RNA–Protein interactions for RNA: ENST00000554310.5

SHMT2-211, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 579 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-211ENST00000554310 KIF1BO60333 1816 aa19.55■□□□□ 0.72
SHMT2-211ENST00000554310 ACIN1Q9UKV3 1341 aaKnown RBP19.54■□□□□ 0.72
SHMT2-211ENST00000554310 CHGAP10645 457 aaKnown RBP19.54■□□□□ 0.72
SHMT2-211ENST00000554310 SLC4A1APQ9BWU0 796 aaKnown RBP19.54■□□□□ 0.72
SHMT2-211ENST00000554310 LRRC7Q96NW7 1537 aa19.53■□□□□ 0.72
SHMT2-211ENST00000554310 PPP1R15AO75807 674 aaPredicted RBP19.53■□□□□ 0.72
SHMT2-211ENST00000554310 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.53■□□□□ 0.72
SHMT2-211ENST00000554310 DIP2AQ14689 1571 aa19.53■□□□□ 0.72
SHMT2-211ENST00000554310 NWD1Q149M9 1564 aa19.53■□□□□ 0.72
SHMT2-211ENST00000554310 SETD5Q9C0A6 1442 aa19.52■□□□□ 0.72
SHMT2-211ENST00000554310 NKTRP30414 1462 aaKnown RBP19.49■□□□□ 0.71
SHMT2-211ENST00000554310 NEXMIFQ5QGS0 1516 aa19.47■□□□□ 0.71
SHMT2-211ENST00000554310 XIRP1Q702N8 1843 aaKnown RBP19.47■□□□□ 0.71
SHMT2-211ENST00000554310 UBAP1LF5GYI3 381 aa19.47■□□□□ 0.71
SHMT2-211ENST00000554310 SLC26A8Q96RN1 970 aa19.47■□□□□ 0.71
SHMT2-211ENST00000554310 SETBP1Q9Y6X0 1596 aa19.46■□□□□ 0.71
SHMT2-211ENST00000554310 BCANQ96GW7 911 aa19.46■□□□□ 0.71
SHMT2-211ENST00000554310 CHD2O14647 1828 aaKnown RBP19.46■□□□□ 0.71
SHMT2-211ENST00000554310 RAB3GAP2Q9H2M9 1393 aa19.45■□□□□ 0.7
SHMT2-211ENST00000554310 ADAMTS13Q76LX8 1427 aa19.45■□□□□ 0.7
SHMT2-211ENST00000554310 NRXN3Q9Y4C0 1643 aa19.44■□□□□ 0.7
SHMT2-211ENST00000554310 KCNA6P17658 529 aa19.44■□□□□ 0.7
SHMT2-211ENST00000554310 MPHOSPH9Q99550 1183 aa19.44■□□□□ 0.7
SHMT2-211ENST00000554310 ZNF326Q5BKZ1 582 aaKnown RBP19.43■□□□□ 0.7
SHMT2-211ENST00000554310 ALKQ9UM73 1620 aa19.43■□□□□ 0.7
SHMT2-211ENST00000554310 PIK3R4Q99570 1358 aa19.43■□□□□ 0.7
SHMT2-211ENST00000554310 CCDC144AA2RUR9 1427 aa19.42■□□□□ 0.7
SHMT2-211ENST00000554310 TOM1O60784 492 aa19.42■□□□□ 0.7
SHMT2-211ENST00000554310 NUTM2DQ5VT03 806 aaPredicted RBP19.42■□□□□ 0.7
SHMT2-211ENST00000554310 TBX22Q9Y458 520 aa19.41■□□□□ 0.7
SHMT2-211ENST00000554310 PPLO60437 1756 aa19.4■□□□□ 0.7
SHMT2-211ENST00000554310 TMEM94Q12767 1356 aa19.39■□□□□ 0.69
SHMT2-211ENST00000554310 FOXD1Q16676 465 aa19.38■□□□□ 0.69
SHMT2-211ENST00000554310 SENP3Q9H4L4 574 aaPredicted RBP19.38■□□□□ 0.69
SHMT2-211ENST00000554310 XRN1Q8IZH2 1706 aaKnown RBP19.37■□□□□ 0.69
SHMT2-211ENST00000554310 RPGRIP1LQ68CZ1 1315 aa19.36■□□□□ 0.69
SHMT2-211ENST00000554310 IFT172Q9UG01 1749 aa19.35■□□□□ 0.69
SHMT2-211ENST00000554310 SPATA31E1Q6ZUB1 1445 aa19.34■□□□□ 0.69
SHMT2-211ENST00000554310 PROSER2Q86WR7 435 aaPredicted RBP19.34■□□□□ 0.69
SHMT2-211ENST00000554310 SETD1AO15047 1707 aaKnown RBP19.34■□□□□ 0.69
SHMT2-211ENST00000554310 HRCP23327 699 aa19.33■□□□□ 0.68
SHMT2-211ENST00000554310 NCOA3Q9Y6Q9 1424 aa19.33■□□□□ 0.68
SHMT2-211ENST00000554310 SCAF1Q9H7N4 1312 aaKnown RBP19.32■□□□□ 0.68
SHMT2-211ENST00000554310 PIP4K2BP78356 416 aa19.32■□□□□ 0.68
SHMT2-211ENST00000554310 VGFO15240 615 aaPredicted RBP19.31■□□□□ 0.68
SHMT2-211ENST00000554310 PTPRUQ92729 1446 aa19.31■□□□□ 0.68
SHMT2-211ENST00000554310 MSH6P52701 1360 aa19.31■□□□□ 0.68
SHMT2-211ENST00000554310 METP08581 1390 aa19.28■□□□□ 0.68
SHMT2-211ENST00000554310 ANKRD30BQ9BXX2 1392 aa19.28■□□□□ 0.68
SHMT2-211ENST00000554310 AMOTL2Q9Y2J4 779 aa19.26■□□□□ 0.67
SHMT2-211ENST00000554310 PRAG1Q86YV5 1406 aa19.25■□□□□ 0.67
SHMT2-211ENST00000554310 RBM33Q96EV2 1170 aaKnown RBP19.25■□□□□ 0.67
SHMT2-211ENST00000554310 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.24■□□□□ 0.67
SHMT2-211ENST00000554310 PTCH1Q13635 1447 aa19.24■□□□□ 0.67
SHMT2-211ENST00000554310 FAM135BQ49AJ0 1406 aa19.24■□□□□ 0.67
SHMT2-211ENST00000554310 ROBO1Q9Y6N7 1651 aa19.24■□□□□ 0.67
SHMT2-211ENST00000554310 MYOM2P54296 1465 aa19.23■□□□□ 0.67
SHMT2-211ENST00000554310 HSPA1LP34931 641 aa19.23■□□□□ 0.67
SHMT2-211ENST00000554310 RGL3Q3MIN7 710 aa19.22■□□□□ 0.67
SHMT2-211ENST00000554310 PIK3C2GO75747 1445 aa19.22■□□□□ 0.67
SHMT2-211ENST00000554310 DCCP43146 1447 aa19.22■□□□□ 0.67
SHMT2-211ENST00000554310 C14orf37Q86TY3 774 aa19.21■□□□□ 0.67
SHMT2-211ENST00000554310 LAMC1P11047 1609 aa19.21■□□□□ 0.67
SHMT2-211ENST00000554310 NRXN1Q9ULB1 1477 aa19.2■□□□□ 0.66
SHMT2-211ENST00000554310 ADGRF5Q8IZF2 1346 aa19.2■□□□□ 0.66
SHMT2-211ENST00000554310 NALCNQ8IZF0 1738 aa19.2■□□□□ 0.66
SHMT2-211ENST00000554310 ADGRL3Q9HAR2 1447 aa19.18■□□□□ 0.66
SHMT2-211ENST00000554310 C19orf44Q9H6X5 657 aa19.18■□□□□ 0.66
SHMT2-211ENST00000554310 KNDC1Q76NI1 1749 aa19.17■□□□□ 0.66
SHMT2-211ENST00000554310 ASXL1Q8IXJ9 1541 aa19.17■□□□□ 0.66
SHMT2-211ENST00000554310 CADPS2Q86UW7 1296 aa19.17■□□□□ 0.66
SHMT2-211ENST00000554310 SLAIN2Q9P270 581 aa19.15■□□□□ 0.66
SHMT2-211ENST00000554310 ATF3P18847 181 aa19.14■□□□□ 0.65
SHMT2-211ENST00000554310 ROBO2Q9HCK4 1378 aa19.14■□□□□ 0.65
SHMT2-211ENST00000554310 TECPR2O15040 1411 aa19.14■□□□□ 0.65
SHMT2-211ENST00000554310 DISP3Q9P2K9 1392 aa19.13■□□□□ 0.65
SHMT2-211ENST00000554310 MED1Q15648 1581 aaPredicted RBP19.12■□□□□ 0.65
SHMT2-211ENST00000554310 ILDR2Q71H61 639 aa19.12■□□□□ 0.65
SHMT2-211ENST00000554310 PHLPP1O60346 1717 aa19.11■□□□□ 0.65
SHMT2-211ENST00000554310 LRPPRCP42704 1394 aaKnown RBP19.11■□□□□ 0.65
SHMT2-211ENST00000554310 MST1RQ04912 1400 aa19.1■□□□□ 0.65
SHMT2-211ENST00000554310 AHDC1Q5TGY3 1603 aaPredicted RBP19.1■□□□□ 0.65
SHMT2-211ENST00000554310 CDC42BPGQ6DT37 1551 aa19.09■□□□□ 0.65
SHMT2-211ENST00000554310 COL16A1Q07092 1604 aaPredicted RBP19.08■□□□□ 0.65
SHMT2-211ENST00000554310 YTHDC2Q9H6S0 1430 aaKnown RBP19.08■□□□□ 0.64
SHMT2-211ENST00000554310 ABCC11Q96J66 1382 aa19.07■□□□□ 0.64
SHMT2-211ENST00000554310 STAC3Q96MF2 364 aa19.07■□□□□ 0.64
SHMT2-211ENST00000554310 C14orf93Q9H972 538 aaKnown RBP19.07■□□□□ 0.64
SHMT2-211ENST00000554310 ADGRB1O14514 1584 aa19.05■□□□□ 0.64
SHMT2-211ENST00000554310 NHSL1Q5SYE7 1610 aa19.04■□□□□ 0.64
SHMT2-211ENST00000554310 DHX57Q6P158 1386 aaKnown RBP19.04■□□□□ 0.64
SHMT2-211ENST00000554310 SOCS7O14512 581 aa19.03■□□□□ 0.64
SHMT2-211ENST00000554310 TMEM132EQ6IEE7 984 aa19.03■□□□□ 0.64
SHMT2-211ENST00000554310 DCAF11Q8TEB1 546 aa19.03■□□□□ 0.64
SHMT2-211ENST00000554310 DLC1Q96QB1 1528 aa19.03■□□□□ 0.64
SHMT2-211ENST00000554310 CFAP70Q5T0N1 1121 aa19.02■□□□□ 0.64
SHMT2-211ENST00000554310 BRINP3Q76B58 766 aa19.02■□□□□ 0.64
SHMT2-211ENST00000554310 STK26Q9P289 416 aa19.02■□□□□ 0.64
SHMT2-211ENST00000554310 C1orf167Q5SNV9 1468 aa19.01■□□□□ 0.63
SHMT2-211ENST00000554310 TRIM26Q12899 539 aaPredicted RBP19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms