RNA–Protein interactions for RNA: ENST00000554636.1

VTI1B-203, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 3

Gene VTI1B, Length 565 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-203ENST00000554636 PPP4CP60510 307 aa8.12□□□□□ -1.11
VTI1B-203ENST00000554636 TSR3Q9UJK0 312 aaKnown RBP8.12□□□□□ -1.11
VTI1B-203ENST00000554636 SLC24A1O60721 1099 aa8.1□□□□□ -1.11
VTI1B-203ENST00000554636 RCCD1A6NED2 376 aa8.09□□□□□ -1.11
VTI1B-203ENST00000554636 DNAJB2P25686 324 aa8.09□□□□□ -1.11
VTI1B-203ENST00000554636 NLRP7Q8WX94 980 aa8.09□□□□□ -1.11
VTI1B-203ENST00000554636 LMOD2Q6P5Q4 547 aa8.08□□□□□ -1.12
VTI1B-203ENST00000554636 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.07□□□□□ -1.12
VTI1B-203ENST00000554636 METTL3Q86U44 580 aaKnown RBP8.07□□□□□ -1.12
VTI1B-203ENST00000554636 OATP04181 439 aa8.06□□□□□ -1.12
VTI1B-203ENST00000554636 SLC4A3P48751 1232 aa8.06□□□□□ -1.12
VTI1B-203ENST00000554636 SLF2Q8IX21 1173 aa8.06□□□□□ -1.12
VTI1B-203ENST00000554636 PXYLP1Q8TE99 480 aa8.06□□□□□ -1.12
VTI1B-203ENST00000554636 TMEM134Q9H6X4 195 aa8.06□□□□□ -1.12
VTI1B-203ENST00000554636 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.04□□□□□ -1.12
VTI1B-203ENST00000554636 APLP1P51693 650 aa8.04□□□□□ -1.12
VTI1B-203ENST00000554636 NYAP1Q6ZVC0 841 aa8.04□□□□□ -1.12
VTI1B-203ENST00000554636 PHOX2BQ99453 314 aa8.03□□□□□ -1.12
VTI1B-203ENST00000554636 MAP2K5Q13163 448 aa8.01□□□□□ -1.13
VTI1B-203ENST00000554636 SMARCA4P51532 1647 aa8□□□□□ -1.13
VTI1B-203ENST00000554636 CFHP08603 1231 aa8□□□□□ -1.13
VTI1B-203ENST00000554636 COPS2P61201 443 aa8□□□□□ -1.13
VTI1B-203ENST00000554636 MTRQ99707 1265 aa8□□□□□ -1.13
VTI1B-203ENST00000554636 ITGBL1O95965 494 aaPredicted RBP7.99□□□□□ -1.13
VTI1B-203ENST00000554636 KCNC4Q03721 635 aa7.99□□□□□ -1.13
VTI1B-203ENST00000554636 CCDC102AQ96A19 550 aa7.99□□□□□ -1.13
VTI1B-203ENST00000554636 DDX11L8A8MPP1 907 aa7.98□□□□□ -1.13
VTI1B-203ENST00000554636 KRI1Q8N9T8 703 aaKnown RBP7.98□□□□□ -1.13
VTI1B-203ENST00000554636 RDH13Q8NBN7 331 aa7.98□□□□□ -1.13
VTI1B-203ENST00000554636 ZC3H15Q8WU90 426 aaKnown RBP7.98□□□□□ -1.13
VTI1B-203ENST00000554636 NECTIN2Q92692 538 aa7.98□□□□□ -1.13
VTI1B-203ENST00000554636 IRF6O14896 467 aa7.97□□□□□ -1.13
VTI1B-203ENST00000554636 SLC10A3P09131 477 aa7.97□□□□□ -1.13
VTI1B-203ENST00000554636 NCAPD3P42695 1498 aa7.97□□□□□ -1.13
VTI1B-203ENST00000554636 ATAD2BQ9ULI0 1458 aa7.97□□□□□ -1.13
VTI1B-203ENST00000554636 TJAP1Q5JTD0 557 aa7.96□□□□□ -1.14
VTI1B-203ENST00000554636 ZNF516Q92618 1163 aa7.96□□□□□ -1.14
VTI1B-203ENST00000554636 DAXXQ9UER7 740 aaPredicted RBP7.96□□□□□ -1.14
VTI1B-203ENST00000554636 PCDHB3Q9Y5E6 796 aa7.96□□□□□ -1.14
VTI1B-203ENST00000554636 MINK1Q8N4C8 1332 aaPredicted RBP7.96□□□□□ -1.14
VTI1B-203ENST00000554636 BAZ1AQ9NRL2 1556 aaPredicted RBP7.96□□□□□ -1.14
VTI1B-203ENST00000554636 MDM2Q00987 491 aaPredicted RBP7.95□□□□□ -1.14
VTI1B-203ENST00000554636 KMT5BQ4FZB7 885 aa7.95□□□□□ -1.14
VTI1B-203ENST00000554636 IL21Q9HBE4 155 aa7.95□□□□□ -1.14
VTI1B-203ENST00000554636 SMARCA2P51531 1590 aa7.95□□□□□ -1.14
VTI1B-203ENST00000554636 HMGXB3Q12766 1538 aa7.94□□□□□ -1.14
VTI1B-203ENST00000554636 A0A0G2JS52 829 aa7.94□□□□□ -1.14
VTI1B-203ENST00000554636 BLOC1S3Q6QNY0 202 aa7.94□□□□□ -1.14
VTI1B-203ENST00000554636 PRR14Q9BWN1 585 aa7.94□□□□□ -1.14
VTI1B-203ENST00000554636 PEG3Q9GZU2 1588 aa7.93□□□□□ -1.14
VTI1B-203ENST00000554636 RSPH4AQ5TD94 716 aa7.93□□□□□ -1.14
VTI1B-203ENST00000554636 IFFO2Q5TF58 517 aa7.93□□□□□ -1.14
VTI1B-203ENST00000554636 MROH2BQ7Z745 1585 aa7.93□□□□□ -1.14
VTI1B-203ENST00000554636 TLL1O43897 1013 aa7.92□□□□□ -1.14
VTI1B-203ENST00000554636 ZMYND10O75800 440 aa7.92□□□□□ -1.14
VTI1B-203ENST00000554636 PUS10Q3MIT2 529 aaKnown RBP7.92□□□□□ -1.14
VTI1B-203ENST00000554636 NKX2-3Q8TAU0 364 aa7.92□□□□□ -1.14
VTI1B-203ENST00000554636 BCANQ96GW7 911 aa7.92□□□□□ -1.14
VTI1B-203ENST00000554636 ACTN4O43707 911 aaKnown RBP7.91□□□□□ -1.14
VTI1B-203ENST00000554636 BARGINQ6ZT62 677 aa7.91□□□□□ -1.14
VTI1B-203ENST00000554636 SULF1Q8IWU6 871 aa7.91□□□□□ -1.14
VTI1B-203ENST00000554636 ZPR1O75312 459 aa7.89□□□□□ -1.15
VTI1B-203ENST00000554636 BAZ1BQ9UIG0 1483 aaKnown RBP7.88□□□□□ -1.15
VTI1B-203ENST00000554636 FUT2Q10981 343 aa7.88□□□□□ -1.15
VTI1B-203ENST00000554636 TTLL12Q14166 644 aaPredicted RBP7.88□□□□□ -1.15
VTI1B-203ENST00000554636 GPCPD1Q9NPB8 672 aa7.87□□□□□ -1.15
VTI1B-203ENST00000554636 CLCN1P35523 988 aa7.86□□□□□ -1.15
VTI1B-203ENST00000554636 GCGRP47871 477 aa7.86□□□□□ -1.15
VTI1B-203ENST00000554636 PPP1R18Q6NYC8 613 aa7.86□□□□□ -1.15
VTI1B-203ENST00000554636 REPIN1Q9BWE0 567 aaKnown RBP7.86□□□□□ -1.15
VTI1B-203ENST00000554636 NR1I2O75469 434 aa7.85□□□□□ -1.15
VTI1B-203ENST00000554636 CD46P15529 392 aa7.84□□□□□ -1.15
VTI1B-203ENST00000554636 SLC24A3Q9HC58 644 aa7.84□□□□□ -1.15
VTI1B-203ENST00000554636 SCUBE3Q8IX30 993 aa7.83□□□□□ -1.16
VTI1B-203ENST00000554636 FAM217BQ9NTX9 383 aaPredicted RBP7.83□□□□□ -1.16
VTI1B-203ENST00000554636 WIZO95785 1651 aa7.83□□□□□ -1.16
VTI1B-203ENST00000554636 S1PR4O95977 384 aa7.82□□□□□ -1.16
VTI1B-203ENST00000554636 ATP6V1AP38606 617 aa7.82□□□□□ -1.16
VTI1B-203ENST00000554636 MORN1Q5T089 497 aa7.82□□□□□ -1.16
VTI1B-203ENST00000554636 HLA-CQ95604 372 aa7.82□□□□□ -1.16
VTI1B-203ENST00000554636 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.82□□□□□ -1.16
VTI1B-203ENST00000554636 TRIM66O15016 1216 aa7.81□□□□□ -1.16
VTI1B-203ENST00000554636 GIGYF2Q6Y7W6 1299 aaKnown RBP7.81□□□□□ -1.16
VTI1B-203ENST00000554636 AK7Q96M32 723 aa7.81□□□□□ -1.16
VTI1B-203ENST00000554636 TMUB1Q9BVT8 246 aa7.81□□□□□ -1.16
VTI1B-203ENST00000554636 SLC27A5Q9Y2P5 690 aa7.81□□□□□ -1.16
VTI1B-203ENST00000554636 NESP48681 1621 aa7.81□□□□□ -1.16
VTI1B-203ENST00000554636 PPEF1O14829 653 aaPredicted RBP7.8□□□□□ -1.16
VTI1B-203ENST00000554636 KDM4AO75164 1064 aa7.8□□□□□ -1.16
VTI1B-203ENST00000554636 ADH1BP00325 375 aa7.8□□□□□ -1.16
VTI1B-203ENST00000554636 SSTR3P32745 418 aaPredicted RBP7.8□□□□□ -1.16
VTI1B-203ENST00000554636 GGCXP38435 758 aa7.8□□□□□ -1.16
VTI1B-203ENST00000554636 AMHR2Q16671 573 aa7.8□□□□□ -1.16
VTI1B-203ENST00000554636 SPSB2Q99619 263 aa7.8□□□□□ -1.16
VTI1B-203ENST00000554636 GUCA2AQ02747 115 aa7.79□□□□□ -1.16
VTI1B-203ENST00000554636 PARP9Q8IXQ6 854 aa7.79□□□□□ -1.16
VTI1B-203ENST00000554636 RSF1Q96T23 1441 aaPredicted RBP7.78□□□□□ -1.16
VTI1B-203ENST00000554636 RNF223E7ERA6 249 aa7.78□□□□□ -1.16
VTI1B-203ENST00000554636 GRIPAP1Q4V328 841 aa7.78□□□□□ -1.16
VTI1B-203ENST00000554636 RNF19BQ6ZMZ0 732 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms