -0.7
SYNE3-205ENST00000557275 POLR3GO15318 223 aaPredicted RBP10.67□□□□□ -0.7
SYNE3-205ENST00000557275 CEP164Q9UPV0 1460 aa10.66□□□□□ -0.7
SYNE3-205ENST00000557275 CCDC73Q6ZRK6 1079 aa10.66□□□□□ -0.7
SYNE3-205ENST00000557275 PDCL2Q8N4E4 241 aa10.66□□□□□ -0.7
SYNE3-205ENST00000557275 XBP1P17861 261 aa10.66□□□□□ -0.7
SYNE3-205ENST00000557275 FAM161AQ3B820 660 aa10.66□□□□□ -0.7
SYNE3-205ENST00000557275 PKNOX2Q96KN3 472 aa10.66□□□□□ -0.7
SYNE3-205ENST00000557275 AXDND1Q5T1B0 1012 aaPredicted RBP10.65□□□□□ -0.7
SYNE3-205ENST00000557275 CPLX1O14810 134 aa10.65□□□□□ -0.7
SYNE3-205ENST00000557275 CFDP1Q9UEE9 299 aaPredicted RBP10.65□□□□□ -0.7
SYNE3-205ENST00000557275 STAMBPO95630 424 aa10.65□□□□□ -0.7
SYNE3-205ENST00000557275 HMGB1P09429 215 aaKnown RBP10.65□□□□□ -0.7
SYNE3-205ENST00000557275 TRIM34Q9BYJ4 488 aa10.65□□□□□ -0.7
SYNE3-205ENST00000557275 PLEKHG5O94827 1062 aa10.65□□□□□ -0.7
SYNE3-205ENST00000557275 CTDP1Q9Y5B0 961 aaPredicted RBP10.65□□□□□ -0.7
SYNE3-205ENST00000557275 CCDC112Q8NEF3 446 aa10.65□□□□□ -0.71
SYNE3-205ENST00000557275 TRDNQ13061 729 aa10.64□□□□□ -0.71
SYNE3-205ENST00000557275 ENOX2Q16206 610 aaKnown RBP10.64□□□□□ -0.71
SYNE3-205ENST00000557275 PDIA4P13667 645 aaKnown RBP10.64□□□□□ -0.71
SYNE3-205ENST00000557275 CC2D1BQ5T0F9 858 aaKnown RBP10.64□□□□□ -0.71
SYNE3-205ENST00000557275 CCDC91Q7Z6B0 441 aa10.64□□□□□ -0.71
SYNE3-205ENST00000557275 WWC2Q6AWC2 1192 aa10.64□□□□□ -0.71
SYNE3-205ENST00000557275 GIMAP7Q8NHV1 300 aa10.63□□□□□ -0.71
SYNE3-205ENST00000557275 ERICH2A1L162 156 aa10.63□□□□□ -0.71
SYNE3-205ENST00000557275 FRAT2O75474 233 aaPredicted RBP10.63□□□□□ -0.71
SYNE3-205ENST00000557275 SYCP1Q15431 976 aa10.63□□□□□ -0.71
SYNE3-205ENST00000557275 PDCP20941 246 aa10.63□□□□□ -0.71
SYNE3-205ENST00000557275 MCM3P25205 808 aa10.63□□□□□ -0.71
SYNE3-205ENST00000557275 RGL3Q3MIN7 710 aa10.63□□□□□ -0.71
SYNE3-205ENST00000557275 BICD2Q8TD16 824 aa10.63□□□□□ -0.71
SYNE3-205ENST00000557275 RRP7BPQ9NSQ0 103 aa10.63□□□□□ -0.71
SYNE3-205ENST00000557275 CHMP3Q9Y3E7 222 aa10.63□□□□□ -0.71
SYNE3-205ENST00000557275 MRE11P49959 708 aa10.62□□□□□ -0.71
SYNE3-205ENST00000557275 TRIM21P19474 475 aaKnown RBP10.62□□□□□ -0.71
SYNE3-205ENST00000557275 TOMM22Q9NS69 142 aa10.62□□□□□ -0.71
SYNE3-205ENST00000557275 RRP9O43818 475 aaKnown RBP10.62□□□□□ -0.71
SYNE3-205ENST00000557275 MBD3O95983 291 aa10.62□□□□□ -0.71
SYNE3-205ENST00000557275 DCAF8L1A6NGE4 600 aa10.62□□□□□ -0.71
SYNE3-205ENST00000557275 MCTP1Q6DN14 999 aa10.62□□□□□ -0.71
SYNE3-205ENST00000557275 ZNHIT6Q9NWK9 470 aaKnown RBP10.62□□□□□ -0.71
SYNE3-205ENST00000557275 WASHC2AQ641Q2 1341 aa10.62□□□□□ -0.71
SYNE3-205ENST00000557275 SRPK2P78362 688 aaKnown RBP10.62□□□□□ -0.71
SYNE3-205ENST00000557275 FILIP1LQ4L180 1135 aa10.62□□□□□ -0.71
SYNE3-205ENST00000557275 PLCD4Q9BRC7 762 aa10.62□□□□□ -0.71
SYNE3-205ENST00000557275 HMGB2P26583 209 aaKnown RBP10.61□□□□□ -0.71
SYNE3-205ENST00000557275 TXLNAP40222 546 aa10.61□□□□□ -0.71
SYNE3-205ENST00000557275 TERF2IPQ9NYB0 399 aa10.61□□□□□ -0.71
SYNE3-205ENST00000557275 TRHP20396 242 aaPredicted RBP10.61□□□□□ -0.71
SYNE3-205ENST00000557275 NASPP49321 788 aaPredicted RBP10.6□□□□□ -0.71
SYNE3-205ENST00000557275 LUZP1Q86V48 1076 aa10.6□□□□□ -0.71
SYNE3-205ENST00000557275 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.6□□□□□ -0.71
SYNE3-205ENST00000557275 DNAI2Q9GZS0 605 aa10.6□□□□□ -0.71
SYNE3-205ENST00000557275 KCNH8Q96L42 1107 aa10.6□□□□□ -0.71
SYNE3-205ENST00000557275 KIF2AO00139 706 aaPredicted RBP10.59□□□□□ -0.71
SYNE3-205ENST00000557275 FANCIQ9NVI1 1328 aa10.59□□□□□ -0.71
SYNE3-205ENST00000557275 MAP9Q49MG5 647 aa10.59□□□□□ -0.71
SYNE3-205ENST00000557275 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.59□□□□□ -0.71
SYNE3-205ENST00000557275 ZFYVE27Q5T4F4 411 aa10.59□□□□□ -0.71
SYNE3-205ENST00000557275 PODXL2Q9NZ53 605 aa10.59□□□□□ -0.71
SYNE3-205ENST00000557275 FBXO3Q9UK99 471 aa10.59□□□□□ -0.71
SYNE3-205ENST00000557275 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.59□□□□□ -0.71
SYNE3-205ENST00000557275 V9GYY5 206 aaPredicted RBP10.59□□□□□ -0.71
SYNE3-205ENST00000557275 ANKRD18BA2A2Z9 1011 aa10.58□□□□□ -0.72
SYNE3-205ENST00000557275 MCM2P49736 904 aa10.58□□□□□ -0.72
SYNE3-205ENST00000557275 APBB1O00213 710 aa10.58□□□□□ -0.72
SYNE3-205ENST00000557275 GBP3Q9H0R5 595 aa10.58□□□□□ -0.72
SYNE3-205ENST00000557275 FYB1O15117 783 aa10.58□□□□□ -0.72
SYNE3-205ENST00000557275 MICALCLQ6ZW33 695 aa10.58□□□□□ -0.72
SYNE3-205ENST00000557275 JMYQ8N9B5 988 aa10.58□□□□□ -0.72
SYNE3-205ENST00000557275 MAGEC2Q9UBF1 373 aaPredicted RBP10.58□□□□□ -0.72
SYNE3-205ENST00000557275 KIF27Q86VH2 1401 aa10.57□□□□□ -0.72
SYNE3-205ENST00000557275 DACH1Q9UI36 760 aa10.57□□□□□ -0.72
SYNE3-205ENST00000557275 NINLQ9Y2I6 1382 aa10.57□□□□□ -0.72
SYNE3-205ENST00000557275 DHX16O60231 1041 aaKnown RBP10.57□□□□□ -0.72
SYNE3-205ENST00000557275 NACADO15069 1562 aa10.57□□□□□ -0.72
SYNE3-205ENST00000557275 ARHGAP35Q9NRY4 1499 aa10.57□□□□□ -0.72
SYNE3-205ENST00000557275 LRRCC1Q9C099 1032 aa10.57□□□□□ -0.72
SYNE3-205ENST00000557275 KINO60870 393 aaKnown RBP10.57□□□□□ -0.72
SYNE3-205ENST00000557275 STIM1Q13586 685 aa10.57□□□□□ -0.72
SYNE3-205ENST00000557275 HIRIP3Q9BW71 556 aaPredicted RBP10.57□□□□□ -0.72
SYNE3-205ENST00000557275 CCNB3Q8WWL7 1395 aa10.56□□□□□ -0.72
SYNE3-205ENST00000557275 U2AF1L5P0DN76 240 aaPredicted RBP10.56□□□□□ -0.72
SYNE3-205ENST00000557275 U2AF1Q01081 240 aaKnown RBP eCLIP10.56□□□□□ -0.72
SYNE3-205ENST00000557275 UACAQ9BZF9 1416 aa10.56□□□□□ -0.72
SYNE3-205ENST00000557275 CCDC175P0C221 793 aa10.56□□□□□ -0.72
SYNE3-205ENST00000557275 PSMA5P28066 241 aa10.56□□□□□ -0.72
SYNE3-205ENST00000557275 HSP90AB4PQ58FF6 505 aa10.56□□□□□ -0.72
SYNE3-205ENST00000557275 NLRP13Q86W25 1043 aa10.56□□□□□ -0.72
SYNE3-205ENST00000557275 CCDC146Q8IYE0 955 aa10.56□□□□□ -0.72
SYNE3-205ENST00000557275 SHTN1A0MZ66 631 aa10.56□□□□□ -0.72
SYNE3-205ENST00000557275 PAF1Q8N7H5 531 aa10.55□□□□□ -0.72
SYNE3-205ENST00000557275 ERC2O15083 957 aa10.55□□□□□ -0.72
SYNE3-205ENST00000557275 CEP63Q96MT8 703 aa10.55□□□□□ -0.72
SYNE3-205ENST00000557275 CCAR1Q8IX12 1150 aaKnown RBP10.55□□□□□ -0.72
SYNE3-205ENST00000557275 INTS3Q68E01 1043 aaKnown RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms