RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, human

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCM2-219	ENST00000544363	DIEXF	Q68CQ4	756 aa	Known RBP	42.9	■■■■■ 4.46
CCM2-219	ENST00000544363	MYO5B	Q9ULV0	1848 aa		42.9	■■■■■ 4.46
CCM2-219	ENST00000544363	USP47	Q96K76	1375 aa		42.9	■■■■■ 4.46
CCM2-219	ENST00000544363	NEXMIF	Q5QGS0	1516 aa		42.89	■■■■■ 4.46
CCM2-219	ENST00000544363	CEBPA	P49715	358 aa	Predicted RBP	42.87	■■■■■ 4.45
CCM2-219	ENST00000544363	LAMC1	P11047	1609 aa		42.87	■■■■■ 4.45
CCM2-219	ENST00000544363	STAG3	Q9UJ98	1225 aa		42.86	■■■■■ 4.45
CCM2-219	ENST00000544363	KIAA1210	Q9ULL0	1709 aa		42.85	■■■■■ 4.45
CCM2-219	ENST00000544363	ADAMTSL3	P82987	1691 aa		42.83	■■■■■ 4.45
CCM2-219	ENST00000544363	A2ML1	A8K2U0	1454 aa		42.82	■■■■■ 4.44
CCM2-219	ENST00000544363	VGF	O15240	615 aa	Predicted RBP	42.82	■■■■■ 4.44
CCM2-219	ENST00000544363	ZFYVE9	O95405	1425 aa		42.79	■■■■■ 4.44
CCM2-219	ENST00000544363	RIMS1	Q86UR5	1692 aa	Known RBP	42.77	■■■■■ 4.44
CCM2-219	ENST00000544363	PIK3C2G	O75747	1445 aa		42.77	■■■■■ 4.44
CCM2-219	ENST00000544363	NLRP1	Q9C000	1473 aa		42.74	■■■■■ 4.43
CCM2-219	ENST00000544363	CFAP70	Q5T0N1	1121 aa		42.73	■■■■■ 4.43
CCM2-219	ENST00000544363	KDM5A	P29375	1690 aa	Known RBP	42.72	■■■■■ 4.43
CCM2-219	ENST00000544363	NUTM2D	Q5VT03	806 aa	Predicted RBP	42.71	■■■■■ 4.43
CCM2-219	ENST00000544363	PLPPR3	Q6T4P5	718 aa		42.69	■■■■■ 4.42
CCM2-219	ENST00000544363	C14orf93	Q9H972	538 aa	Known RBP	42.68	■■■■■ 4.42
CCM2-219	ENST00000544363	ST20-MTHFS	A0A0A6YYL1	179 aa		42.65	■■■■■ 4.42
CCM2-219	ENST00000544363	UBR1	Q8IWV7	1749 aa		42.65	■■■■■ 4.42
CCM2-219	ENST00000544363	RIMS2	Q9UQ26	1411 aa		42.65	■■■■■ 4.42
CCM2-219	ENST00000544363	SETBP1	Q9Y6X0	1596 aa		42.62	■■■■■ 4.41
CCM2-219	ENST00000544363	IQGAP1	P46940	1657 aa		42.61	■■■■■ 4.41
CCM2-219	ENST00000544363	SCAF11	Q99590	1463 aa	Known RBP	42.61	■■■■■ 4.41
CCM2-219	ENST00000544363	WASHC2A	Q641Q2	1341 aa		42.61	■■■■■ 4.41
CCM2-219	ENST00000544363	C11orf95	C9JLR9	678 aa	Predicted RBP	42.59	■■■■■ 4.41
CCM2-219	ENST00000544363	DDX10	Q13206	875 aa	Known RBP	42.57	■■■■■ 4.4
CCM2-219	ENST00000544363	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	42.57	■■■■■ 4.4
CCM2-219	ENST00000544363	CCDC7	Q96M83	1385 aa		42.55	■■■■■ 4.4
CCM2-219	ENST00000544363	POLR1A	O95602	1720 aa	Predicted RBP	42.54	■■■■■ 4.4
CCM2-219	ENST00000544363	HDGF	P51858	240 aa	Known RBP	42.53	■■■■■ 4.4
CCM2-219	ENST00000544363	MYO3A	Q8NEV4	1616 aa		42.53	■■■■■ 4.4
CCM2-219	ENST00000544363	TMEM2	Q9UHN6	1383 aa		42.53	■■■■■ 4.4
CCM2-219	ENST00000544363	ADGRB1	O14514	1584 aa		42.52	■■■■■ 4.4
CCM2-219	ENST00000544363	KIF7	Q2M1P5	1343 aa		42.49	■■■■■ 4.39
CCM2-219	ENST00000544363	EIF3A	Q14152	1382 aa	Known RBP	42.47	■■■■■ 4.39
CCM2-219	ENST00000544363	TMEM132E	Q6IEE7	984 aa		42.44	■■■■■ 4.38
CCM2-219	ENST00000544363	TESK2	Q96S53	571 aa		42.44	■■■■■ 4.38
CCM2-219	ENST00000544363	PTPRM	P28827	1452 aa		42.42	■■■■■ 4.38
CCM2-219	ENST00000544363	ALK	Q9UM73	1620 aa		42.42	■■■■■ 4.38
CCM2-219	ENST00000544363	THEMIS	Q8N1K5	641 aa	Predicted RBP	42.41	■■■■■ 4.38
CCM2-219	ENST00000544363	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	42.4	■■■■■ 4.38
CCM2-219	ENST00000544363	SLIT1	O75093	1534 aa		42.39	■■■■■ 4.38
CCM2-219	ENST00000544363	SETD1B	Q9UPS6	1966 aa	Known RBP	42.39	■■■■■ 4.38
CCM2-219	ENST00000544363	SENP3	Q9H4L4	574 aa	Predicted RBP	42.38	■■■■■ 4.38
CCM2-219	ENST00000544363	ARHGAP23	Q9P227	1491 aa		42.38	■■■■■ 4.37
CCM2-219	ENST00000544363	ASXL1	Q8IXJ9	1541 aa		42.36	■■■■■ 4.37
CCM2-219	ENST00000544363	TRAK1	Q9UPV9	953 aa		42.33	■■■■■ 4.37
CCM2-219	ENST00000544363	NRXN3	Q9Y4C0	1643 aa		42.32	■■■■■ 4.36
CCM2-219	ENST00000544363	ZNF142	P52746	1687 aa	Predicted RBP	42.31	■■■■■ 4.36
CCM2-219	ENST00000544363	LTK	P29376	864 aa		42.31	■■■■■ 4.36
CCM2-219	ENST00000544363	TMF1	P82094	1093 aa		42.31	■■■■■ 4.36
CCM2-219	ENST00000544363	TXNDC2	Q86VQ3	553 aa		42.31	■■■■■ 4.36
CCM2-219	ENST00000544363	EID1	Q9Y6B2	187 aa		42.31	■■■■■ 4.36
CCM2-219	ENST00000544363	SETD1A	O15047	1707 aa	Known RBP	42.28	■■■■■ 4.36
CCM2-219	ENST00000544363	MIER1	Q8N108	512 aa		42.28	■■■■■ 4.36
CCM2-219	ENST00000544363	PLEKHG1	Q9ULL1	1385 aa		42.27	■■■■■ 4.36
CCM2-219	ENST00000544363	POLR3GL	Q9BT43	218 aa		42.27	■■■■■ 4.36
CCM2-219	ENST00000544363	DISP3	Q9P2K9	1392 aa		42.26	■■■■■ 4.36
CCM2-219	ENST00000544363	SLC24A1	O60721	1099 aa		42.25	■■■■■ 4.35
CCM2-219	ENST00000544363	CENPJ	Q9HC77	1338 aa	Predicted RBP	42.24	■■■■■ 4.35
CCM2-219	ENST00000544363	YTHDC2	Q9H6S0	1430 aa	Known RBP	42.24	■■■■■ 4.35
CCM2-219	ENST00000544363	ARHGEF28	Q8N1W1	1705 aa	Known RBP	42.21	■■■■■ 4.35
CCM2-219	ENST00000544363	SBNO2	Q9Y2G9	1366 aa		42.21	■■■■■ 4.35
CCM2-219	ENST00000544363	BCAN	Q96GW7	911 aa		42.2	■■■■■ 4.35
CCM2-219	ENST00000544363	STK26	Q9P289	416 aa		42.19	■■■■■ 4.34
CCM2-219	ENST00000544363	ADAMTS13	Q76LX8	1427 aa		42.16	■■■■■ 4.34
CCM2-219	ENST00000544363	LRPPRC	P42704	1394 aa	Known RBP	42.15	■■■■■ 4.34
CCM2-219	ENST00000544363	CDCA8	Q53HL2	280 aa		42.14	■■■■■ 4.34
CCM2-219	ENST00000544363	QRICH2	Q9H0J4	1663 aa		42.14	■■■■■ 4.34
CCM2-219	ENST00000544363	MET	P08581	1390 aa		42.13	■■■■■ 4.34
CCM2-219	ENST00000544363	MED14	O60244	1454 aa		42.1	■■■■■ 4.33
CCM2-219	ENST00000544363	DLC1	Q96QB1	1528 aa		42.08	■■■■■ 4.33
CCM2-219	ENST00000544363	ABCC11	Q96J66	1382 aa		42.08	■■■■■ 4.33
CCM2-219	ENST00000544363	KDM4F	A0A1W2PPD8	638 aa		42.08	■■■■■ 4.33
CCM2-219	ENST00000544363	ANKLE2	Q86XL3	938 aa		42.06	■■■■■ 4.32
CCM2-219	ENST00000544363	ANP32C	O43423	234 aa		42.03	■■■■■ 4.32
CCM2-219	ENST00000544363	PRAM1	Q96QH2	718 aa		42.02	■■■■■ 4.32
CCM2-219	ENST00000544363	TBX22	Q9Y458	520 aa		42.02	■■■■■ 4.32
CCM2-219	ENST00000544363	DIP2A	Q14689	1571 aa		42	■■■■■ 4.31
CCM2-219	ENST00000544363	SLC26A8	Q96RN1	970 aa		42	■■■■■ 4.31
CCM2-219	ENST00000544363	POGK	Q9P215	609 aa		42	■■■■■ 4.31
CCM2-219	ENST00000544363	KNDC1	Q76NI1	1749 aa		41.98	■■■■■ 4.31
CCM2-219	ENST00000544363	TECPR2	O15040	1411 aa		41.97	■■■■■ 4.31
CCM2-219	ENST00000544363	SAFB2	Q14151	953 aa	Known RBP eCLIP	41.95	■■■■■ 4.31	5e-8	■■■□□ 18
CCM2-219	ENST00000544363	SIRT1	Q96EB6	747 aa		41.95	■■■■■ 4.31
CCM2-219	ENST00000544363	EVC2	Q86UK5	1308 aa		41.92	■■■■■ 4.3
CCM2-219	ENST00000544363	CPS1	P31327	1500 aa		41.91	■■■■■ 4.3
CCM2-219	ENST00000544363	FAM135B	Q49AJ0	1406 aa		41.9	■■■■■ 4.3
CCM2-219	ENST00000544363	TULP4	Q9NRJ4	1543 aa		41.9	■■■■■ 4.3
CCM2-219	ENST00000544363	WAPL	Q7Z5K2	1190 aa		41.88	■■■■■ 4.3
CCM2-219	ENST00000544363	PUS7	Q96PZ0	661 aa	Known RBP	41.88	■■■■■ 4.3
CCM2-219	ENST00000544363	PTPRU	Q92729	1446 aa		41.87	■■■■■ 4.29
CCM2-219	ENST00000544363	PLEKHH1	Q9ULM0	1364 aa		41.86	■■■■■ 4.29
CCM2-219	ENST00000544363	MYOM1	P52179	1685 aa		41.85	■■■■■ 4.29
CCM2-219	ENST00000544363	MINK1	Q8N4C8	1332 aa	Predicted RBP	41.85	■■■■■ 4.29
CCM2-219	ENST00000544363	PANK3	Q9H999	370 aa		41.84	■■■■■ 4.29
CCM2-219	ENST00000544363	PIK3R4	Q99570	1358 aa		41.82	■■■■■ 4.29

Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms