RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 ZNF644Q9H582 1327 aaPredicted RBP15.44■□□□□ 0.06
COL4A6-209ENST00000545689 KIAA1107Q9UPP5 1409 aa15.44■□□□□ 0.06
COL4A6-209ENST00000545689 CHMP3Q9Y3E7 222 aa15.44■□□□□ 0.06
COL4A6-209ENST00000545689 SUPT6HQ7KZ85 1726 aaKnown RBP15.43■□□□□ 0.06
COL4A6-209ENST00000545689 IFT140Q96RY7 1462 aa15.43■□□□□ 0.06
COL4A6-209ENST00000545689 RUFY2Q8WXA3 655 aa15.43■□□□□ 0.06
COL4A6-209ENST00000545689 GNAI1P63096 354 aa15.42■□□□□ 0.06
COL4A6-209ENST00000545689 C1orf141Q5JVX7 400 aa15.42■□□□□ 0.06
COL4A6-209ENST00000545689 MINK1Q8N4C8 1332 aaPredicted RBP15.42■□□□□ 0.06
COL4A6-209ENST00000545689 MRC2Q9UBG0 1479 aa15.42■□□□□ 0.06
COL4A6-209ENST00000545689 RIPK4P57078 832 aa15.42■□□□□ 0.06
COL4A6-209ENST00000545689 BCL2L13Q9BXK5 485 aa15.42■□□□□ 0.06
COL4A6-209ENST00000545689 LRRFIP1Q32MZ4 808 aaKnown RBP15.41■□□□□ 0.06
COL4A6-209ENST00000545689 CHMP5Q9NZZ3 219 aa15.4■□□□□ 0.06
COL4A6-209ENST00000545689 FOXD4L1Q9NU39 408 aa15.4■□□□□ 0.06
COL4A6-209ENST00000545689 ZNF330Q9Y3S2 320 aaPredicted RBP15.4■□□□□ 0.06
COL4A6-209ENST00000545689 DNMBPQ6XZF7 1577 aa15.39■□□□□ 0.05
COL4A6-209ENST00000545689 TULP1O00294 542 aaPredicted RBP15.39■□□□□ 0.05
COL4A6-209ENST00000545689 DDX49Q9Y6V7 483 aaKnown RBP15.39■□□□□ 0.05
COL4A6-209ENST00000545689 TOPBP1Q92547 1522 aa15.39■□□□□ 0.05
COL4A6-209ENST00000545689 RSPH6AQ9H0K4 717 aa15.39■□□□□ 0.05
COL4A6-209ENST00000545689 NINLQ9Y2I6 1382 aa15.39■□□□□ 0.05
COL4A6-209ENST00000545689 TROQ12816 1431 aaPredicted RBP15.38■□□□□ 0.05
COL4A6-209ENST00000545689 C9orf84Q5VXU9 1444 aa15.38■□□□□ 0.05
COL4A6-209ENST00000545689 RILPL2Q969X0 211 aa15.38■□□□□ 0.05
COL4A6-209ENST00000545689 LTV1Q96GA3 475 aaPredicted RBP15.38■□□□□ 0.05
COL4A6-209ENST00000545689 TEFQ10587 303 aa15.37■□□□□ 0.05
COL4A6-209ENST00000545689 DIAPH3Q9NSV4 1193 aa15.37■□□□□ 0.05
COL4A6-209ENST00000545689 OSCARQ8IYS5 282 aa15.37■□□□□ 0.05
COL4A6-209ENST00000545689 NEXNQ0ZGT2 675 aa15.37■□□□□ 0.05
COL4A6-209ENST00000545689 NOL8Q76FK4 1167 aaKnown RBP15.36■□□□□ 0.05
COL4A6-209ENST00000545689 TMX4Q9H1E5 349 aaPredicted RBP15.36■□□□□ 0.05
COL4A6-209ENST00000545689 INTS3Q68E01 1043 aaKnown RBP15.36■□□□□ 0.05
COL4A6-209ENST00000545689 HSP90AB4PQ58FF6 505 aa15.36■□□□□ 0.05
COL4A6-209ENST00000545689 MAP3K1Q13233 1512 aa15.36■□□□□ 0.05
COL4A6-209ENST00000545689 ELL2O00472 640 aaPredicted RBP15.35■□□□□ 0.05
COL4A6-209ENST00000545689 H3BQV1 296 aa15.35■□□□□ 0.05
COL4A6-209ENST00000545689 IFFO2Q5TF58 517 aa15.35■□□□□ 0.05
COL4A6-209ENST00000545689 ISY1Q9ULR0 285 aaKnown RBP15.35■□□□□ 0.05
COL4A6-209ENST00000545689 DAPK1P53355 1430 aa15.35■□□□□ 0.05
COL4A6-209ENST00000545689 DDX58O95786 925 aaKnown RBP15.34■□□□□ 0.05
COL4A6-209ENST00000545689 ZKSCAN1P17029 563 aaPredicted RBP15.34■□□□□ 0.05
COL4A6-209ENST00000545689 SF3A1Q15459 793 aaKnown RBP15.34■□□□□ 0.05
COL4A6-209ENST00000545689 NUCB2P80303 420 aa15.34■□□□□ 0.05
COL4A6-209ENST00000545689 POLA1P09884 1462 aaPredicted RBP15.34■□□□□ 0.05
COL4A6-209ENST00000545689 FAM184AQ8NB25 1140 aa15.34■□□□□ 0.05
COL4A6-209ENST00000545689 PPP2R1AP30153 589 aa15.32■□□□□ 0.04
COL4A6-209ENST00000545689 SMG6Q86US8 1419 aaKnown RBP15.32■□□□□ 0.04
COL4A6-209ENST00000545689 PRG4Q92954 1404 aaPredicted RBP15.32■□□□□ 0.04
COL4A6-209ENST00000545689 CUL7Q14999 1698 aa15.32■□□□□ 0.04
COL4A6-209ENST00000545689 SLC4A3P48751 1232 aa15.31■□□□□ 0.04
COL4A6-209ENST00000545689 RNF20Q5VTR2 975 aa15.31■□□□□ 0.04
COL4A6-209ENST00000545689 TTC5Q8N0Z6 440 aa15.31■□□□□ 0.04
COL4A6-209ENST00000545689 ADAMTS8Q9UP79 889 aa15.31■□□□□ 0.04
COL4A6-209ENST00000545689 C9orf78Q9NZ63 289 aaPredicted RBP15.31■□□□□ 0.04
COL4A6-209ENST00000545689 NUTM2FA1L443 756 aa15.31■□□□□ 0.04
COL4A6-209ENST00000545689 PDE3AQ14432 1141 aa15.31■□□□□ 0.04
COL4A6-209ENST00000545689 CT47B1P0C2W7 299 aaPredicted RBP15.3■□□□□ 0.04
COL4A6-209ENST00000545689 IFIT2P09913 472 aaKnown RBP15.3■□□□□ 0.04
COL4A6-209ENST00000545689 C22orf23Q9BZE7 217 aa15.3■□□□□ 0.04
COL4A6-209ENST00000545689 CDC45O75419 566 aa15.3■□□□□ 0.04
COL4A6-209ENST00000545689 GOLGA6L19H0YKK7 550 aa15.29■□□□□ 0.04
COL4A6-209ENST00000545689 CPLX2Q6PUV4 134 aaKnown RBP15.29■□□□□ 0.04
COL4A6-209ENST00000545689 ERC2O15083 957 aa15.29■□□□□ 0.04
COL4A6-209ENST00000545689 ABCA10Q8WWZ4 1543 aa15.28■□□□□ 0.04
COL4A6-209ENST00000545689 RASSF8Q8NHQ8 419 aa15.28■□□□□ 0.04
COL4A6-209ENST00000545689 ERBINQ96RT1 1412 aa15.28■□□□□ 0.04
COL4A6-209ENST00000545689 GOLGA6L1Q8N7Z2 621 aa15.27■□□□□ 0.04
COL4A6-209ENST00000545689 TPM3P06753 285 aa15.27■□□□□ 0.04
COL4A6-209ENST00000545689 TSPYL4Q9UJ04 414 aa15.27■□□□□ 0.04
COL4A6-209ENST00000545689 FKBP5Q13451 457 aaPredicted RBP15.27■□□□□ 0.04
COL4A6-209ENST00000545689 SYNE3Q6ZMZ3 975 aa15.27■□□□□ 0.04
COL4A6-209ENST00000545689 FOXD4L5Q5VV16 416 aaPredicted RBP15.27■□□□□ 0.03
COL4A6-209ENST00000545689 FOXD4L4Q8WXT5 416 aaPredicted RBP15.27■□□□□ 0.03
COL4A6-209ENST00000545689 ANO2Q9NQ90 1003 aa15.27■□□□□ 0.03
COL4A6-209ENST00000545689 G3BP1Q13283 466 aaKnown RBP eCLIP15.26■□□□□ 0.03
COL4A6-209ENST00000545689 TOMM22Q9NS69 142 aa15.26■□□□□ 0.03
COL4A6-209ENST00000545689 CLSTN1O94985 981 aa15.26■□□□□ 0.03
COL4A6-209ENST00000545689 CC2D2AQ9P2K1 1620 aa15.25■□□□□ 0.03
COL4A6-209ENST00000545689 BECN2A8MW95 431 aa15.25■□□□□ 0.03
COL4A6-209ENST00000545689 EPRSP07814 1512 aaKnown RBP15.25■□□□□ 0.03
COL4A6-209ENST00000545689 TCP11L2Q8N4U5 519 aa15.25■□□□□ 0.03
COL4A6-209ENST00000545689 RPGRIP1LQ68CZ1 1315 aa15.25■□□□□ 0.03
COL4A6-209ENST00000545689 AKAP17AQ02040 695 aaKnown RBP15.25■□□□□ 0.03
COL4A6-209ENST00000545689 PANK1Q8TE04 598 aa15.25■□□□□ 0.03
COL4A6-209ENST00000545689 WDR97A6NE52 1622 aa15.25■□□□□ 0.03
COL4A6-209ENST00000545689 PCF11O94913 1555 aaKnown RBP15.25■□□□□ 0.03
COL4A6-209ENST00000545689 KIAA0586Q9BVV6 1533 aa15.25■□□□□ 0.03
COL4A6-209ENST00000545689 MTHFSP49914 203 aa15.24■□□□□ 0.03
COL4A6-209ENST00000545689 NAIPQ13075 1403 aa15.24■□□□□ 0.03
COL4A6-209ENST00000545689 EIF2S2P20042 333 aaKnown RBP15.24■□□□□ 0.03
COL4A6-209ENST00000545689 GGNBP2Q9H3C7 697 aa15.24■□□□□ 0.03
COL4A6-209ENST00000545689 CABP2Q9NPB3 220 aa15.24■□□□□ 0.03
COL4A6-209ENST00000545689 SNAPC4Q5SXM2 1469 aa15.24■□□□□ 0.03
COL4A6-209ENST00000545689 WDR63Q8IWG1 891 aa15.24■□□□□ 0.03
COL4A6-209ENST00000545689 GCC1Q96CN9 775 aa15.24■□□□□ 0.03
COL4A6-209ENST00000545689 NBPF8Q3BBV2 869 aa15.23■□□□□ 0.03
COL4A6-209ENST00000545689 PNISRQ8TF01 805 aaKnown RBP15.23■□□□□ 0.03
COL4A6-209ENST00000545689 NOC3LQ8WTT2 800 aaKnown RBP15.23■□□□□ 0.03
COL4A6-209ENST00000545689 IQGAP2Q13576 1575 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms