RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 KIF15Q9NS87 1388 aa23.15■■□□□ 1.3
VPS29-209ENST00000551655 NUTM2BA6NNL0 878 aaPredicted RBP23.14■■□□□ 1.29
VPS29-209ENST00000551655 NUTM2EB1AL46 878 aaPredicted RBP23.14■■□□□ 1.29
VPS29-209ENST00000551655 NUTM2AQ8IVF1 878 aaPredicted RBP23.14■■□□□ 1.29
VPS29-209ENST00000551655 CDK12Q9NYV4 1490 aaPredicted RBP23.13■■□□□ 1.29
VPS29-209ENST00000551655 RRP7BPQ9NSQ0 103 aa23.13■■□□□ 1.29
VPS29-209ENST00000551655 DIP2AQ14689 1571 aa23.12■■□□□ 1.29
VPS29-209ENST00000551655 ERBINQ96RT1 1412 aa23.12■■□□□ 1.29
VPS29-209ENST00000551655 MYO5BQ9ULV0 1848 aa23.12■■□□□ 1.29
VPS29-209ENST00000551655 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.11■■□□□ 1.29
VPS29-209ENST00000551655 AFF2P51816 1311 aa23.1■■□□□ 1.29
VPS29-209ENST00000551655 CROCC2H7BZ55 1655 aa23.1■■□□□ 1.29
VPS29-209ENST00000551655 RGS12O14924 1447 aa23.1■■□□□ 1.29
VPS29-209ENST00000551655 C14orf37Q86TY3 774 aa23.09■■□□□ 1.29
VPS29-209ENST00000551655 NOS1P29475 1434 aa23.08■■□□□ 1.28
VPS29-209ENST00000551655 MYOM3Q5VTT5 1437 aa23.08■■□□□ 1.28
VPS29-209ENST00000551655 LMTK2Q8IWU2 1503 aa23.07■■□□□ 1.28
VPS29-209ENST00000551655 KANK1Q14678 1352 aa23.06■■□□□ 1.28
VPS29-209ENST00000551655 ZFYVE9O95405 1425 aa23.06■■□□□ 1.28
VPS29-209ENST00000551655 PLEKHG1Q9ULL1 1385 aa23.05■■□□□ 1.28
VPS29-209ENST00000551655 ABCC5O15440 1437 aa23.04■■□□□ 1.28
VPS29-209ENST00000551655 GCC2Q8IWJ2 1684 aa23.03■■□□□ 1.28
VPS29-209ENST00000551655 KANK4Q5T7N3 995 aaPredicted RBP23.02■■□□□ 1.28
VPS29-209ENST00000551655 RIMS2Q9UQ26 1411 aa23.01■■□□□ 1.27
VPS29-209ENST00000551655 NUTM2DQ5VT03 806 aaPredicted RBP23.01■■□□□ 1.27
VPS29-209ENST00000551655 BRINP3Q76B58 766 aa23.01■■□□□ 1.27
VPS29-209ENST00000551655 NCOA3Q9Y6Q9 1424 aa23■■□□□ 1.27
VPS29-209ENST00000551655 PPP1R15AO75807 674 aaPredicted RBP23■■□□□ 1.27
VPS29-209ENST00000551655 CADPS2Q86UW7 1296 aa23■■□□□ 1.27
VPS29-209ENST00000551655 ATF3P18847 181 aa22.99■■□□□ 1.27
VPS29-209ENST00000551655 C8orf37Q96NL8 207 aa22.98■■□□□ 1.27
VPS29-209ENST00000551655 SETBP1Q9Y6X0 1596 aa22.97■■□□□ 1.27
VPS29-209ENST00000551655 C19orf44Q9H6X5 657 aa22.97■■□□□ 1.27
VPS29-209ENST00000551655 QTRT2Q9H974 415 aaKnown RBP22.97■■□□□ 1.27
VPS29-209ENST00000551655 TMEM131LA2VDJ0 1609 aa22.97■■□□□ 1.27
VPS29-209ENST00000551655 SLC52A1Q9NWF4 448 aa22.96■■□□□ 1.27
VPS29-209ENST00000551655 ADAMTS13Q76LX8 1427 aa22.96■■□□□ 1.27
VPS29-209ENST00000551655 ASXL1Q8IXJ9 1541 aa22.96■■□□□ 1.27
VPS29-209ENST00000551655 RBM6P78332 1123 aaKnown RBP22.95■■□□□ 1.26
VPS29-209ENST00000551655 TBX22Q9Y458 520 aa22.95■■□□□ 1.26
VPS29-209ENST00000551655 NHSL1Q5SYE7 1610 aa22.94■■□□□ 1.26
VPS29-209ENST00000551655 DAPK1P53355 1430 aa22.94■■□□□ 1.26
VPS29-209ENST00000551655 PTPN23Q9H3S7 1636 aa22.93■■□□□ 1.26
VPS29-209ENST00000551655 CHIC2Q9UKJ5 165 aa22.93■■□□□ 1.26
VPS29-209ENST00000551655 SETD5Q9C0A6 1442 aa22.92■■□□□ 1.26
VPS29-209ENST00000551655 DDX17Q92841 729 aaKnown RBP22.92■■□□□ 1.26
VPS29-209ENST00000551655 PTPRUQ92729 1446 aa22.9■■□□□ 1.26
VPS29-209ENST00000551655 EP400Q96L91 3159 aa22.89■■□□□ 1.25
VPS29-209ENST00000551655 CHGAP10645 457 aaKnown RBP22.88■■□□□ 1.25
VPS29-209ENST00000551655 VPS8Q8N3P4 1428 aa22.88■■□□□ 1.25
VPS29-209ENST00000551655 ATAD2Q6PL18 1390 aa22.88■■□□□ 1.25
VPS29-209ENST00000551655 PNPLA6Q8IY17 1366 aa22.88■■□□□ 1.25
VPS29-209ENST00000551655 ZRANB1Q9UGI0 708 aa22.87■■□□□ 1.25
VPS29-209ENST00000551655 MST1RQ04912 1400 aa22.87■■□□□ 1.25
VPS29-209ENST00000551655 AMOTL2Q9Y2J4 779 aa22.86■■□□□ 1.25
VPS29-209ENST00000551655 ADAMTS2O95450 1211 aa22.85■■□□□ 1.25
VPS29-209ENST00000551655 ANKRD30AQ9BXX3 1397 aa22.85■■□□□ 1.25
VPS29-209ENST00000551655 TRPM2O94759 1503 aa22.84■■□□□ 1.25
VPS29-209ENST00000551655 HDGFP51858 240 aaKnown RBP22.84■■□□□ 1.25
VPS29-209ENST00000551655 RPRD2Q5VT52 1461 aaKnown RBP22.84■■□□□ 1.25
VPS29-209ENST00000551655 LRRC59Q96AG4 307 aaKnown RBP22.83■■□□□ 1.25
VPS29-209ENST00000551655 NGLY1Q96IV0 654 aa22.83■■□□□ 1.25
VPS29-209ENST00000551655 PIK3R4Q99570 1358 aa22.83■■□□□ 1.25
VPS29-209ENST00000551655 DCCP43146 1447 aa22.82■■□□□ 1.24
VPS29-209ENST00000551655 UNC13BO14795 1591 aa22.8■■□□□ 1.24
VPS29-209ENST00000551655 XRN1Q8IZH2 1706 aaKnown RBP22.8■■□□□ 1.24
VPS29-209ENST00000551655 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.8■■□□□ 1.24
VPS29-209ENST00000551655 NRXN3Q9Y4C0 1643 aa22.76■■□□□ 1.23
VPS29-209ENST00000551655 USP21Q9UK80 565 aa22.76■■□□□ 1.23
VPS29-209ENST00000551655 E9PCH4 1651 aa22.74■■□□□ 1.23
VPS29-209ENST00000551655 NALCNQ8IZF0 1738 aa22.74■■□□□ 1.23
VPS29-209ENST00000551655 TRPC5Q9UL62 973 aaPredicted RBP22.72■■□□□ 1.23
VPS29-209ENST00000551655 ATRNO75882 1429 aa22.72■■□□□ 1.23
VPS29-209ENST00000551655 ADGRL2O95490 1459 aa22.72■■□□□ 1.23
VPS29-209ENST00000551655 ANKRD50Q9ULJ7 1429 aa22.71■■□□□ 1.23
VPS29-209ENST00000551655 FOXD1Q16676 465 aa22.7■■□□□ 1.22
VPS29-209ENST00000551655 ADGRL3Q9HAR2 1447 aa22.69■■□□□ 1.22
VPS29-209ENST00000551655 METP08581 1390 aa22.68■■□□□ 1.22
VPS29-209ENST00000551655 FNBP4Q8N3X1 1017 aaPredicted RBP22.66■■□□□ 1.22
VPS29-209ENST00000551655 C1orf167Q5SNV9 1468 aa22.66■■□□□ 1.22
VPS29-209ENST00000551655 LAMC1P11047 1609 aa22.65■■□□□ 1.22
VPS29-209ENST00000551655 ORAI2Q96SN7 254 aa22.63■■□□□ 1.21
VPS29-209ENST00000551655 PTCH1Q13635 1447 aa22.63■■□□□ 1.21
VPS29-209ENST00000551655 CCDC125Q86Z20 511 aa22.62■■□□□ 1.21
VPS29-209ENST00000551655 SOS2Q07890 1332 aaPredicted RBP22.61■■□□□ 1.21
VPS29-209ENST00000551655 BCL9LQ86UU0 1499 aa22.61■■□□□ 1.21
VPS29-209ENST00000551655 COL22A1Q8NFW1 1626 aaPredicted RBP22.61■■□□□ 1.21
VPS29-209ENST00000551655 DEFB132Q7Z7B7 95 aa22.61■■□□□ 1.21
VPS29-209ENST00000551655 LRP5O75197 1615 aa22.6■■□□□ 1.21
VPS29-209ENST00000551655 MARF1Q9Y4F3 1742 aaKnown RBP22.58■■□□□ 1.21
VPS29-209ENST00000551655 LOC105371045A0A1W2PR82 267 aa22.58■■□□□ 1.21
VPS29-209ENST00000551655 IQGAP3Q86VI3 1631 aa22.57■■□□□ 1.2
VPS29-209ENST00000551655 MYOM2P54296 1465 aa22.56■■□□□ 1.2
VPS29-209ENST00000551655 BRWD3Q6RI45 1802 aa22.55■■□□□ 1.2
VPS29-209ENST00000551655 FAM50AQ14320 339 aaKnown RBP22.55■■□□□ 1.2
VPS29-209ENST00000551655 BLMP54132 1417 aaPredicted RBP22.55■■□□□ 1.2
VPS29-209ENST00000551655 GJD4Q96KN9 370 aaPredicted RBP22.54■■□□□ 1.2
VPS29-209ENST00000551655 GLI3P10071 1580 aa22.54■■□□□ 1.2
VPS29-209ENST00000551655 ZNF326Q5BKZ1 582 aaKnown RBP22.52■■□□□ 1.2
VPS29-209ENST00000551655 PSDA5PKW4 1024 aaPredicted RBP22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms