RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 HDGFP51858 240 aaKnown RBP17.73■□□□□ 0.43
SHMT2-209ENST00000553949 ANKLE2Q86XL3 938 aa17.73■□□□□ 0.43
SHMT2-209ENST00000553949 EID1Q9Y6B2 187 aa17.73■□□□□ 0.43
SHMT2-209ENST00000553949 LTKP29376 864 aa17.72■□□□□ 0.43
SHMT2-209ENST00000553949 NUTM2DQ5VT03 806 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-209ENST00000553949 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.72■□□□□ 0.43
SHMT2-209ENST00000553949 MYO5BQ9ULV0 1848 aa17.72■□□□□ 0.43
SHMT2-209ENST00000553949 NEXMIFQ5QGS0 1516 aa17.71■□□□□ 0.43
SHMT2-209ENST00000553949 NCKAP5LQ9HCH0 1330 aa17.71■□□□□ 0.42
SHMT2-209ENST00000553949 SCAF11Q99590 1463 aaKnown RBP17.7■□□□□ 0.42
SHMT2-209ENST00000553949 PPP1R15AO75807 674 aaPredicted RBP17.7■□□□□ 0.42
SHMT2-209ENST00000553949 VGFO15240 615 aaPredicted RBP17.69■□□□□ 0.42
SHMT2-209ENST00000553949 L3MBTL2Q969R5 705 aa17.69■□□□□ 0.42
SHMT2-209ENST00000553949 TONSLQ96HA7 1378 aa17.68■□□□□ 0.42
SHMT2-209ENST00000553949 DCAF11Q8TEB1 546 aa17.68■□□□□ 0.42
SHMT2-209ENST00000553949 KDM2AQ9Y2K7 1162 aa17.66■□□□□ 0.42
SHMT2-209ENST00000553949 PLEKHG1Q9ULL1 1385 aa17.66■□□□□ 0.42
SHMT2-209ENST00000553949 STAC3Q96MF2 364 aa17.65■□□□□ 0.42
SHMT2-209ENST00000553949 ADGRF5Q8IZF2 1346 aa17.65■□□□□ 0.42
SHMT2-209ENST00000553949 NPHP4O75161 1426 aaPredicted RBP17.64■□□□□ 0.42
SHMT2-209ENST00000553949 MED14O60244 1454 aa17.64■□□□□ 0.41
SHMT2-209ENST00000553949 MYOM2P54296 1465 aa17.64■□□□□ 0.41
SHMT2-209ENST00000553949 PPLO60437 1756 aa17.64■□□□□ 0.41
SHMT2-209ENST00000553949 SENP3Q9H4L4 574 aaPredicted RBP17.64■□□□□ 0.41
SHMT2-209ENST00000553949 TIMELESSQ9UNS1 1208 aa17.64■□□□□ 0.41
SHMT2-209ENST00000553949 BCANQ96GW7 911 aa17.63■□□□□ 0.41
SHMT2-209ENST00000553949 IFT172Q9UG01 1749 aa17.63■□□□□ 0.41
SHMT2-209ENST00000553949 STRCQ7RTU9 1775 aa17.62■□□□□ 0.41
SHMT2-209ENST00000553949 NRXN1Q9ULB1 1477 aa17.62■□□□□ 0.41
SHMT2-209ENST00000553949 POLR1AO95602 1720 aaPredicted RBP17.61■□□□□ 0.41
SHMT2-209ENST00000553949 DMRT2Q9Y5R5 561 aa17.6■□□□□ 0.41
SHMT2-209ENST00000553949 PIK3C2GO75747 1445 aa17.6■□□□□ 0.41
SHMT2-209ENST00000553949 SETBP1Q9Y6X0 1596 aa17.58■□□□□ 0.41
SHMT2-209ENST00000553949 ADAMTS13Q76LX8 1427 aa17.58■□□□□ 0.41
SHMT2-209ENST00000553949 SLC26A8Q96RN1 970 aa17.58■□□□□ 0.4
SHMT2-209ENST00000553949 IQGAP1P46940 1657 aa17.58■□□□□ 0.4
SHMT2-209ENST00000553949 PRAG1Q86YV5 1406 aa17.57■□□□□ 0.4
SHMT2-209ENST00000553949 C14orf93Q9H972 538 aaKnown RBP17.56■□□□□ 0.4
SHMT2-209ENST00000553949 TBX22Q9Y458 520 aa17.56■□□□□ 0.4
SHMT2-209ENST00000553949 NRXN3Q9Y4C0 1643 aa17.55■□□□□ 0.4
SHMT2-209ENST00000553949 NBPF8Q3BBV2 869 aa17.54■□□□□ 0.4
SHMT2-209ENST00000553949 CFAP70Q5T0N1 1121 aa17.54■□□□□ 0.4
SHMT2-209ENST00000553949 ALKQ9UM73 1620 aa17.54■□□□□ 0.4
SHMT2-209ENST00000553949 DIP2AQ14689 1571 aa17.53■□□□□ 0.4
SHMT2-209ENST00000553949 METP08581 1390 aa17.52■□□□□ 0.39
SHMT2-209ENST00000553949 TMEM132EQ6IEE7 984 aa17.49■□□□□ 0.39
SHMT2-209ENST00000553949 PIK3R4Q99570 1358 aa17.49■□□□□ 0.39
SHMT2-209ENST00000553949 NBPF1Q3BBV0 1214 aa17.48■□□□□ 0.39
SHMT2-209ENST00000553949 LAMC1P11047 1609 aa17.47■□□□□ 0.39
SHMT2-209ENST00000553949 SETD1AO15047 1707 aaKnown RBP17.47■□□□□ 0.39
SHMT2-209ENST00000553949 ASXL1Q8IXJ9 1541 aa17.47■□□□□ 0.39
SHMT2-209ENST00000553949 KCNA6P17658 529 aa17.46■□□□□ 0.39
SHMT2-209ENST00000553949 PTPRUQ92729 1446 aa17.46■□□□□ 0.39
SHMT2-209ENST00000553949 ZNF335Q9H4Z2 1342 aaPredicted RBP17.46■□□□□ 0.38
SHMT2-209ENST00000553949 ADGRB1O14514 1584 aa17.45■□□□□ 0.38
SHMT2-209ENST00000553949 KIAA1210Q9ULL0 1709 aa17.45■□□□□ 0.38
SHMT2-209ENST00000553949 AMOTL2Q9Y2J4 779 aa17.45■□□□□ 0.38
SHMT2-209ENST00000553949 RALGAPBQ86X10 1494 aa17.44■□□□□ 0.38
SHMT2-209ENST00000553949 ROCK2O75116 1388 aaKnown RBP17.44■□□□□ 0.38
SHMT2-209ENST00000553949 TRPM1Q7Z4N2 1603 aa17.43■□□□□ 0.38
SHMT2-209ENST00000553949 LRPPRCP42704 1394 aaKnown RBP17.43■□□□□ 0.38
SHMT2-209ENST00000553949 STK26Q9P289 416 aa17.43■□□□□ 0.38
SHMT2-209ENST00000553949 YTHDC2Q9H6S0 1430 aaKnown RBP17.43■□□□□ 0.38
SHMT2-209ENST00000553949 GPRASP1Q5JY77 1395 aa17.41■□□□□ 0.38
SHMT2-209ENST00000553949 ABCC11Q96J66 1382 aa17.41■□□□□ 0.38
SHMT2-209ENST00000553949 NWD1Q149M9 1564 aa17.41■□□□□ 0.38
SHMT2-209ENST00000553949 ZEB1P37275 1124 aaPredicted RBP17.41■□□□□ 0.38
SHMT2-209ENST00000553949 CARD11Q9BXL7 1154 aa17.4■□□□□ 0.38
SHMT2-209ENST00000553949 TECPR2O15040 1411 aa17.39■□□□□ 0.38
SHMT2-209ENST00000553949 TRAK1Q9UPV9 953 aa17.39■□□□□ 0.37
SHMT2-209ENST00000553949 XRN1Q8IZH2 1706 aaKnown RBP17.38■□□□□ 0.37
SHMT2-209ENST00000553949 NKTRP30414 1462 aaKnown RBP17.38■□□□□ 0.37
SHMT2-209ENST00000553949 CHD2O14647 1828 aaKnown RBP17.38■□□□□ 0.37
SHMT2-209ENST00000553949 ROBO2Q9HCK4 1378 aa17.38■□□□□ 0.37
SHMT2-209ENST00000553949 PTCH1Q13635 1447 aa17.38■□□□□ 0.37
SHMT2-209ENST00000553949 SIRT1Q96EB6 747 aa17.37■□□□□ 0.37
SHMT2-209ENST00000553949 CPS1P31327 1500 aa17.37■□□□□ 0.37
SHMT2-209ENST00000553949 LTBP4Q8N2S1 1624 aa17.36■□□□□ 0.37
SHMT2-209ENST00000553949 STRCP1A6NGW2 1772 aa17.36■□□□□ 0.37
SHMT2-209ENST00000553949 PROSER2Q86WR7 435 aaPredicted RBP17.36■□□□□ 0.37
SHMT2-209ENST00000553949 DLC1Q96QB1 1528 aa17.35■□□□□ 0.37
SHMT2-209ENST00000553949 FAM135BQ49AJ0 1406 aa17.34■□□□□ 0.37
SHMT2-209ENST00000553949 RBM33Q96EV2 1170 aaKnown RBP17.34■□□□□ 0.37
SHMT2-209ENST00000553949 PRAM1Q96QH2 718 aa17.34■□□□□ 0.37
SHMT2-209ENST00000553949 KNDC1Q76NI1 1749 aa17.33■□□□□ 0.37
SHMT2-209ENST00000553949 LRRC7Q96NW7 1537 aa17.33■□□□□ 0.37
SHMT2-209ENST00000553949 TMEM94Q12767 1356 aa17.33■□□□□ 0.36
SHMT2-209ENST00000553949 PLEKHH1Q9ULM0 1364 aa17.33■□□□□ 0.36
SHMT2-209ENST00000553949 WAPLQ7Z5K2 1190 aa17.33■□□□□ 0.36
SHMT2-209ENST00000553949 POGKQ9P215 609 aa17.32■□□□□ 0.36
SHMT2-209ENST00000553949 EIF3AQ14152 1382 aaKnown RBP17.31■□□□□ 0.36
SHMT2-209ENST00000553949 USP47Q96K76 1375 aa17.3■□□□□ 0.36
SHMT2-209ENST00000553949 SAFB2Q14151 953 aaKnown RBP eCLIP17.3■□□□□ 0.36
SHMT2-209ENST00000553949 NCOA3Q9Y6Q9 1424 aa17.3■□□□□ 0.36
SHMT2-209ENST00000553949 CENPJQ9HC77 1338 aaPredicted RBP17.29■□□□□ 0.36
SHMT2-209ENST00000553949 C14orf37Q86TY3 774 aa17.28■□□□□ 0.36
SHMT2-209ENST00000553949 ARHGEF28Q8N1W1 1705 aaKnown RBP17.27■□□□□ 0.36
SHMT2-209ENST00000553949 ADGRL3Q9HAR2 1447 aa17.26■□□□□ 0.35
SHMT2-209ENST00000553949 ST20-MTHFSA0A0A6YYL1 179 aa17.25■□□□□ 0.35
SHMT2-209ENST00000553949 EIF4G2P78344 907 aaKnown RBP eCLIP17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms