RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 PIK3C2GO75747 1445 aa12.54□□□□□ -0.4
TDP1-210ENST00000554976 KDM5AP29375 1690 aaKnown RBP12.54□□□□□ -0.4
TDP1-210ENST00000554976 SETD1AO15047 1707 aaKnown RBP12.54□□□□□ -0.4
TDP1-210ENST00000554976 NBPF1Q3BBV0 1214 aa12.53□□□□□ -0.4
TDP1-210ENST00000554976 KDM2AQ9Y2K7 1162 aa12.53□□□□□ -0.4
TDP1-210ENST00000554976 RGL3Q3MIN7 710 aa12.52□□□□□ -0.41
TDP1-210ENST00000554976 GGT6Q6P531 493 aa12.51□□□□□ -0.41
TDP1-210ENST00000554976 CARD11Q9BXL7 1154 aa12.51□□□□□ -0.41
TDP1-210ENST00000554976 ARHGEF28Q8N1W1 1705 aaKnown RBP12.51□□□□□ -0.41
TDP1-210ENST00000554976 WASHC2CQ9Y4E1 1318 aa12.51□□□□□ -0.41
TDP1-210ENST00000554976 SCAF11Q99590 1463 aaKnown RBP12.5□□□□□ -0.41
TDP1-210ENST00000554976 ZNF326Q5BKZ1 582 aaKnown RBP12.5□□□□□ -0.41
TDP1-210ENST00000554976 PPP6R1Q9UPN7 881 aa12.5□□□□□ -0.41
TDP1-210ENST00000554976 ASXL1Q8IXJ9 1541 aa12.5□□□□□ -0.41
TDP1-210ENST00000554976 ZFYVE9O95405 1425 aa12.49□□□□□ -0.41
TDP1-210ENST00000554976 TESK2Q96S53 571 aa12.49□□□□□ -0.41
TDP1-210ENST00000554976 QRICH2Q9H0J4 1663 aa12.48□□□□□ -0.41
TDP1-210ENST00000554976 CCER2I3L3R5 266 aa12.48□□□□□ -0.41
TDP1-210ENST00000554976 ST20-MTHFSA0A0A6YYL1 179 aa12.47□□□□□ -0.41
TDP1-210ENST00000554976 ADGRF5Q8IZF2 1346 aa12.47□□□□□ -0.41
TDP1-210ENST00000554976 NRXN3Q9Y4C0 1643 aa12.47□□□□□ -0.41
TDP1-210ENST00000554976 UBR1Q8IWV7 1749 aa12.46□□□□□ -0.41
TDP1-210ENST00000554976 C3P01024 1663 aa12.46□□□□□ -0.41
TDP1-210ENST00000554976 DISP3Q9P2K9 1392 aa12.46□□□□□ -0.41
TDP1-210ENST00000554976 RPGRIP1LQ68CZ1 1315 aa12.46□□□□□ -0.42
TDP1-210ENST00000554976 FER1L4A9Z1Z3 1794 aa12.45□□□□□ -0.42
TDP1-210ENST00000554976 A2ML1A8K2U0 1454 aa12.43□□□□□ -0.42
TDP1-210ENST00000554976 ANP32CO43423 234 aa12.41□□□□□ -0.42
TDP1-210ENST00000554976 IDI1Q13907 227 aa12.41□□□□□ -0.42
TDP1-210ENST00000554976 SLC52A1Q9NWF4 448 aa12.41□□□□□ -0.42
TDP1-210ENST00000554976 SBNO2Q9Y2G9 1366 aa12.41□□□□□ -0.42
TDP1-210ENST00000554976 KNDC1Q76NI1 1749 aa12.4□□□□□ -0.42
TDP1-210ENST00000554976 ALKQ9UM73 1620 aa12.4□□□□□ -0.42
TDP1-210ENST00000554976 C14orf93Q9H972 538 aaKnown RBP12.4□□□□□ -0.43
TDP1-210ENST00000554976 PRKRIP1Q9H875 184 aaPredicted RBP12.39□□□□□ -0.43
TDP1-210ENST00000554976 FBXO31Q5XUX0 539 aaPredicted RBP12.39□□□□□ -0.43
TDP1-210ENST00000554976 PTPRMP28827 1452 aa12.39□□□□□ -0.43
TDP1-210ENST00000554976 CFAP70Q5T0N1 1121 aa12.38□□□□□ -0.43
TDP1-210ENST00000554976 ZMYM3Q14202 1370 aa12.37□□□□□ -0.43
TDP1-210ENST00000554976 EIF3AQ14152 1382 aaKnown RBP12.37□□□□□ -0.43
TDP1-210ENST00000554976 TULP4Q9NRJ4 1543 aa12.36□□□□□ -0.43
TDP1-210ENST00000554976 USP32Q8NFA0 1604 aa12.36□□□□□ -0.43
TDP1-210ENST00000554976 ADAMTSL3P82987 1691 aa12.36□□□□□ -0.43
TDP1-210ENST00000554976 PER1O15534 1290 aaPredicted RBP12.35□□□□□ -0.43
TDP1-210ENST00000554976 YTHDC1Q96MU7 727 aaKnown RBP12.35□□□□□ -0.43
TDP1-210ENST00000554976 DNAJC5Q9H3Z4 198 aa12.35□□□□□ -0.43
TDP1-210ENST00000554976 DLC1Q96QB1 1528 aa12.34□□□□□ -0.43
TDP1-210ENST00000554976 CENPBP07199 599 aaPredicted RBP12.34□□□□□ -0.43
TDP1-210ENST00000554976 KTN1Q86UP2 1357 aaKnown RBP12.33□□□□□ -0.43
TDP1-210ENST00000554976 PARD3Q8TEW0 1356 aa12.33□□□□□ -0.43
TDP1-210ENST00000554976 CCDC184Q52MB2 194 aa12.33□□□□□ -0.44
TDP1-210ENST00000554976 ZNF142P52746 1687 aaPredicted RBP12.33□□□□□ -0.44
TDP1-210ENST00000554976 NLRP1Q9C000 1473 aa12.31□□□□□ -0.44
TDP1-210ENST00000554976 TMF1P82094 1093 aa12.31□□□□□ -0.44
TDP1-210ENST00000554976 RIMS2Q9UQ26 1411 aa12.31□□□□□ -0.44
TDP1-210ENST00000554976 SLIT1O75093 1534 aa12.31□□□□□ -0.44
TDP1-210ENST00000554976 VGFO15240 615 aaPredicted RBP12.31□□□□□ -0.44
TDP1-210ENST00000554976 RIMS1Q86UR5 1692 aaKnown RBP12.3□□□□□ -0.44
TDP1-210ENST00000554976 CPS1P31327 1500 aa12.3□□□□□ -0.44
TDP1-210ENST00000554976 ARHGAP23Q9P227 1491 aa12.3□□□□□ -0.44
TDP1-210ENST00000554976 TNRQ92752 1358 aa12.3□□□□□ -0.44
TDP1-210ENST00000554976 CHGAP10645 457 aaKnown RBP12.29□□□□□ -0.44
TDP1-210ENST00000554976 YTHDC2Q9H6S0 1430 aaKnown RBP12.28□□□□□ -0.44
TDP1-210ENST00000554976 MED14O60244 1454 aa12.27□□□□□ -0.44
TDP1-210ENST00000554976 ANKRD26Q9UPS8 1709 aa12.27□□□□□ -0.44
TDP1-210ENST00000554976 MLECQ14165 292 aa12.27□□□□□ -0.45
TDP1-210ENST00000554976 NPC1L1Q9UHC9 1359 aa12.26□□□□□ -0.45
TDP1-210ENST00000554976 CENPJQ9HC77 1338 aaPredicted RBP12.26□□□□□ -0.45
TDP1-210ENST00000554976 TECPR2O15040 1411 aa12.25□□□□□ -0.45
TDP1-210ENST00000554976 LRPPRCP42704 1394 aaKnown RBP12.25□□□□□ -0.45
TDP1-210ENST00000554976 ADGRB2O60241 1585 aa12.25□□□□□ -0.45
TDP1-210ENST00000554976 TMEM132EQ6IEE7 984 aa12.25□□□□□ -0.45
TDP1-210ENST00000554976 NUTM2DQ5VT03 806 aaPredicted RBP12.24□□□□□ -0.45
TDP1-210ENST00000554976 ADAMTS13Q76LX8 1427 aa12.24□□□□□ -0.45
TDP1-210ENST00000554976 BRD4O60885 1362 aaPredicted RBP12.24□□□□□ -0.45
TDP1-210ENST00000554976 TMEM2Q9UHN6 1383 aa12.24□□□□□ -0.45
TDP1-210ENST00000554976 PANK3Q9H999 370 aa12.24□□□□□ -0.45
TDP1-210ENST00000554976 CEP170BQ9Y4F5 1589 aaPredicted RBP12.24□□□□□ -0.45
TDP1-210ENST00000554976 TOPAZ1Q8N9V7 1692 aa12.23□□□□□ -0.45
TDP1-210ENST00000554976 MYBBP1AQ9BQG0 1328 aaKnown RBP12.23□□□□□ -0.45
TDP1-210ENST00000554976 DIP2AQ14689 1571 aa12.23□□□□□ -0.45
TDP1-210ENST00000554976 SLC24A1O60721 1099 aa12.23□□□□□ -0.45
TDP1-210ENST00000554976 RALBP1Q15311 655 aa12.23□□□□□ -0.45
TDP1-210ENST00000554976 PUS7Q96PZ0 661 aaKnown RBP12.23□□□□□ -0.45
TDP1-210ENST00000554976 XRN1Q8IZH2 1706 aaKnown RBP12.22□□□□□ -0.45
TDP1-210ENST00000554976 CD163L1Q9NR16 1453 aa12.22□□□□□ -0.45
TDP1-210ENST00000554976 CDCA8Q53HL2 280 aa12.22□□□□□ -0.45
TDP1-210ENST00000554976 AMER1Q5JTC6 1135 aaPredicted RBP12.22□□□□□ -0.45
TDP1-210ENST00000554976 SHPRHQ149N8 1683 aa12.22□□□□□ -0.45
TDP1-210ENST00000554976 POLR3GLQ9BT43 218 aa12.21□□□□□ -0.45
TDP1-210ENST00000554976 KIF20BQ96Q89 1820 aa12.21□□□□□ -0.45
TDP1-210ENST00000554976 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.21□□□□□ -0.45
TDP1-210ENST00000554976 TRAK1Q9UPV9 953 aa12.21□□□□□ -0.45
TDP1-210ENST00000554976 AKAP12Q02952 1782 aa12.21□□□□□ -0.46
TDP1-210ENST00000554976 TRHP20396 242 aaPredicted RBP12.21□□□□□ -0.46
TDP1-210ENST00000554976 INSRP06213 1382 aa12.2□□□□□ -0.46
TDP1-210ENST00000554976 PLEKHG1Q9ULL1 1385 aa12.2□□□□□ -0.46
TDP1-210ENST00000554976 ABCC11Q96J66 1382 aa12.2□□□□□ -0.46
TDP1-210ENST00000554976 METP08581 1390 aa12.19□□□□□ -0.46
TDP1-210ENST00000554976 MON2Q7Z3U7 1717 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms